BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0023.p (601 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00188561.1| hypothetical protein Rxyl038401 [Rubrobacter ... 679 0.0 ref|NP_102016.1| adenine deaminase [Mesorhizobium loti MAFF30309... 484 e-135 ref|NP_436188.1| putative AdeC3 adenine deaminase [Sinorhizobium... 477 e-133 ref|NP_347523.1| Adenine deaminase [Clostridium acetobutylicum] ... 309 2e-82 emb|CAE46371.1| adenine deaminase [uncultured archaeon] 297 7e-79 >ref|ZP_00188561.1| hypothetical protein Rxyl038401 [Rubrobacter xylanophilus DSM 9941] Length = 608 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/597 (61%), Positives = 430/597 (72%), Gaps = 3/597 (0%) Query: 5 RKPLADCVPELVATARGDLPATLVITGGKLVNVCSGEILEGMSVAVQGGRIAYVGKDVSH 64 RKPL + EL ATARGDLPATLVI G LV+V SGE+L GMSVAV+G RIAYVG D H Sbjct: 9 RKPLYEMTRELAATARGDLPATLVIRDGTLVSVTSGEVLPGMSVAVRGPRIAYVGPDAGH 68 Query: 65 MIGEGTRVIEAAGRYIAPGMLDGHCHIESTQLTVTEFARAVLPLGTTGGFFDAHEIANVF 124 +G T VI+AAGRYIAPG LDGHCHIES+Q+TVT+FARAVLPLGTTGGFFDAHEI NV Sbjct: 69 TVGPQTTVIDAAGRYIAPGFLDGHCHIESSQITVTQFARAVLPLGTTGGFFDAHEITNVL 128 Query: 125 GLKGIRLMLEEMRGTPLAAYMQVASCVPSAGPEFETTGASIGPEEVAEAYTWGEDVIALG 184 GL+G+RLML+E R TPLAAY++VASCVPS E ET GA IGPEEVAEA +WGEDVIALG Sbjct: 129 GLRGLRLMLDEARSTPLAAYLEVASCVPSTSTELETPGAVIGPEEVAEALSWGEDVIALG 188 Query: 185 EVMNFPGVVYGDSKMLGEIQATLRAGRVVDGHFTWPADDWRLPVYAAAGVTGDHECVTAE 244 EVMNFPGVV+GD +M EI A LRAG++ DGHF WP DD RL YAA+G++G HE T E Sbjct: 189 EVMNFPGVVFGDERMHAEISAALRAGKIADGHFCWPPDDHRLAAYAASGISGCHEGTTPE 248 Query: 245 DVIERVRLGMYAQMRRGSAWHDVAKTITAHTEHGLDPRRMLLVTDDRSSESLRDEGHMDF 304 D + R+R GMYA++RRGSAWHDVA TI AHTE GLDPRR+LLVTDDRS ESL +EGHMDF Sbjct: 249 DTLWRLRQGMYAKLRRGSAWHDVAATIKAHTERGLDPRRILLVTDDRSPESLLEEGHMDF 308 Query: 305 VVRHAISQGVKPVTAFQMATINTAERFGVARDIGSITPGSCADIILLDGNLADVHVVMTI 364 VVRHAI+QGV PVTAFQMAT+N AERF V+ D+GS+TPG ADI+LL+G+LA+V V +T+ Sbjct: 309 VVRHAIAQGVNPVTAFQMATLNPAERFRVSHDVGSVTPGRYADILLLEGDLAEVRVSLTV 368 Query: 365 AAGVVVAENGIMTASLAPYAYPGEVLASVHLPQLPVAEDFVIRAPIESGSVLTRVIRVIE 424 AAG VVAE G M A L PY