BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0483.0014.p (193 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_149292.1| Glycogen-binding regulatory subunit of S/T prot... 85 8e-16 ref|NP_984013.1| ADL083Cp [Eremothecium gossypii] >gi|44982551|g... 56 4e-07 ref|NP_500392.1| protein phosphatase 1 (33.3 kD) (4E410) [Caenor... 55 7e-07 ref|NP_500391.1| protein phosphatase 1 (35.6 kD) (4E410) [Caenor... 55 8e-07 ref|NP_005389.1| protein phosphatase 1, regulatory (inhibitor) s... 54 1e-06 >ref|NP_149292.1| Glycogen-binding regulatory subunit of S/T protein phosphatase I [Clostridium acetobutylicum] gb|AAK76874.1| Glycogen-binding regulatory subunit of S/T protein phosphatase I [Clostridium acetobutylicum] Length = 247 Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 67/170 (39%), Positives = 89/170 (52%), Gaps = 19/170 (11%) Query: 25 PTDVNREKWHFGISRTDGSKDHLELKDPKFIKFAIKYEVNNQIYWDNNGGANYYNEVNSS 84 P+D N E W F +T S + I + KYEVN Q YWDNN G NY V+ + Sbjct: 95 PSD-NYEVWKF---KTPSSSESFGPP----ITYCFKYEVNGQTYWDNNNGKNY---VDGA 143 Query: 85 YPLSSVILGAPNVLNDKSTLSNGEFSGYIFVKNLNPTKTVKVVYTTDNWATTHEVFAAYG 144 Y LSSV + + ++ SN F+ + VKN++ + VKV YTTDNW T +V A Sbjct: 144 YGLSSVYVHDVKTYRNINS-SNNYFATNVDVKNIDGDRVVKVRYTTDNWKTYTDVVA--- 199 Query: 145 GSVNNFNSVESWKYSINVP-GATNVKYAISYTTGGQTYWDNNYGHNYEVN 193 N+ N + S VP G V++A+ Y G YWDNN+G NY VN Sbjct: 200 ---NHNNEKTEFGISQPVPQGTKQVQFAVVYEVNGVQYWDNNFGSNYTVN 246 >ref|NP_984013.1| ADL083Cp [Eremothecium gossypii] gb|AAS51837.1| ADL083Cp [Eremothecium gossypii] Length = 354 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 11/106 (10%) Query: 98 LNDKSTLSNGEFSGYIFVKNLNPTKTVKVVYTTDNWATTHE---VFAAYGGSVNNFNSVE 154 L D S S +G + VKN++ K+V V YT DNWA T + V+ + G +V ++ Sbjct: 246 LQDLSLDSMLVMTGRVLVKNIHYDKSVIVRYTWDNWAHTSDTASVWISSGNAVLPGKDMD 305 Query: 155 SWKYSINVP----GATNVKYAISYTTGG----QTYWDNNYGHNYEV 192 ++++I+VP G +++ I Y QT+WDNN+G+NY V Sbjct: 306 LFEFAIDVPAPVSGTPRLEFCIRYQVRDNSDFQTHWDNNHGNNYVV 351 >ref|NP_500392.1| protein phosphatase 1 (33.3 kD) (4E410) [Caenorhabditis elegans] gb|AAF39789.1| Hypothetical protein CC8.2a [Caenorhabditis elegans] Length = 295 Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Query: 105 SNGEFSGYIFVKNLNPTKTVKVVYTTDNWATTHEVFAAYGGSVNNFNSVESWKYSINVP- 163 S G + + N+ K V V YT D WAT E+ A+Y + + ++++ ++I +P Sbjct: 143 SGSSIVGQVNLLNVAFDKVVVVRYTIDGWATQDEIVASYSHRLFDTEDIDAFNFTIAIPV 202 Query: 164 --GATNVKYAISYTTGGQTYWDNNYGHNYEVN 193 ++ + Y G +WDNN G NY VN Sbjct: 203 KLSEGKCEFCVQYQVAGAEFWDNNGGDNYIVN 234 >ref|NP_500391.1| protein phosphatase 1 (35.6 kD) (4E410) [Caenorhabditis elegans] gb|AAK68157.1| Hypothetical protein CC8.2b [Caenorhabditis elegans] Length = 318 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Query: 111 GYIFVKNLNPTKTVKVVYTTDNWATTHEVFAAYGGSVNNFNSVESWKYSINVP---GATN 167 G + + N+ K V V YT D WAT E+ A+Y + + ++++ ++I +P Sbjct: 172 GQVNLLNVAFDKVVVVRYTIDGWATQDEIVASYSHRLFDTEDIDAFNFTIAIPVKLSEGK 231 Query: 168 VKYAISYTTGGQTYWDNNYGHNYEVN 193 ++ + Y G +WDNN G NY VN Sbjct: 232 CEFCVQYQVAGAEFWDNNGGDNYIVN 257 >ref|NP_005389.1| protein phosphatase 1, regulatory (inhibitor) subunit 5; Phosphatase 1, regulatory inhibitor subunit 5 [Homo sapiens] emb|CAA77082.1| serine-threonine specific protein phosphatase [Homo sapiens] gb|AAH12625.1| Protein phosphatase 1, regulatory (inhibitor) subunit 5 [Homo sapiens] emb|CAD97641.1| hypothetical protein [Homo sapiens] Length = 317 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 14/156 (8%) Query: 41 DGSKDHLELKDPKFIKFAIKYEVNNQIYWDNNGGANYYNEVNSSYPLSSVILGAPNVLND 100 D D L+L D I A+K+ + D + Y S + + V L + Sbjct: 111 DLQFDLLDLND---ISSALKHHEEKNLILDFPQPSTDYLSFRSHFQKNFVCL-------E 160 Query: 101 KSTLSNGEFSGYIFVKNLNPTKTVKVVYTTDNWATTHEVFAAYGGSVNNFNSVESWKYSI 160 +L +G + VKN++ K V++ T D+W +V Y +V +++ ++I Sbjct: 161 NCSLQERTVTGTVKVKNVSFEKKVQIRITFDSWKNYTDVDCVYMKNVYGGTDSDTFSFAI 220 Query: 161 N----VPGATNVKYAISYTTGGQTYWDNNYGHNYEV 192 + +P +++ ISY GQ +WDNN G NY + Sbjct: 221 DLPPVIPTEQKIEFCISYHANGQVFWDNNDGQNYRI 256 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.312 0.131 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 317,542,122 Number of extensions: 13817229 Number of successful extensions: 25267 Number of sequences better than 1.0e-05: 24 Number of HSP's gapped: 25310 Number of HSP's successfully gapped: 25 Length of query: 193 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 74 Effective length of database: 434,140,797 Effective search space: 32126418978 Effective search space used: 32126418978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 122 (51.6 bits)