BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0016.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAJ49300.1| unknown [environmental sequence] 187 3e-46 ref|ZP_00131123.1| COG1079: Uncharacterized ABC-type transport s... 172 7e-42 gb|EAJ15557.1| unknown [environmental sequence] 171 2e-41 ref|NP_069722.1| ribose ABC transporter, permease protein (rbsC-... 170 3e-41 gb|EAC97424.1| unknown [environmental sequence] 167 3e-40 >gb|EAJ49300.1| unknown [environmental sequence] Length = 309 Score = 187 bits (475), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 114/314 (36%), Positives = 161/314 (51%), Gaps = 18/314 (5%) Query: 1 MDFTTQLLIAAISXXXXXXXXXXXXXXNERAGIIQLGAEGLMLMGAVTTCIVYIRSGNXX 60 M+F QLLIAA+ +ERAG+I LG EGLML+GA+ +V + +G+ Sbjct: 1 MEFLVQLLIAAVEMGTPLLLATLGGVISERAGVINLGMEGLMLVGALAAFVVMLHTGSPI 60 Query: 61 XXXXXXXXXXXXXXXXHAFLCVTLRANQTMSGLAMTLFGSGLSAYLGKSISG-------- 112 H +C+ LRANQ SGLA+TLFG+GLS G S+ G Sbjct: 61 LAVALAAIAGGLVTMLHGLVCLMLRANQIASGLALTLFGTGLSGLFGSSLVGKTFNPIED 120 Query: 113 IPLPGTSPKLDLGWVKGIPVVGDIFGRMDGLTWFSXXXXXXXXXXIHRTSWGLHLRAVGD 172 IP+P ++ IP++G+ F D L +FS + RT GL++R++G+ Sbjct: 121 IPIP---------FLHKIPLIGEAFFNQDILVYFSYFCAVLTWWVLFRTRLGLNIRSMGE 171 Query: 173 SPATADVMGIRVQLIRYSYXXXXXXXXXXXXXDMVLAYAPTWNEGLTAGRGWIAVGLVIF 232 +P D +G+ V R+ +A P W + +TAGRGWIAV LVIF Sbjct: 172 APEVCDSLGLSVLAYRFWSLVVGGGLIGIGGAYFSIAMNPYWVDFITAGRGWIAVALVIF 231 Query: 233 ARWNPLRALFCAYFFGALDSLGFRIQLLGSIIPPYFLKMIPYVVTILVLMYLGYRN-RNK 291 A W+PL+A+ AY FG +L R+Q LG + PY KM+PY +TILVL + +N R Sbjct: 232 ALWHPLKAMAGAYLFGLALALELRLQTLGLNVSPYIFKMMPYFLTILVLTVVTIKNARRD 291 Query: 292 PSGTPESLGTPYIR 305 P +LG + R Sbjct: 292 IKVMPAALGQVFFR 305 >ref|ZP_00131123.1| COG1079: Uncharacterized ABC-type transport system, permease component [Desulfovibrio desulfuricans G20] Length = 331 Score = 172 bits (437), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 102/281 (36%), Positives = 151/281 (53%), Gaps = 5/281 (1%) Query: 29 ERAGIIQLGAEGLMLMGAVTTCIVYIRSGNXXXXXXXXXXXXXXXXXXHAFLCVTLRANQ 88 ER+G++ LG EG+ML+GA+ + +GN HAF +TLR NQ Sbjct: 52 ERSGVLNLGVEGMMLVGALCGVAAGLATGNVWLGVAGGMLAAGLFSLIHAFFSITLRVNQ 111 Query: 89 TMSGLAMTLFGSGLSAYLGKSISGIPLPGTSPKL-DLGWVKGIPVVGDIFGRMDGLTWFS 147 T+SGLA+T+ G+GL+++LG++ G K+ ++ ++ IPVVG IF L + + Sbjct: 112 TLSGLALTILGAGLASFLGRAYIG--KAALRMKVWNVPYLHDIPVVGKIFFTHTPLVYVA 169 Query: 148 