YP L +V + EDF I AP R IRV+E Sbjct: 369 AAGEVVAEGGRMVAELEPYDYPAFCLDTVRVAGGLGPEDFDIPAPGGGERARVRAIRVVE 428 Query: 425 NHVETEELILDLPVSEG--RLQVGNGLCKIAVLERHKGTGNKSVGVAAGIGFHEPAAIAM 482 NHVET ++LPV G RL +CK+ V+ERH G + G G+GF PAA+A Sbjct: 429 NHVETRGEWVELPVEGGLVRLDPRKDVCKLFVIERHGRGGGRGAGFVTGLGFERPAALAS 488 Query: 483 TVAHDSHNVLVIGNDDGLMXXXXXXXXXXXXXXXXXXXXXXXLFPLAIAGLMSVEPFEMX 542 TVAHDSHN++V+GN + LM + PL +AGLMS EP+E Sbjct: 489 TVAHDSHNLMVLGNSEELMSRAAREVVAARGGVAVAVGGETAVLPLPVAGLMSPEPYEEV 548 Query: 543 XXXXXXXXXXLYDSGCTLNYAFMTLSLLALAVIPTLRISDKGLVRISPEEGIKLVSL 599 L +GC +NYAFMT+SLLAL V+P L +SD+GLV + EEG +LV L Sbjct: 549 ARLSREIGRALRSAGCRMNYAFMTISLLALVVLPELHLSDRGLVEVG-EEGFRLVGL 604 >ref|NP_102016.1| adenine deaminase [Mesorhizobium loti MAFF303099] dbj|BAB47802.1| adenine deaminase [Mesorhizobium loti] Length = 605 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 280/601 (46%), Positives = 360/601 (59%), Gaps = 13/601 (2%) Query: 6 KPLADCVPELVATARGDLPATLVITGGKLVNVCSGEILEGMSVAVQGGRIAYVGKDVSHM 65 KP + LV A G PA LVI G+ VNV SGEI+ G +A+ GGR AY G + SH Sbjct: 13 KPWTEMATHLVDVAMGRKPADLVIRNGRWVNVHSGEIIAGTDIAIAGGRFAYCGPNASHA 72 Query: 66 IGEGTRVIEAAGRYIAPGMLDGHCHIESTQLTVTEFARAVLPLGTTGGFFDAHEIANVFG 125 IG+GT+V++A GRY+ PG+ D H H+ES +TVTEF RAV+P GTT F D HEIANV G Sbjct: 73 IGQGTKVVDAGGRYLVPGLCDAHMHVESGMVTVTEFCRAVIPHGTTSMFIDPHEIANVLG 132 Query: 126 LKGIRLMLEEMRGTPLAAYMQVASCVPSAGPEFETTGASIGPEEVAEAYTWGEDVIALGE 185 L G+RLM +E P+ ++Q+ SCVPSA P E GA + +VAEA TW E++I LGE Sbjct: 133 LPGVRLMHDEAVAMPINVHVQMPSCVPSA-PGLEHAGAELTVADVAEAMTW-ENIIGLGE 190 Query: 186 VMNFPGVVYGDSKMLGEIQATLRAGRVVDGHFTWPADDWRLPV--YAAAGVTGDHECVTA 243 VMNFPGV D M GEI AT+RAG+ V GH+ + D LP Y A G DHE A Sbjct: 191 VMNFPGVAANDPVMSGEIAATVRAGKTVGGHYA--SRDLGLPFHGYVAGGPEDDHEGTRA 248 Query: 244 EDVIERVRLGMYAQMRRGSAWHDVAKTITAHTEHGLDPRRMLLVTDDRSSESLRDEGHMD 303 ED I RVR GM A +R GSAW+DVA I A TE G+DPR +L TDD S +L EGHMD Sbjct: 249 EDAIARVRQGMKAMLRLGSAWYDVASQIKAVTEGGIDPRNFILCTDDSHSGTLVHEGHMD 308 Query: 304 FVVRHAISQGVKPVTAFQMATINTAERFGVARDIGSITPGSCADIILLDGNLADVHVVMT 363 VVRHAI QG+KPVTA