BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0015.p (371 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00125331.1| COG4603: ABC-type uncharacterized transport s... 264 3e-69 ref|NP_790615.1| ABC transporter, permease protein, putative [Ps... 261 2e-68 ref|ZP_00131122.1| COG4603: ABC-type uncharacterized transport s... 256 5e-67 gb|EAK14363.1| unknown [environmental sequence] 241 2e-62 ref|ZP_00016519.1| COG4603: ABC-type uncharacterized transport s... 229 6e-59 >ref|ZP_00125331.1| COG4603: ABC-type uncharacterized transport system, permease component [Pseudomonas syringae pv. syringae B728a] Length = 366 Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 143/347 (41%), Positives = 221/347 (63%), Gaps = 3/347 (0%) Query: 25 MRLEYDASRTRSP-WWSPXXXXXXXXXXCAVFIAANGMSPVAVYDKMFRGAFGTSYGITE 83 + LE ++R+ W SP ++ G++P + YG++E Sbjct: 3 LSLEPRGQQSRAMLWCSPLLAAVLTLVCGSLLFIGLGLNPWVTLHTLLIAPVSDWYGLSE 62 Query: 84 TMVKAIPLLLCGLGIAVAYRISVWNIGAEGQLTVGAMAATAVTIYFPGLSSFWSIALMLV 143 MVK +P+LLC LG+AVAY+ +WNIGAEGQL +GA+A +AV + + S W++ ++L+ Sbjct: 63 LMVKTLPILLCALGLAVAYQARIWNIGAEGQLLLGALAGSAVAVNIIEMESRWALVMVLL 122 Query: 144 FGTAAGALWGLMTAIPRTHFGVNELITSLMLNYVALLALDYVVFGPWKDPKGFNFPGSPM 203 GT AGA W +TA RTHF NE++TS+MLNY+AL L Y V GP KDP G NFP S Sbjct: 123 AGTLAGAAWAGVTAWLRTHFNANEILTSIMLNYIALNLLLYFVHGPLKDPAGMNFPESAT 182 Query: 204 FTAAQSLPVLGAT-RLHIGLIFGLVAVAIYYLMIRFTRWGYELRLIGANPTAARYAGIHI 262 F A LP+L R HIG+ F L+A+ +++++ + G++++++G + AA + G Sbjct: 183 FGDASRLPLLMEDGRAHIGVYFALLALVAVWVLLQRSFVGFQIKVLGLDKRAAGFVGFRE 242 Query: 263 KKHIMIVMLISGGLAGIAGMAEVSGVTHKLMQGISPGYGYTAIIVAWLAKLNPLGLIVTS 322 K+ + + +LISG LAG+AG++EV+G +L+ +SPGYGY AI VA+L +LNP+G++ +S Sbjct: 243 KRLVWLALLISGALAGLAGVSEVTGPIGQLVPQVSPGYGYAAITVAFLGRLNPIGILFSS 302 Query: 323 VLFGGLIVGGYSVQ-TIGLPSSISEMLQGAILFFLIAGDMIHRFRIR 368 +L L +GG S Q T+ LP +I+++ QG +LFFL+A D++ +R R Sbjct: 303 LLIALLYLGGESAQMTLNLPLAITQLFQGMMLFFLLACDVLILYRPR 349 >ref|NP_790615.1| ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO54310.1| ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 366 Score = 261 bits (666), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/347 (40%), Positives = 219/347 (63%), Gaps = 3/347 (0%) Query: 25 MRLEYDASRTRSP-WWSPXXXXXXXXXXCAVFIAANGMSPVAVYDKMFRGAFGTSYGITE 83 + LE ++R+ W SP ++ G++P + YG++E Sbjct: 3 LSLEPRGQQSRAMLWCSPLLAAVLTLICGSLLFIGLGLNPWVTLHTLLIAPVSDLYGLSE 62 Query: 84 TMVKAIPLLLCGLGIAVAYRISVWNIGAEGQLTVGAMAATAVTIYFPGLSSFWSIALMLV 143 MVK +P+LLC LG+AVAY+ +WNIGAEGQL +GA+A +AV + + S W++ ++L+ Sbjct: 63 LMVKTLPILLCALGLAVAYQARIWNIGAEGQLLLGALAGSAVAVNIIEMESRWALVMVLL 122 Query: 144 FGTAAGALWGLMTAIPRTHFGVNELITSLMLNYVALLALDYVVFGPWKDPKGFNFPGSPM 203 GT AGA