XXXXXXXXXXIHRTSWGLHLRAVGDSPATADVMGIRVQLIRYSYXXXXXXXXXXXXXDMV 207 + RT GL +RA G+ +AD MG+ V L+RY + Sbjct: 170 YVLLPLAAWVLLRTRTGLKIRAAGEDAGSADAMGVNVVLLRYLCTFFGGCMAGLGGAYLS 229 Query: 208 LAYAPTWNEGLTAGRGWIAVGLVIFARWNPLRALFCAYFFGALDSLGFRIQLLG-SIIPP 266 +AY P W E +T G+GW+A+ +VIFA W P RA A FG L +L F Q G +IP Sbjct: 230 IAYTPGWKENMTMGQGWVAIAMVIFATWYPFRAFLGALLFGGLTALQFYFQATGIEVIPV 289 Query: 267 YFLKMIPYVVTILVLMYLGYRNRNK-PSGTPESLGTPYIRE 306 L+M PY++TILVL+ + ++ + G P SLG P+ RE Sbjct: 290 NLLRMFPYLITILVLIVVMRLDKTRGRGGAPASLGVPFSRE 330 >gb|EAJ15557.1| unknown [environmental sequence] Length = 284 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 104/275 (37%), Positives = 141/275 (51%), Gaps = 1/275 (0%) Query: 29 ERAGIIQLGAEGLMLMGAVTTCIVYIRSGNXXXXXXXXXXXXXXXXXXHAFLCVTLRANQ 88 ER+G++ LG EG+MLMGAV I +G+ A + +TL ANQ Sbjct: 7 ERSGVLNLGQEGMMLMGAVIGFIAATATGSLSMGVLAAMLGGVLMAMLFALMAITLAANQ 66 Query: 89 TMSGLAMTLFGSGLSAYLGKSISGIPLPGTSPKLDLGWVKGIPVVGDIFGRMDGLTWFSX 148 +GLA+T+FG GLS+++G G + G K+ + + IPV+G + D L + S Sbjct: 67 YAAGLALTIFGIGLSSFVGSGFVGQSIDGFD-KIAIPLLSDIPVIGQVLFNQDLLVYASL 125 Query: 149 XXXXXXXXXIHRTSWGLHLRAVGDSPATADVMGIRVQLIRYSYXXXXXXXXXXXXXDMVL 208 + + GL LRAVG+SP A+ G+RV +RY + L Sbjct: 126 LIFVLVFCFLKYSRGGLILRAVGESPEAANANGLRVLPVRYMAVAFGGAMAGLAGAYLSL 185 Query: 209 AYAPTWNEGLTAGRGWIAVGLVIFARWNPLRALFCAYFFGALDSLGFRIQLLGSIIPPYF 268 AY P W E +TAGRGWIA+ LV+FA W P R L AY FGA L +Q LG Sbjct: 186 AYTPMWTENMTAGRGWIALALVVFATWKPERVLLGAYLFGAASILHLVLQGLGWNSSTEL 245 Query: 269 LKMIPYVVTILVLMYLGYRNRNKPSGTPESLGTPY 303 L M+PYVVTI+VL+ L + TP S+G PY Sbjct: 246 LAMLPYVVTIIVLVLLSWNPARTRLNTPLSIGQPY 280 >ref|NP_069722.1| ribose ABC transporter, permease protein (rbsC-2) [Archaeoglobus fulgidus DSM 4304] pir||A69361 ribose ABC transporter, permease protein (rbsC-2) homolog - Archaeoglobus fulgidus gb|AAB90349.1| ribose ABC transporter, permease protein (rbsC-2) [Archaeoglobus fulgidus DSM 4304] Length = 310 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 158/307 (51%), Gaps = 2/307 (0%) Query: 2 DFTTQLLIAAISXXXXXXXXXXXXXXNERAGIIQLGAEGLMLMGAVTTCIVYIRSGNXXX 61 F LL ++I ER+GI+ LG EG+M+ GA T V + +G+ Sbjct: 5 SFLASLLASSIRAGTPLLYATLGEILTERSGILNLGLEGIMITGAFTGFAVSLATGSPWL 64 Query: 62 XXXXXXXXXXXXXXXHAFLCVTLRANQTMSGLAMTLFGSGLSAYLGKSISGIPLPGTSPK 121 HAF +TLRANQ+++GL + L G G++ +LG++ G P Sbjct: 65 GVLCGGLAGMALAFVHAFFSITLRANQSITGLMLVLLGLGITGFLGRNYIGEVAFYIDP- 