QMATINTA+ F + R+IGSI PG AD++++ +LA + + Sbjct: 309 RVVRHAIQQGLKPVTAIQMATINTAQHFRLEREIGSIAPGRLADLLIVS-DLAAMTIDEV 367 Query: 364 IAAGVVVAENGIMTASLAPYAYPGEVLASVHLPQLPVAEDFVIRAPIESGSVLTRVIRVI 423 A GV +A+ G + + Y YP +V L + A DF I AP + V RVI VI Sbjct: 368 YARGVRLAKGGKLDIDIPAYDYPKTAKNTVKLGKKLRAGDFDITAPKGANEVRVRVIGVI 427 Query: 424 ENHVETEELILDLPVSEGRLQVG--NGLCKIAVLERHKGTGNKSVGVAAGIGFHEPAAIA 481 EN T L DLPV +G + + N +C+IA++ERH+GTG + +G G+ A+A Sbjct: 428 ENQAPTRALEADLPVEDGLVAMDRRNDVCQIALVERHRGTGGVTNAFVSGFGYMGDCAMA 487 Query: 482 MTVAHDSHNVLVIG-NDDGLMXXXXXXXXXXXXXXXXXXXXXXXLFPLAIAGLMSVEPFE 540 +VAHD+H+++ +G N + L + IAGLMS E E Sbjct: 488 SSVAHDAHHIICVGTNKQDMALAVNRLGQVGGGVVLFSKGKELALVEMPIAGLMSDERAE 547 Query: 541 MXXXXXXXXXXXLYDSGCTLNYAFMTLSLLALAVIPTLRISDKGLVRISPEEGIKLVSLF 600 + + GC+LN A+M SLLAL VIP LRISD GL+ ++ + V LF Sbjct: 548 IVAAKAEKLTEAMRKMGCSLNNAYMQHSLLALVVIPELRISDVGLIDVTT---FQKVDLF 604 Query: 601 V 601 V Sbjct: 605 V 605 >ref|NP_436188.1| putative AdeC3 adenine deaminase [Sinorhizobium meliloti 1021] pir||F95379 probable adenine deaminase (EC 3.5.4.2) AdeC3 [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymA gb|AAK65600.1| putative AdeC3 adenine deaminase [Sinorhizobium meliloti] Length = 595 Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust. Identities = 269/595 (45%), Positives = 357/595 (60%), Gaps = 7/595 (1%) Query: 6 KPLADCVPELVATARGDLPATLVITGGKLVNVCSGEILEGMSVAVQGGRIAYVGKDVSHM 65 +P ++ P LV A G PA LV+ G+ VNV SGEI+ G +A+ GGR AYVG D H Sbjct: 3 QPWSEIAPRLVDVAMGRKPADLVVRNGRWVNVYSGEIVPGADIAIVGGRFAYVGPDAGHT 62 Query: 66 IGEGTRVIEAAGRYIAPGMLDGHCHIESTQLTVTEFARAVLPLGTTGGFFDAHEIANVFG 125 IGEGT++++AAGRY+ PG+ DGH H+ES +TVTEFARAV+P GTT F D HEIANV G Sbjct: 63 IGEGTKIVDAAGRYLVPGLCDGHMHVESGLVTVTEFARAVIPHGTTTMFVDPHEIANVLG 122 Query: 126 LKGIRLMLEEMRGTPLAAYMQVASCVPSAGPEFETTGASIGPEEVAEAYTWGEDVIALGE 185 + G++LM +E + P+ ++QV SCVPSA P E GA++ +V EA W ++I LGE Sbjct: 123 IAGVKLMNDEAQTLPVNIFVQVPSCVPSA-PGLENAGATLSAADVREALAW-PNIIGLGE 180 Query: 186 VMNFPGVVYGDSKMLGEIQATLRAGRVVDGHFTWPADDWRLPVYAAAGVTGDHECVTAED 245 +MNFPGV DSKM+ EI