BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0014.p (510 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833512.1| Nucleoside transport ATP-binding protein [Bacil... 393 e-108 emb|CAC14305.1| putative ATP-binding protein of an ABC-transport... 389 e-107 ref|NP_657758.1| ABC_tran, ABC transporter [Bacillus anthracis A... 388 e-106 ref|NP_980122.1| sugar ABC transporter, ATP-binding protein [Bac... 388 e-106 ref|NP_781070.1| sugar transport ATP-binding protein [Clostridiu... 387 e-106 >ref|NP_833512.1| Nucleoside transport ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP10713.1| Nucleoside transport ATP-binding protein [Bacillus cereus ATCC 14579] Length = 510 Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust. Identities = 210/501 (41%), Positives = 300/501 (59%), Gaps = 1/501 (0%) Query: 6 VEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEGEILLH 65 +EM I K F + A++ + GEIHALLGENGAGKST+M++L G+Y+ ++GEI + Sbjct: 5 IEMNNITKVFPGIVANDDITLQVKQGEIHALLGENGAGKSTLMNVLFGLYQPEQGEIKIK 64 Query: 66 GQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSSFWRGSKWIKNKHREIEA 125 G+P +I +P A LG+GMV Q+F LV + T ENI+LG + +G ++ +EI+ Sbjct: 65 GKPVKITNPNIANDLGIGMVHQHFMLVHNFTVTENIILGNEPK-KKGKIAVEEAAKEIQK 123 Query: 126 LAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQLFATL 185 L+EQ+GL + +SVG QQRVEI+KTLYRGAEI+I DEPT+VLTP E +L + Sbjct: 124 LSEQYGLSVDPYAKIQDISVGMQQRVEILKTLYRGAEILIFDEPTAVLTPQEIHELIQIM 183 Query: 186 QVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVGXXXXX 245 + + Q GK++++ THK+KE+M DR +++RKGK I T+ + TDE +LA LMVG Sbjct: 184 KKLVQEGKSIVLITHKLKEIMEVCDRCTIIRKGKGIGTVDVANTDENKLAELMVGRQVNF 243 Query: 246 XXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKELAEVL 305 A P + +L ++NL V A+ G+ L V GEI NGQ EL E + Sbjct: 244 KTEKIDAKPKEEVLSIANLVVHDARQLPAVKGLDLTVRAGEIVGIAGIDGNGQSELIEAI 303 Query: 306 TGLRTWKNGDIIFDGGPVKSASVRGAIDSGISHVPENRMKSGLAGRLGSVDNLLFKSYRS 365 TGLR ++G I G + + VR + GI H+PE+R K GL DN++ ++Y Sbjct: 304 TGLRKVESGSIAIKGKEITNWLVRRITEEGIGHIPEDRHKHGLVLDFSVRDNIVLQTYYK 363 Query: 366 SGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFAREVSHQPKLM 425 + SK G L +K ++ L+E+F+V+TP+ T + LSGGNQQK + AREV P L+ Sbjct: 364 NPFSKKGILNFSKITEKAKALIEQFDVRTPSEQTLARALSGGNQQKAIIAREVDRNPDLL 423 Query: 426 VAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIYNGSIIGES 485 +A PT+GLDVGA +H+ L+E R +G GV RI VIY G I+ Sbjct: 424 IAAQPTRGLDVGAIEFIHKRLIEQRDKGKGVLLLSLELDEILNVSDRIAVIYEGEIVAIV 483 Query: 486 DHEHADREHIGLLMAGIRSKE 506 D + + + +GLLMAG KE Sbjct: 484 DAKETNEQQLGLLMAGGTKKE 504 >emb|CAC14305.1| putative ATP-binding protein of an ABC-transporter [Clostridium sticklandii] Length = 513 Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/496 (40%), Positives = 307/496 (61%) Query: 6 VEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEGEILLH 65 VEM+ I KKFG A++ +D + + GE+HALLGENGAGKST+M++L G+Y +G+I + Sbjct: 15 VEMKSITKKFGDFVANDNIDLTVHRGEVHALLGENGAGKSTLMNILYGLYTPTDGKIFIE 74 Query: 66 GQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSSFWRGSKWIKNKHREIEA 125 G+ A I +P A LG+GMV Q+F LV T AENI+LG + ++ +++A Sbjct: 75 GKEAVIDNPNKAISLGIGMVHQHFMLVPPFTVAENIILGMEPMKTFKQVDMEKAIADVKA 134 Query: 126 LAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQLFATL 185 ++E++GL V ++VG QQRVEI+K LYRGAEI+ILDEPT+VLTP E ++L + Sbjct: 135 ISEKYGLYVDPKARVMDITVGMQQRVEILKALYRGAEILILDEPTAVLTPQEIKELIXII 194 Query: 186 QVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVGXXXXX 245 + + + GKT+I+ THK+KE+ ++D +++R+GK I T+ S TDE +LA +MVG Sbjct: 195 RNLTKEGKTIILITHKLKEIKEAADYCTIIRRGKRIDTVDVSQTDENQLASMMVGREVTF 254 Query: 246 XXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKELAEVL 305 A G +L + +L+ + G AL+G+ L+V GEI NGQ EL EV+ Sbjct: 255 KVDKNDAIYGDTVLKIEDLKAKDNRGLFALNGLDLEVRRGEILGIAGVDGNGQSELVEVI 314 Query: 306 TGLRTWKNGDIIFDGGPVKSASVRGAIDSGISHVPENRMKSGLAGRLGSVDNLLFKSYRS 365 TGL+ ++G ++ +G + + + R +DSGIS++PE+R K GL +N++ ++Y+ Sbjct: 315 TGLKKAESGSVMINGKEIVNTNPRNIMDSGISNIPEDRQKHGLVLDFTVSENMILQNYKK 374 Query: 366 SGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFAREVSHQPKLM 425 SK G L + + ++ EL+ +F+V+ + LSGGNQQK++ AREV++ P L+ Sbjct: 375 ERFSKNGKLLDSNIKQFADELINKFDVRPQNNALKARALSGGNQQKVIIAREVTNDPDLL 434 Query: 426 VAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIYNGSIIGES 485 +A PT+GLDVGA VH+ L+E R +G GV RI VIY G I+G Sbjct: 435 IATQPTRGLDVGAIEFVHKSLIEQRDKGKGVLLVSFELDEIMSVSDRIAVIYEGKIVGIV 494 Query: 486 DHEHADREHIGLLMAG 501 D + A+ +GL+MAG Sbjct: 495 DAKDANENQLGLMMAG 510 >ref|NP_657758.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_846171.1| sugar ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP27657.1| sugar ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 510 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 209/501 (41%), Positives = 296/501 (59%), Gaps = 1/501 (0%) Query: 6 VEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEGEILLH 65 +EM I K F + A++ + GEIHALLGENGAGKST+M++L G+Y+ ++GEI + Sbjct: 5 IEMNNITKVFPGIVANDDITLQVKQGEIHALLGENGAGKSTLMNVLFGLYQPEQGEIKIK 64 Query: 66 GQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSSFWRGSKWIKNKHREIEA 125 G P +I +P A LG+GMV Q+F LV + T ENI+LG + G ++ +EI+ Sbjct: 65 GNPVKITNPNIANDLGIGMVHQHFMLVHNFTVTENIILGNEPK-KNGKIAVEEAAKEIKQ 123 Query: 126 LAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQLFATL 185 L+EQ+GL + +SVG QQRVEI+KTLYRGAEI+I DEPT+VLTP E +L + Sbjct: 124 LSEQYGLAVDPHAKIEDISVGMQQRVEILKTLYRGAEILIFDEPTAVLTPQEIHELIQIM 183 Query: 186 QVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVGXXXXX 245 + + Q