BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0006.p (141 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_781111.1| conserved protein [Clostridium tetani E88] >gi|... 197 5e-50 ref|NP_694138.1| hypothetical protein OB3216 [Oceanobacillus ihe... 179 1e-44 ref|NP_627983.1| conserved hypothetical protein [Streptomyces co... 163 1e-39 gb|EAG01178.1| unknown [environmental sequence] 156 1e-37 ref|ZP_00101154.1| hypothetical protein [Desulfitobacterium hafn... 155 4e-37 >ref|NP_781111.1| conserved protein [Clostridium tetani E88] gb|AAO35048.1| conserved protein [Clostridium tetani E88] Length = 137 Score = 197 bits (502), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 86/130 (66%), Positives = 114/130 (87%) Query: 11 QEGGRAMAMFNGLLGNATQVALPDVQREYAQILAPQEKIERAYKLVRDMFIFTDKRLILV 70 +G M +F+GL+GNA++V V++EYA ILAP EKIE++YKL+RDMFIFT+KRLILV Sbjct: 7 NKGDINMGIFDGLMGNASEVNSEQVKKEYAHILAPNEKIEKSYKLIRDMFIFTNKRLILV 66 Query: 71 DKQGVTGKKTEYHSIPYKSITHYSVETAGHFDLDAELCLYVSGGALPLKKTFNKSVNIYE 130 DKQGVTGKKTEYHSIPY++ITH+S+ET GHFDLDAEL +++SG + P++K FNKS+NIYE Sbjct: 67 DKQGVTGKKTEYHSIPYRAITHFSIETVGHFDLDAELKIWISGSSTPVEKQFNKSLNIYE 126 Query: 131 VQAVLSQYIL 140 +Q+VL++Y+L Sbjct: 127 LQSVLAEYVL 136 >ref|NP_694138.1| hypothetical protein OB3216 [Oceanobacillus iheyensis HTE831] dbj|BAC15172.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 125 Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 78/124 (62%), Positives = 103/124 (83%) Query: 17 MAMFNGLLGNATQVALPDVQREYAQILAPQEKIERAYKLVRDMFIFTDKRLILVDKQGVT 76 M +F+G++GNA++V ++ E+ Q+LA E IER YKL+RD+FIFT+KRLILVDKQGVT Sbjct: 1 MGLFDGIMGNASEVDNGKIEEEFQQVLAESENIERTYKLIRDLFIFTNKRLILVDKQGVT 60 Query: 77 GKKTEYHSIPYKSITHYSVETAGHFDLDAELCLYVSGGALPLKKTFNKSVNIYEVQAVLS 136 GKK E HSIPYK+I H+S+ETAG FDLDAEL +++SG ++P +K FNKS+NIYEVQ VL+ Sbjct: 61 GKKMEIHSIPYKNIVHFSIETAGSFDLDAELKIWISGNSVPFQKQFNKSLNIYEVQTVLA 120 Query: 137 QYIL 140 Y+L Sbjct: 121 SYVL 124 >ref|NP_627983.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] emb|CAC08474.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 121 Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 72/120 (60%), Positives = 96/120 (80%) Query: 22 GLLGNATQVALPDVQREYAQILAPQEKIERAYKLVRDMFIFTDKRLILVDKQGVTGKKTE 81 L GNA + Q+EYA++L E++ AY L+RD +FTD+RLILVDKQG+TGKKTE Sbjct: 2 ALFGNAHSIDPAQAQQEYARLLGQGEQVHAAYLLIRDTILFTDRRLILVDKQGITGKKTE 61 Query: 82 YHSIPYKSITHYSVETAGHFDLDAELCLYVSGGALPLKKTFNKSVNIYEVQAVLSQYILK 141 YHSIPY+SITH++VETAGHFDLDAEL +++SG P++KTF K V+IYEVQA+L+Q++ + Sbjct: 62 YHSIPYRSITHFAVETAGHFDLDAELKIWLSGSQTPVQKTFTKGVDIYEVQAILTQFVAR 121 >gb|EAG01178.1| unknown [environmental sequence] Length = 126 Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 66/125 (52%), Positives = 97/125 (77%) Query: 17 MAMFNGLLGNATQVALPDVQREYAQILAPQEKIERAYKLVRDMFIFTDKRLILVDKQGVT 76 M +F+GLLGNA Q+ L D++ E++QIL P EK+++AYK++RD+ +FTD+RLI VDKQG+T Sbjct: 1 MGLFSGLLGNAGQIDLADIETEFSQILLPDEKLQQAYKVIRDLIVFTDRRLIFVDKQGLT 60 Query: 77 GKKTEYHSIPYKSITHYSVETAGHFDLDAELCLYVSGGALPLKKTFNKSVNIYEVQAVLS 136 G K E+ S+PY+SI +S +T GHFDL+++L +++SG PL KTFNK +I +VQ L+ Sbjct: 61 GSKREFMSVPYRSIVRFSAQTKGHFDLESDLHIWLSGADSPLTKTFNKDGSILDVQKALA 120 Query: 137 QYILK 141 QY + Sbjct: 121 QYCCR 125 >ref|ZP_00101154.1| hypothetical protein [Desulfitobacterium hafniense] Length = 125 Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 65/125 (52%), Positives = 96/125 (76%) Query: 17 MAMFNGLLGNATQVALPDVQREYAQILAPQEKIERAYKLVRDMFIFTDKRLILVDKQGVT 76 M +F+G++GNA+++ +++ E +L E+I +A+KL+RD+ +FT+ RLILVDKQG+T Sbjct: 1 MGIFSGMMGNASEIDTKEIESEVGPLLYDSEQITKAFKLIRDLIVFTNSRLILVDKQGIT 60 Query: 77 GKKTEYHSIPYKSITHYSVETAGHFDLDAELCLYVSGGALPLKKTFNKSVNIYEVQAVLS 136 GKK EYHSIP++SITH++VETAGH DLDAEL +++SG + P+ K F K NI+EVQ L+ Sbjct: 61 GKKIEYHSIPFRSITHFAVETAGHLDLDAELKIWISGNSSPITKEFKKDKNIFEVQKALA 120 Query: 137 QYILK 141 I + Sbjct: 121 NSIAR 125 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 204,021,995 Number of extensions: 7698340 Number of successful extensions: 17530 Number of sequences better than 1.0e-05: 27 Number of HSP's gapped: 17530 Number of HSP's successfully gapped: 27 Length of query: 141 Length of database: 757,237,578 Length adjustment: 102 Effective length of query: 39 Effective length of database: 480,297,480 Effective search space: 18731601720 Effective search space used: 18731601720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)