AT AG V GH+ P YAA G DHE T ED Sbjct: 181 MMNFPGVAANDSKMVAEIAATRAAGLTVGGHYASPDLGRAFHAYAAGGPADDHEGTTVED 240 Query: 246 VIERVRLGMYAQMRRGSAWHDVAKTITAHTEHGLDPRRMLLVTDDRSSESLRDEGHMDFV 305 I RVR GM + +R GSAW DVA + A TE G+DPR +L TDD S +L +GHM+ V Sbjct: 241 AIARVRQGMRSMLRLGSAWFDVAAQVKAITERGIDPRNFVLCTDDSHSGTLVSDGHMNRV 300 Query: 306 VRHAISQGVKPVTAFQMATINTAERFGVARDIGSITPGSCADIILLDGNLADVHVVMTIA 365 VRHAISQG+KP+TA QMAT+NTA+ FG+ RD+GSI PG AD+I+ +L + + + Sbjct: 301 VRHAISQGLKPITAIQMATLNTAQHFGLERDLGSIAPGRRADLIVTS-DLTALPIEIVFV 359 Query: 366 AGVVVAENGIMTASLAPYAYPGEVLASVHLPQLPVAEDFVIRAPIESGSVLTRVIRVIEN 425 G ++AE G++ A + Y YP +V L + DF I A S V RVI VIEN Sbjct: 360 RGRLLAEKGVLVADIPAYDYPASAKNTVKLGKRLAPTDFDICAA-GSSEVEVRVIGVIEN 418 Query: 426 HVETEELILDLPVSEGRLQV--GNGLCKIAVLERHKGTGNKSVGVAAGIGFHEPAAIAMT 483 T+ L LPV G +Q+ + +C+IA++ERH+ TG +G G+ A+A T Sbjct: 419 QAPTKALQRRLPVECGVVQMDRASDVCQIALVERHRATGGVINAFVSGFGYDTHCAMAST 478 Query: 484 VAHDSHNVLVIGNDDGLMXXXXXXXXXX-XXXXXXXXXXXXXLFPLAIAGLMSVEPFEMX 542 VAHDSH+++V+G + M L L +AGLMS + E+ Sbjct: 479 VAHDSHHMIVVGTNKADMAQAANRLQEVGGGIVLIAGGRELALVELPVAGLMSDQRAEIV 538 Query: 543 XXXXXXXXXXLYDSGCTLNYAFMTLSLLALAVIPTLRISDKGLVRISPEEGIKLV 597 + GC LN A+M SLLAL VIP LRISD GL+ ++ E +++ Sbjct: 539 AEKASRLVEAMRACGCKLNNAYMQHSLLALVVIPELRISDVGLIDVTRFESTEVI 593 >ref|NP_347523.1| Adenine deaminase [Clostridium acetobutylicum] pir||D97009 adenine deaminase [imported] - Clostridium acetobutylicum gb|AAK78863.1| Adenine deaminase [Clostridium acetobutylicum] Length = 570 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 197/583 (33%), Positives = 317/583 (54%), Gaps = 32/583 (5%) Query: 11 CVPELVATARGDLPATLVITGGKLVNVCSGEILEGMSVAVQGGRIAYVGKDVSHMIGEGT 70 C+ E + A G A+LV+ +VNV S EI+ G +A+ G I +GK +G Sbjct: 3 CIEEKIEKALGIKEASLVLKNCNIVNVFSSEIIRG-DLAIDGDTIIGIGK------YKGK 55 Query: 71 RVIEAAGRYIAPGMLDGHCHIESTQLTVTEFARAVLPLGTTGGFFDAHEIANVFGLKGIR 130 I+ + +Y+APG +D H HIES+ ++ EFARAV+ GTT D HEIANV G+ GI+ Sbjct: 56 TEIDLSNKYVAPGFIDSHVHIESSMVSPKEFARAVISRGTTTIIVDPHEIANVCGMDGIK 115 Query: 131 LMLEEMRGTPLAAYMQVASCVPSAGPEFETTGASIGPEEVAEAYTWGEDVIALGEVMNFP 