W +TA RT F NE++TS+MLNY+AL L Y V GP KDP G NFP S Sbjct: 123 AGTLAGAAWAGVTAWLRTQFNANEILTSIMLNYIALNLLLYFVHGPLKDPAGMNFPESAT 182 Query: 204 FTAAQSLPVLGAT-RLHIGLIFGLVAVAIYYLMIRFTRWGYELRLIGANPTAARYAGIHI 262 F A LP+L R HIG+ F L A+ +++++ + G++++++G + AA + G Sbjct: 183 FGDASRLPLLMEDGRAHIGVYFALFALVAVWVLLQRSFVGFQIKVLGLDKRAAGFVGFRE 242 Query: 263 KKHIMIVMLISGGLAGIAGMAEVSGVTHKLMQGISPGYGYTAIIVAWLAKLNPLGLIVTS 322 K+ + + +LISG LAG+AG++EV+G +L+ +SPGYGY AI VA+L +LNP+G++ +S Sbjct: 243 KRLVWLALLISGALAGLAGVSEVAGPIGQLVPQVSPGYGYAAITVAFLGRLNPIGILFSS 302 Query: 323 VLFGGLIVGGYSVQ-TIGLPSSISEMLQGAILFFLIAGDMIHRFRIR 368 +L L +GG S Q T+ LP +I+++ QG +LFFL+A D++ +R R Sbjct: 303 LLIALLYLGGESAQMTLNLPLAITQLFQGMMLFFLLACDVLILYRPR 349 >ref|ZP_00131122.1| COG4603: ABC-type uncharacterized transport system, permease component [Desulfovibrio desulfuricans G20] Length = 433 Score = 256 bits (655), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 135/318 (42%), Positives = 207/318 (65%), Gaps = 2/318 (0%) Query: 53 AVFIAANGMSPVAVYDKMFRGAFGTSYGITETMVKAIPLLLCGLGIAVAYRISVWNIGAE 112 A+ I+A G +P+ Y M RGA G+ YG+ E VKAIPL L GL +A+A + +WNIG E Sbjct: 104 ALVISAYGANPLTAYSLMLRGALGSGYGLAEVAVKAIPLTLTGLAVALAATMQLWNIGCE 163 Query: 113 GQLTVGAMAATAVTIYFPGLSSFWSI-ALMLVFGTAAGALWGLMTAIPRTHFGVNELITS 171 GQ +G + AT +Y W++ +++ G AAG LW L+ A + V+E++++ Sbjct: 164 GQFVMGGIGATWAALYLAPFLPPWAVLPAVILCGAAAGCLWALIPAALKVWTDVSEILST 223 Query: 172 LMLNYVALLALDYVVFGPWKDPKGFNFPGSPMFTAAQSLPVLGATRLHIGLIFGLVAVAI 231 L+LNYVA++ ++++ FGPW+DP GF FPG+ F LP L R+H G++ L A A Sbjct: 224 LLLNYVAIIIVEHLYFGPWRDPGGFGFPGTMTFPQQAMLPRLFGMRIHAGILLALAATAA 283 Query: 232 YYLMIRFTRWGYELRLIGANPTAARYAGIHIKKHIMIVMLISGGLAGIAGMAEVSGVTHK 291 +M+ ++WGY R++GA P AARYAG+++ ++I++VM ISG LAG+AGM EVS + ++ Sbjct: 284 LAVMLGRSKWGYATRVMGAGPRAARYAGMNVGRNILLVMGISGALAGLAGMGEVSAIHYR 343 Query: 292 LMQGISPGYGYTAIIVAWLAKLNPLGLIVTSVLFGGLIVGGYSVQT-IGLPSSISEMLQG 350 L +G + GYG+ IIVA LA + PL + + L G +VGG + + + LP+SIS +L+G Sbjct: 344 LQEGFASGYGFDGIIVACLASMQPLRVPACAALLGVFLVGGEQLSSFMQLPASISRILEG 403 Query: 351 AILFFLIAGDMIHRFRIR 368 A+LF + G+ + R+ IR Sbjct: 404 ALLFGFLLGETVQRYHIR 421 >gb|EAK14363.1| unknown [environmental sequence] Length = 357 Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 130/310 (41%), Positives = 193/310 (62%), Gaps = 2/310 (0%) Query: 60 GMSPVAVYDKMFRGAFGTSYGITETMVKAIPLLLCGLGIAVAYRISVWNIGAEGQLTVGA 119 G P F SYGI+E +VKA PL L +G+A ++ +++NIGAEGQLT+GA Sbjct: 42 GFKPTFALYTFFISPISNSYGISELLVKATPLALIAVGLAFCFKNNLYNIGAEGQLTMGA 101 Query: 120 MAATAVTIYFPGLSSFWSIALMLVFGTAAGALWGLMTAIPRTHFGVNELITSLMLNYVAL 179 + + I+F S W + LM+V G GALWG++ AI + F NE++TSLML Y+AL Sbjct: 102 VFGGGIGIFFHDTSGVWVLPLMIVGGAIGGALWGMIPAILKVKFNTNEILTSLMLVYIAL 