BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0486.0003.p (119 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAA55557.1| 5'-phosphoribosyl-1-glycinamide transformylase T... 165 3e-40 ref|ZP_00125775.1| COG0027: Formate-dependent phosphoribosylglyc... 165 3e-40 ref|NP_388105.1| phosphoribosylglycinamide formyltransferase 2 [... 165 3e-40 ref|ZP_00129213.1| COG0027: Formate-dependent phosphoribosylglyc... 164 4e-40 ref|NP_791294.1| phosphoribosylglycinamide formyltransferase 2 [... 163 1e-39 >emb|CAA55557.1| 5'-phosphoribosyl-1-glycinamide transformylase T [Bacillus subtilis] Length = 384 Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 82/109 (75%), Positives = 93/109 (85%) Query: 1 LGSGELGKEVIIEAQRLGVETVAVDRYEAAPAMGVAHRSHVIDMLDAEALKKLIRAEKPD 60 LGSGELGKEV+IEAQRLGV+TVAVD YE APAM VAH S+V+DMLD E ++ +I E PD Sbjct: 10 LGSGELGKEVVIEAQRLGVQTVAVDSYEHAPAMQVAHNSYVVDMLDPEQIRTIIEKENPD 69 Query: 61 LIVPEIEAIATHALQELEEEGFLVVPTARAARLTMDREGIRRLAAEELG 109 LIVPE+EAIAT L +LEEEGF V+P ARAA+LTMDREGIRRLAAE LG Sbjct: 70 LIVPEVEAIATDELLKLEEEGFHVIPNARAAKLTMDREGIRRLAAETLG 118 >ref|ZP_00125775.1| COG0027: Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Pseudomonas syringae pv. syringae B728a] Length = 393 Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 84/108 (77%), Positives = 92/108 (85%) Query: 1 LGSGELGKEVIIEAQRLGVETVAVDRYEAAPAMGVAHRSHVIDMLDAEALKKLIRAEKPD 60 GSGELGKEV+IE QRLGVE +AVDRYE APAM VAHRSHVI+MLD AL+ +I AEKP Sbjct: 18 CGSGELGKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAALRAVIEAEKPH 77 Query: 61 LIVPEIEAIATHALQELEEEGFLVVPTARAARLTMDREGIRRLAAEEL 108 IVPEIEAIAT L ELE EGF V+PTARAA+LTM+REGIRRLAAEEL Sbjct: 78 FIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEEL 125 >ref|NP_388105.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis] sp|P39771|PURT_BACSU Phosphoribosylglycinamide formyltransferase 2 (GART 2) (GAR transformylase 2) (5'-phosphoribosylglycinamide transformylase 2) (Formate-dependent GAR transformylase) pir||E69685 phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) purT [validated] - Bacillus subtilis emb|CAB12017.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis subsp. subtilis str. 168] dbj|BAA33120.1| PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 2 [Bacillus subtilis] Length = 384 Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 82/109 (75%), Positives = 93/109 (85%) Query: 1 LGSGELGKEVIIEAQRLGVETVAVDRYEAAPAMGVAHRSHVIDMLDAEALKKLIRAEKPD 60 LGSGELGKEV+IEAQRLGV+TVAVD YE APAM VAH S+V+DMLD E ++ +I E PD Sbjct: 10 LGSGELGKEVVIEAQRLGVQTVAVDSYEHAPAMQVAHNSYVVDMLDPEQIRTIIEKENPD 69 Query: 61 LIVPEIEAIATHALQELEEEGFLVVPTARAARLTMDREGIRRLAAEELG 109 LIVPE+EAIAT L +LEEEGF V+P ARAA+LTMDREGIRRLAAE LG Sbjct: 70 LIVPEVEAIATDELLKLEEEGFHVIPNARAAKLTMDREGIRRLAAETLG 118 >ref|ZP_00129213.1| COG0027: Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Desulfovibrio desulfuricans G20] Length = 439 Score = 164 bits (416), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 84/109 (77%), Positives = 92/109 (84%) Query: 1 LGSGELGKEVIIEAQRLGVETVAVDRYEAAPAMGVAHRSHVIDMLDAEALKKLIRAEKPD 60 LGSGELGKEV IEA RLG E VAVDRY APAM VAHRSHVI MLDA+AL++LI E+PD Sbjct: 64 LGSGELGKEVAIEAMRLGAEVVAVDRYAGAPAMQVAHRSHVISMLDADALRRLIAEERPD 123 Query: 61 LIVPEIEAIATHALQELEEEGFLVVPTARAARLTMDREGIRRLAAEELG 109 +VPEIEAIAT L+ELE + VVPTARAARLTM+REGIRRLAAEELG Sbjct: 124 FVVPEIEAIATDVLEELESDSLTVVPTARAARLTMNREGIRRLAAEELG 172 >ref|NP_791294.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO54989.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae pv. tomato str. DC3000] Length = 393 Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 83/108 (76%), Positives = 91/108 (84%) Query: 1 LGSGELGKEVIIEAQRLGVETVAVDRYEAAPAMGVAHRSHVIDMLDAEALKKLIRAEKPD 60 GSGELGKEV+IE QRLGVE +AVDRYE APAM VAHRSHVI+MLD AL+ +I EKP Sbjct: 18 CGSGELGKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAALRAVIELEKPH 77 Query: 61 LIVPEIEAIATHALQELEEEGFLVVPTARAARLTMDREGIRRLAAEEL 108 IVPEIEAIAT L ELE EGF V+PTARAA+LTM+REGIRRLAAEEL Sbjct: 78 FIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEEL 125 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 144,665,685 Number of extensions: 5380074 Number of successful extensions: 20493 Number of sequences better than 1.0e-05: 101 Number of HSP's gapped: 20542 Number of HSP's successfully gapped: 101 Length of query: 119 Length of database: 757,237,578 Length adjustment: 84 Effective length of query: 35 Effective length of database: 529,169,262 Effective search space: 18520924170 Effective search space used: 18520924170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)