190 M+EE + PL + ++SCVP+ FET+GA + E++ E + V+ LGE+MN+P Sbjct: 116 YMMEETKNMPLDVFFMLSSCVPATS--FETSGAVLKAEDLKELID-SDRVLGLGEMMNYP 172 Query: 191 GVVYGDSKMLGEIQATLRAGRVVDGHFTWPADDWRLPVYAAAGVTGDHECVTAEDVIERV 250 GV+ + ++L +++ ++VDGH L Y AG+ DHEC + E++ E++ Sbjct: 173 GVLSREEEVLNKLKLAGSYNKIVDGH-APSVRGNELNAYNLAGIKTDHECSSIEEMNEKI 231 Query: 251 RLGMYAQMRRGSAWHD---VAKTITAHTEHGLDPRRMLLVTDDRSSESLRDEGHMDFVVR 307 R GMY +R GSA + + K + A E RR++ DDR + + GHMD VR Sbjct: 232 RNGMYIAIREGSAAKNLDILIKGVNAKNE-----RRIMFCADDRHPDDILKSGHMDNCVR 286 Query: 308 HAISQGVKPVTAFQMATINTAERFGVARDIGSITPGSCADIILLDGNLADVHVVMTIAAG 367 AI G++ A +MA+IN AE + + R +G+I P AD+++L+ +L DV V M I +G Sbjct: 287 RAIYNGIENTAAIRMASINAAECYKLER-VGAIAPSYKADLVVLE-DLKDVKVNMVIKSG 344 Query: 368 VVVAENGIMTASLAPYAYPGEVLASVHLPQLPVAEDFVIRAPIESGSVLTRVIRVIENHV 427 VV ++ + + +V +V++ ++ E+ ++ + S+++ V N + Sbjct: 345 EVVFKDNKHLKDMGSKSDITKVSNTVNIKKVS-EENLELKLDTDVCSIIS----VALNSI 399 Query: 428 ETEELILDLPVSEG--RLQVGNGLCKIAVLERHKGTGNKSVGVAAGIGFHEPAAIAMTVA 485 T+ + + +S G + ++ G+ K+AV+ERHK +G+ +G+ G + AIA TVA Sbjct: 400 STKNVKRKVNLSNGIFKCELNYGINKVAVIERHKKSGSIGIGLVENFGL-KRGAIASTVA 458 Query: 486 HDSHNVLVIGNDD-GLMXXXXXXXXXXXXXXXXXXXXXXXLFPLAIAGLMSVEPFEMXXX 544 HDSHN++V+GN+D ++ L IAGLMS + E Sbjct: 459 HDSHNIIVLGNNDEDMVKAVNEIERVGGGITISLDGKIIETLELEIAGLMSNKSMEFVAE 518 Query: 545 XXXXXXXXLYDS-GCTLNYA-FMTLSLLALAVIPTLRISDKGL 585 +++ G + FMTL+ LAL VIP +RI+DKG+ Sbjct: 519 RVSKMINICHNTLGVNKDIQPFMTLAFLALPVIPEIRITDKGV 561 >emb|CAE46371.1| adenine deaminase [uncultured archaeon] Length = 589 Score = 297 bits (760), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 213/582 (36%), Positives = 305/582 (52%), Gaps = 30/582 (5%) Query: 15 LVATARGDLPATLVITGGKLVNVCSGEILEGMSVAVQGGRIAYVGKDVSHMIGEGTRVIE 74 L+ A GD A LV+ LVNVCSGEI E +A+ G IA +G+ EG I+ Sbjct: 28 LIDIALGDKKADLVLKNVNLVNVCSGEIYE-TDIAIAHGLIAGLGR------YEGRLEID 80 Query: 75 AAGRYIAPGMLDGHCHIESTQLTVTEFARAVLPLGTTGGFFDAHEIANVFGLKGIRLMLE 134 A Y PG++DGH HIE + L+V EFA+AV+P GTT D HEIANV G+ GIR + + Sbjct: 81 AQDNYAVPGLIDGHTHIEMSMLSVREFAKAVVPRGTTAVVADPHEIANVLGIAGIRALFD 