GK++I+ THK+KE+M DR +++RKGK I T+ + TDE +LA LMVG Sbjct: 184 KKLVQEGKSIILITHKLKEIMEVCDRCTIIRKGKGIGTVNVAETDEHKLAELMVGRQVNF 243 Query: 246 XXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKELAEVL 305 A P + +L ++NL V A+ G+ L V GEI NGQ EL E + Sbjct: 244 KTEKIEAKPKEEVLSIANLIVHDTRKLPAVKGLDLTVRAGEIVGIAGIDGNGQSELIEAI 303 Query: 306 TGLRTWKNGDIIFDGGPVKSASVRGAIDSGISHVPENRMKSGLAGRLGSVDNLLFKSYRS 365 TGLR ++G I G + + VR + GI H+PE+R K GL DN++ ++Y Sbjct: 304 TGLRKVESGSIAIKGKEITNWPVRRITEEGIGHIPEDRHKHGLVLDFSVRDNIVLQTYYK 363 Query: 366 SGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFAREVSHQPKLM 425 + SK G L +K ++ L+E+F+V+TP+ T + LSGGNQQK + AREV P L+ Sbjct: 364 NPFSKKGILNFSKITQKAKALIEQFDVRTPSEQTLARALSGGNQQKAIIAREVDRNPDLL 423 Query: 426 VAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIYNGSIIGES 485 +A PT+GLDVGA +H+ L+E R G V R+ VIY G I+ Sbjct: 424 IAAQPTRGLDVGAIEFIHKKLIEQRDNGKAVLLLSLELDEILNVSDRVAVIYEGKIVAIV 483 Query: 486 DHEHADREHIGLLMAGIRSKE 506 D + + + +GLLMAG KE Sbjct: 484 DAKETNEQQLGLLMAGGTGKE 504 >ref|NP_980122.1| sugar ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS42730.1| sugar ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 510 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 209/501 (41%), Positives = 297/501 (59%), Gaps = 1/501 (0%) Query: 6 VEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEGEILLH 65 +EM I K F + A++ + GEIHALLGENGAGKST+M++L G+Y+ ++GEI + Sbjct: 5 IEMNNITKVFPGIVANDDITLQVKQGEIHALLGENGAGKSTLMNVLFGLYQPEQGEIKIK 64 Query: 66 GQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSSFWRGSKWIKNKHREIEA 125 G+P +I +P A LG+GMV Q+F LV + T ENI+LG + G ++ +EI+ Sbjct: 65 GKPVKITNPNIANDLGIGMVHQHFMLVHNFTVTENIILGNEPK-KNGKIAVEEAAKEIKQ 123 Query: 126 LAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQLFATL 185 L+EQ+GL + +SVG QQRVEI+KTLYRGAEI+I DEPT+VLTP E +L + Sbjct: 124 LSEQYGLAVDPHAKIEDISVGMQQRVEILKTLYRGAEILIFDEPTAVLTPQEIHELIQIM 183 Query: 186 QVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVGXXXXX 245 + + Q GK++I+ THK+KE+M DR +++RKGK I T+ + TDE +LA LMVG Sbjct: 184 KKLVQEGKSIILITHKLKEIMEVCDRCTIIRKGKGIGTVDVAETDEHKLAELMVGRQVNF 243 Query: 246 XXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKELAEVL 305 A P + +L ++NL V A+ G+ L V GEI NGQ EL E + Sbjct: 244 KTEKIEAKPMEEVLSIANLIVHDTRKLPAVKGLDLTVRAGEIVGIAGIDGNGQSELIEAI 303 Query: 306 TGLRTWKNGDIIFDGGPVKSASVRGAIDSGISHVPENRMKSGLAGRLGSVDNLLFKSYRS 365 TGLR ++G I G + + VR + GI H+PE+R K GL DN++ ++Y Sbjct: 304 TGLRKVESGSIAIKGKEITNWPVRRITEEGIGHIPEDRHKHGLVLDFSVRDNIVLQTYYK 363 Query: 366 SGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFAREVSHQPKLM 425 + SK G L +K ++ L+E+F+V+TP+ T + LSGGNQQK + AREV P L+ Sbjct: 364 NPFSKKGILNFSKITEKAKALIEQFDVRTPSEQTLARALSGGNQQKAIIAREVDRNPDLL 423 Query: 426 VAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIYNGSIIGES 485 +A PT+GLDVGA +H+ L+E R G V R+ VIY G I+ Sbjct: 424 IAAQPTRGLDVGAIEFIHKKLIEQRDNGKAVLLLSLELDEILNVSDRVAVIYEGKIVAIV 483 Query: 486 DHEHADREHIGLLMAGIRSKE 506 D + + + +GLLMAG KE Sbjct: 484 DAKETNEQQLGLLMAGGTGKE 504 >ref|NP_781070.1| sugar transport ATP-binding protein [Clostridium tetani E88] gb|AAO35007.1| sugar transport ATP-binding protein [Clostridium tetani E88] Length = 514 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 210/496 (42%), Positives = 298/496 (60%) Query: 6 VEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEGEILLH 65 VEM+GI K F A+ VDF GEIH LLGENGAGK+T+M++L G+Y+ + GEI + Sbjct: 5 VEMKGITKVFPGTIANEDVDFELKKGEIHVLLGENGAGKTTLMNILYGLYQPEGGEIYIK 64 Query: 66 GQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSSFWRGSKWIKNKHREIEA 125 GQ A +++PKDA LGVGMV Q+F LV + T AEN++LG++ I+ +E + Sbjct: 65 GQKANLKNPKDAIKLGVGMVHQHFMLVHNFTVAENMILGQEPKKGSLKIDIEKAKKETKE 124 Query: 126 LAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQLFATL 185 LA+++G D V ++VG+QQ+VEI+K LYRGAEI+ILDEPT+VLTP E E+L L Sbjct: 125 LADKYGFNISPDDIVEDITVGQQQKVEILKALYRGAEILILDEPTAVLTPQEIEELGKIL 184 Query: 186 QVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVGXXXXX 245 + + + GK++I+ THK+KEVM+ SDR++V+R+GK I T+ T TD LA LMVG Sbjct: 185 KNLVKEGKSIILITHKLKEVMSMSDRVTVIRRGKYIDTVKTKDTDIDGLAELMVGRKVNL 244 Query: 246 XXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKELAEVL 305 G+ +L + NL+ G AL G++L++ EGEI NGQ EL E + Sbjct: 245 VIEKEETKLGESILKIENLKAKDQRGLPALKGVNLELREGEILGIAGVDGNGQTELIETI 304 Query: 306 TGLRTWKNGDIIFDGGPVKSASVRGAIDSGISHVPENRMKSGLAGRLGSVDNLLFKSYRS 365 GLR G+I G + + + + GI+HVPE+R K GL V+N + + Sbjct: 305 VGLRKSTEGNIYLKGENITGKTTKEITELGIAHVPEDRHKRGLVLGYSLVENSVLGIHDK 364 Query: 366 SGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFAREVSHQPKLM 425 + +K + K R S++L+E F+V+TP D LSGGNQQKL+ ARE+ P ++ Sbjct: 365 APFAKGIIMDYDKIREHSKKLIENFDVRTPNEDVVASSLSGGNQQKLIVAREIEKDPAMI 424 Query: 426 VAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIYNGSIIGES 485 +AV PT+GLDVGA +H+ L+ R RG GV RI V+Y G I+ Sbjct: 425 IAVQPTRGLDVGAIEYIHKRLVGERDRGRGVLLVSLELDEVMSLSDRIAVMYEGEIVDVL 484 Query: 486 DHEHADREHIGLLMAG 501 D + A + +G+LMAG Sbjct: 485 DAKDATEQKLGILMAG 500 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 653,150,072 Number of extensions: 24539900 Number of successful extensions: 161345 Number of sequences better than 1.0e-05: 17274 Number of HSP's gapped: 137537 Number of HSP's successfully gapped: 19130 Length of query: 510 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 380 Effective length of database: 404,274,708 Effective search space: 153624389040 Effective search space used: 153624389040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)