BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0486.0001.p
         (76 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_978022.1| conserved hypothetical protein [Bacillus cereus...    62   4e-09
ref|NP_831350.1| putative GTPases (dynamin-related) [Bacillus ce...    62   4e-09
ref|NP_655473.1| MMR_HSR1, GTPase of unknown function [Bacillus ...    62   4e-09
ref|NP_844044.1| conserved hypothetical protein [Bacillus anthra...    62   4e-09
ref|NP_692621.1| hypothetical protein OB1700 [Oceanobacillus ihe...    61   7e-09

>ref|NP_978022.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS40630.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 1219

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/32 (87%), Positives = 32/32 (100%)

Query: 18  RFTLALFGAFSAGKSSFANALLGEEVLPVSPH 49
           +FT+ALFGAFSAGKSSFANALLGE+VLPVSP+
Sbjct: 621 QFTVALFGAFSAGKSSFANALLGEKVLPVSPN 652


>ref|NP_831350.1| putative GTPases (dynamin-related) [Bacillus cereus ATCC 14579]
 gb|AAP08551.1| putative GTPases (dynamin-related) [Bacillus cereus ATCC 14579]
          Length = 1219

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/32 (87%), Positives = 32/32 (100%)

Query: 18  RFTLALFGAFSAGKSSFANALLGEEVLPVSPH 49
           +FT+ALFGAFSAGKSSFANALLGE+VLPVSP+
Sbjct: 621 QFTVALFGAFSAGKSSFANALLGEKVLPVSPN 652


>ref|NP_655473.1| MMR_HSR1, GTPase of unknown function [Bacillus anthracis A2012]
          Length = 1219

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/32 (87%), Positives = 32/32 (100%)

Query: 18  RFTLALFGAFSAGKSSFANALLGEEVLPVSPH 49
           +FT+ALFGAFSAGKSSFANALLGE+VLPVSP+
Sbjct: 621 QFTVALFGAFSAGKSSFANALLGEKVLPVSPN 652


>ref|NP_844044.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP25530.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 1219

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/32 (87%), Positives = 32/32 (100%)

Query: 18  RFTLALFGAFSAGKSSFANALLGEEVLPVSPH 49
           +FT+ALFGAFSAGKSSFANALLGE+VLPVSP+
Sbjct: 621 QFTVALFGAFSAGKSSFANALLGEKVLPVSPN 652


>ref|NP_692621.1| hypothetical protein OB1700 [Oceanobacillus iheyensis HTE831]
 dbj|BAC13656.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 1210

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/31 (87%), Positives = 31/31 (100%)

Query: 19  FTLALFGAFSAGKSSFANALLGEEVLPVSPH 49
           +T+ALFGAFSAGKSSFANAL+GEEVLPVSP+
Sbjct: 624 YTIALFGAFSAGKSSFANALIGEEVLPVSPN 654


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 89,432,290
Number of extensions: 2472748
Number of successful extensions: 9878
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9878
Number of HSP's successfully gapped: 8
Length of query: 76
Length of database: 757,237,578
Length adjustment: 46
Effective length of query: 30
Effective length of database: 632,343,024
Effective search space: 18970290720
Effective search space used: 18970290720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)