140 Query: 135 EMRGTPLAAYMQVASCVPSAGPE--FETTGASIGPEEVAEAYTWGEDVIALGEVMNFPGV 192 + R T L + SCVPS P ET+GA+I E+ + + +I L EVMN+ GV Sbjct: 141 DARTTALKVFCMAPSCVPSTDPSLGLETSGATIDHTEIRKLLRM-DGIIGLAEVMNYVGV 199 Query: 193 VYGDSKMLGEIQATLRAGRVVDGHFTWPADDWRLPVYAAAGVTGDHECVTAEDVIERVRL 252 + + + +I+ +DGH + L Y +G DHE T E+ E++RL Sbjct: 200 IAKEEVVWEKIEIAKALKMPIDGHAPLLSGK-ELNAYVVSGAGSDHENTTYEESQEKLRL 258 Query: 253 GMYAQMRRGSAWHDVAKTITAHTEHGLDPRRMLLVTD-DRSSESLRDEGHMDFVVRHAIS 311 GM +R GS ++ K + +D R +LVTD DR+ L+DEG++D+V+R AI Sbjct: 259 GMRVMVREGSVAKNLKKIVPLL--RTVDTRNCMLVTDGDRTPLDLKDEGYLDYVLRRAIE 316 Query: 312 QGVKPVTAFQMATINTAERFGVARDIGSITPGSCADIILLDGNLADVHVVMTIAAGVVVA 371 +G+ PV A QM TIN A+ F + +IG I PG ADI+LL NL V I G Sbjct: 317 EGIDPVKAVQMCTINPAQWFKLDAEIGCIAPGKIADIVLLK-NLDTFEVEKVIVNG---- 371 Query: 372 ENGIMTASLAPYAYPGEVLASVHLPQLPVAEDFVIRAPIESGSVLTRVIRVIENHVETEE 431 + S + YP + SV + ++ ++FVI + G++ R+I +IE + TEE Sbjct: 372 KPDFAQRSEYSFNYP-QYRESVRIMRVK-PDEFVIE---QEGAIKARIIGLIEGELLTEE 426 Query: 432 LILDLPVSEGRLQVGNGLCKIAVLERHKGTGNKSVGVAAGIGFHEPAAIAMTVAHDSHNV 491 L+ ++ +++ + +I VLERH +GN +G G G + AIA T+AHDSHN+ Sbjct: 427 LVEEI----SGIEIARDILEIGVLERHHYSGNMGLGFVKGFGL-KIGAIASTIAHDSHNI 481 Query: 492 LVIGNDDGLMXXXXXXXXXX-XXXXXXXXXXXXXLFPLAIAGLMSVEPFEMXXXXXXXXX 550 +VIG D+ M L IAGLMS + Sbjct: 482 VVIGTDEEDMALACNRLKDIGGGIVLCNGKEVTSELKLPIAGLMSDNGLDYVMRKQKEMD 541 Query: 551 XXLYDSGCTLNYAFMTLSLLALAVIPTLRISDKGLVRISPEE 592 + + GC L F+ +S LAL VIP L+I+DKGLV ++ E Sbjct: 542 DNISEMGCKLPAPFIAISFLALPVIPKLKITDKGLVDVAKRE 583 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 796,171,905 Number of extensions: 31846413 Number of successful extensions: 78281 Number of sequences better than 1.0e-05: 116 Number of HSP's gapped: 77960 Number of HSP's successfully gapped: 117 Length of query: 601 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 470 Effective length of database: 401,559,609 Effective search space: 188733016230 Effective search space used: 188733016230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)