161 Query: 180 LALDYVVFGPWKDPKGFNFPGSPMFTAAQSLPVL-GATRLHIGLIFGLVAVAIYYLMIRF 238 L LDY+V GPWKDP G++FP + F + +P+L R+H G+I L AV + + Sbjct: 162 LILDYLVVGPWKDPYGYSFPKTRSFGESGRMPLLFQGLRVHFGIIIALAAVFASWFIFSK 221 Query: 239 TRWGYELRLIGANPTAARYAGIHIKKHIMIVMLISGGLAGIAGMAEVSGVTHKLMQGISP 298 T GY+L++ G +PTA++YAG + I I + SG AGIAG+ EVSG L + ISP Sbjct: 222 TMLGYQLKVTGFSPTASKYAGFNQNNLIYIAFIFSGAFAGIAGLGEVSGPIGLLYRDISP 281 Query: 299 GYGYTAIIVAWLAKLNPLGLIVTSVLFGGLIVGGYSVQT-IGLPSSISEMLQGAILFFLI 357 YG+TAIIVA+L +LNP+G+I S++ +G Q + +P+++ + QG +LFFL+ Sbjct: 282 NYGFTAIIVAFLGRLNPIGIIFASLVIALTYLGAEDAQLFMQIPAAVGFVFQGLVLFFLL 341 Query: 358 AGDMIHRFRI 367 +++ ++I Sbjct: 342 GTELLVNYKI 351 >ref|ZP_00016519.1| COG4603: ABC-type uncharacterized transport system, permease component [Rhodospirillum rubrum] Length = 364 Score = 229 bits (585), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 140/333 (42%), Positives = 202/333 (60%), Gaps = 2/333 (0%) Query: 38 WWSPXXXXXXXXXXCAVFIAANGMSPVAVYDKMFRGAFGTSYGITETMVKAIPLLLCGLG 97 W +P + AA G PVA F + YG+ E VKA PL L G Sbjct: 22 WAAPLLAVGLTLIAGGLLFAALGKDPVAALAGFFLKPLSSLYGLGELGVKAAPLALIAAG 81 Query: 98 IAVAYRISVWNIGAEGQLTVGAMAATAVTIYFPGLSSFWSIALMLVFGTAAGALWGLMTA 157 +AV +R VWNIGAEGQLT+GA+ V + F + + M++ G G W + A Sbjct: 82 LAVGFRGGVWNIGAEGQLTMGAVVGGGVGLAFLESTGPLVLPAMMLCGALGGMAWAAIPA 141 Query: 158 IPRTHFGVNELITSLMLNYVALLALDYVVFGPWKDPKGFNFPGSPMFTAAQSLPVL-GAT 216 + RT F NE++TSLML YVA L L ++V GPW+ P GFNFP + MF A +LPVL T Sbjct: 142 LLRTRFNANEILTSLMLTYVAQLLLSWLVHGPWRSPSGFNFPETEMFGPAATLPVLIEGT 201 Query: 217 RLHIGLIFGLVAVAIYYLMIRFTRWGYELRLIGANPTAARYAGIHIKKHIMIVMLISGGL 276 RLH+G++ LV V ++++ + G++++++G P A YAG ++ I + ML+SGG Sbjct: 202 RLHLGVVLALVVVGAIWVLLGRSFIGFQIKVMGLAPRAGAYAGFSQRRVIWMAMLLSGGA 261 Query: 277 AGIAGMAEVSGVTHKLMQGISPGYGYTAIIVAWLAKLNPLGLIVTSVLFGGLIVGGYSVQ 336 AG+AG+ EV+G +L ISPGYG+TAIIVA+L +L+PLG++ + +GG +VQ Sbjct: 262 AGLAGLFEVAGPIGQLQPAISPGYGFTAIIVAFLGRLHPLGIVFAACFMALTYLGGETVQ 321 Query: 337 -TIGLPSSISEMLQGAILFFLIAGDMIHRFRIR 368 +GLP +++ + QG ILFFL+A D++ R+RIR Sbjct: 322 MDMGLPLAVTGVFQGMILFFLLAADVLIRYRIR 354 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.140 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 513,527,480 Number of extensions: 20284482 Number of successful extensions: 78336 Number of sequences better than 1.0e-05: 698 Number of HSP's gapped: 77760 Number of HSP's successfully gapped: 700 Length of query: 371 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 244 Effective length of database: 412,420,005 Effective search space: 100630481220 Effective search space used: 100630481220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 127 (53.5 bits)