123 Query: 122 LDLGWVKGIPVVGDIFGRMDGLTWFSXXXXXXXXXXIHRTSWGLHLRAVGDSPATADVMG 181 + + + IP +G+I D L + + + RT +GL + A G+ P AD MG Sbjct: 124 VKIPVLSDIPYIGEILFSHDPLAYLAIILAAIMWFILFRTRYGLEIIAAGEKPEAADSMG 183 Query: 182 IRVQLIRYSYXXXXXXXXXXXXXDMVLAYAPTWNEGLTAGRGWIAVGLVIFARWNPLRAL 241 + V +RY + LAYA W EG+TAGRGWI + LVIF+ W P RA+ Sbjct: 184 VNVDRVRYLSTLLGGFLVGIGGAYLSLAYAKLWTEGMTAGRGWICLALVIFSGWMPQRAV 243 Query: 242 FCAYFFGALDSLGFRIQLLGSIIPPYFLKMIPYVVTILVLMYLGYRNRNKPSGTPESLGT 301 F AY FG LD L F++Q G + + +KM+PYVVTI+VL++ R R G P +LG Sbjct: 244 FGAYLFGGLDVLSFKLQATGIEVSYHLMKMVPYVVTIVVLLFSVVRKR-AAFGAPAALGI 302 Query: 302 PYIREQR 308 PY+R ++ Sbjct: 303 PYVRGRK 309 >gb|EAC97424.1| unknown [environmental sequence] Length = 284 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 104/282 (36%), Positives = 154/282 (54%), Gaps = 2/282 (0%) Query: 28 NERAGIIQLGAEGLMLMGAVTTCIVYIRSGNXXXXXXXXXXXXXXXXXXHAFLCVTLRAN 87 +ERAG+I LG EGLML+GA+ +V + + + H F+ + LRAN Sbjct: 3 SERAGVINLGMEGLMLVGALVAFVVMLNTDSYIYAVIAATIVSGIVSMLHGFVSLMLRAN 62 Query: 88 QTMSGLAMTLFGSGLSAYLGKSISGIPLPGTSPKLDLGWVKGIPVVGDIFGRMDGLTWFS 147 Q SGLA+T FG+GLS G ++G + S ++ + + IPVVG + D L +FS Sbjct: 63 QIASGLALTFFGTGLSGLFGDKLTGETVEPLS-RIPIPVLNSIPVVGPMLFNQDILVYFS 121 Query: 148 XXXXXXXXXXIHRTSWGLHLRAVGDSPATADVMGIRVQLIRYSYXXXXXXXXXXXXXDMV 207 + +T GL++R++G++P D +G+ V R+ Sbjct: 122 YLCVILTWFLLFKTRLGLNIRSMGEAPEVCDSLGLSVIGYRFFAVVGGGMLIGIGGAYFP 181 Query: 208 LAYAPTWNEGLTAGRGWIAVGLVIFARWNPLRALFCAYFFGALDSLGFRIQLLGSIIPPY 267 LA P W +G+TAGRGWIAV LVIFA W+P++AL AY FG ++ R+Q+LG I PY Sbjct: 182 LALTPYWVDGITAGRGWIAVALVIFAFWHPVKALGGAYLFGIALAMELRLQILGLDISPY 241 Query: 268 FLKMIPYVVTILVLMYLGYRNRNKPSGT-PESLGTPYIREQR 308 FLKM+PY++TILVL + R + P +LG + R ++ Sbjct: 242 FLKMLPYLLTILVLTLITIRYKKLGVKVMPAALGEVFFRGEK 283 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.143 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 372,879,531 Number of extensions: 13416621 Number of successful extensions: 35761 Number of sequences better than 1.0e-05: 335 Number of HSP's gapped: 35022 Number of HSP's successfully gapped: 335 Length of query: 309 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 184 Effective length of database: 417,850,203 Effective search space: 76884437352 Effective search space used: 76884437352 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)