BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0003.p (205 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_978429.1| mutT/nudix family protein [Bacillus cereus ATCC... 247 1e-64 ref|NP_243955.1| mutator MutT protein [Bacillus halodurans] >gi|... 244 7e-64 ref|NP_655907.1| NUDIX, MutT-like domain [Bacillus anthracis A20... 242 4e-63 ref|NP_831800.1| Phosphohydrolase (MutT/nudix family protein) [B... 238 8e-62 ref|ZP_00111278.1| COG1051: ADP-ribose pyrophosphatase [Nostoc p... 213 2e-54 >ref|NP_978429.1| mutT/nudix family protein [Bacillus cereus ATCC 10987] gb|AAS41037.1| mutT/nudix family protein [Bacillus cereus ATCC 10987] Length = 205 Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 110/205 (53%), Positives = 147/205 (71%) Query: 1 MEQKWLTWAKEIQAIAQTGLAYAKDVYDIERYQALRELSVDILAGYTFESKEKIRLAFAG 60 M KW+ WAK+IQ+IAQ GL Y+KDVYDIER+Q LR++S+ +++ YT E + FA Sbjct: 1 MTVKWIEWAKQIQSIAQAGLTYSKDVYDIERFQQLRDISISMMSHYTKTDWEVVEKLFAS 60 Query: 61 EEGYSTPKVDVRGVIFHEEKILLVREKLDGHWALPGGWADIGLSPREVAVKEIAEESGFQ 120 E GY TPKVD+R V+F EK+L V+EK DG WALPGGWADIG +P EVA KE+ EE+G++ Sbjct: 61 ETGYQTPKVDIRAVVFQNEKLLFVKEKSDGKWALPGGWADIGYTPTEVAAKEVFEETGYE 120 Query: 121 AEALRLLAVLDKKFHHHPPEPYHVYKMFILCRITGGAAAEGVETNGVAFFAEDELPELSE 180 + +LLA+ DK+ H P HVYK+FI C+I GG +ET+ V FF EDELP LS Sbjct: 121 VDHFKLLAIFDKEKHQPSPSATHVYKIFIGCKIIGGEKKTSIETDDVEFFGEDELPNLSI 180 Query: 181 ERNTREQLRIMFEYLRNPEKPVILD 205 RNT EQ++ MF Y++ P+K +++D Sbjct: 181 ARNTEEQIKQMFAYIKEPQKEIVID 205 >ref|NP_243955.1| mutator MutT protein [Bacillus halodurans] pir||A84036 mutator MutT protein BH3089 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06808.1| mutator MutT protein [Bacillus halodurans] Length = 207 Score = 244 bits (624), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 121/205 (59%), Positives = 155/205 (75%) Query: 1 MEQKWLTWAKEIQAIAQTGLAYAKDVYDIERYQALRELSVDILAGYTFESKEKIRLAFAG 60 +E KWL WAK++QAIAQ GL Y+KDVYD+ER++ LRE+S++I+A +T + I+ FA Sbjct: 3 IEPKWLEWAKQLQAIAQAGLTYSKDVYDLERFELLREVSLEIVAHHTEVDRRTIKDLFAH 62 Query: 61 EEGYSTPKVDVRGVIFHEEKILLVREKLDGHWALPGGWADIGLSPREVAVKEIAEESGFQ 120 E GY TPKVD+R V+F EEK+L+V+E DG WALPGGW DIGL+P+EVA KE+ EE+G Sbjct: 63 ETGYPTPKVDIRAVVFKEEKLLMVQETSDGGWALPGGWGDIGLTPKEVAEKEVKEEAGLD 122 Query: 121 AEALRLLAVLDKKFHHHPPEPYHVYKMFILCRITGGAAAEGVETNGVAFFAEDELPELSE 180 +A +LLAV DK H HPP PYHVYK+FI C ITGG +G+ET+ V FFA+DELP LS Sbjct: 123 VKATKLLAVFDKACHPHPPSPYHVYKLFIQCEITGGVPKKGIETSAVGFFAQDELPSLSV 182 Query: 181 ERNTREQLRIMFEYLRNPEKPVILD 205 RNT+ QL I F++ NP+ PV LD Sbjct: 183 ARNTQSQLDIAFKHRLNPDIPVYLD 207 >ref|NP_655907.1| NUDIX, MutT-like domain [Bacillus anthracis A2012] ref|NP_844449.1| mutT/nudix family protein [Bacillus anthracis str. Ames] gb|AAP25935.1| mutT/nudix family protein [Bacillus anthracis str. Ames] Length = 205 Score = 242 bits (617), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 108/205 (52%), Positives = 143/205 (69%) Query: 1 MEQKWLTWAKEIQAIAQTGLAYAKDVYDIERYQALRELSVDILAGYTFESKEKIRLAFAG 60 M KW+ W K+IQ+IAQ GL Y+KDVYDIER+Q LR++S+ +++ YT E + FA Sbjct: 1 MTVKWIDWVKQIQSIAQAGLTYSKDVYDIERFQQLRDISISMMSHYTKTDWEVVEKLFAS 60 Query: 61 EEGYSTPKVDVRGVIFHEEKILLVREKLDGHWALPGGWADIGLSPREVAVKEIAEESGFQ 120 E GY TPKVD+R V+F E++L V+EK DG WALPGGWADIG +P EVA KE+ EE+GF+ Sbjct: 61 ETGYQTPKVDIRAVVFQNERLLFVKEKSDGKWALPGGWADIGYTPTEVAAKEVLEETGFE 120 Query: 121 AEALRLLAVLDKKFHHHPPEPYHVYKMFILCRITGGAAAEGVETNGVAFFAEDELPELSE 180 E +L A+ DK+ H P HVYK+FI C+I GG +ET V FF E+ELP LS Sbjct: 121 VEDFKLFAIFDKEKHQPSPSATHVYKIFIGCKIIGGEKKTSIETEDVEFFGENELPNLSI 180 Query: 181 ERNTREQLRIMFEYLRNPEKPVILD 205 RNT EQ++ MF Y++ P+K ++D Sbjct: 181 ARNTEEQIKEMFAYMKEPQKETLID 205 >ref|NP_831800.1| Phosphohydrolase (MutT/nudix family protein) [Bacillus cereus ATCC 14579] gb|AAP09001.1| Phosphohydrolase (MutT/nudix family protein) [Bacillus cereus ATCC 14579] Length = 205 Score = 238 bits (606), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 106/205 (51%), Positives = 144/205 (70%) Query: 1 MEQKWLTWAKEIQAIAQTGLAYAKDVYDIERYQALRELSVDILAGYTFESKEKIRLAFAG 60 M KW+ W K+IQ+IAQ GL Y+KDVYDIER+Q LR++S+ +++ YT E + FA Sbjct: 1 MTIKWIDWVKQIQSIAQAGLTYSKDVYDIERFQQLRDISISMMSHYTKTDWEVVEKLFAS 60 Query: 61 EEGYSTPKVDVRGVIFHEEKILLVREKLDGHWALPGGWADIGLSPREVAVKEIAEESGFQ 120 E GY TPKVD+R V+F EK+L V+EK DG WALPGGWAD+G +P EVA KE+ EE+G++ Sbjct: 61 ETGYQTPKVDIRAVVFQNEKLLFVKEKSDGKWALPGGWADVGYTPTEVAAKEVFEETGYE 120 Query: 121 AEALRLLAVLDKKFHHHPPEPYHVYKMFILCRITGGAAAEGVETNGVAFFAEDELPELSE 180 + +LLA+ DK+ H P HVYK+FI C I GG +ET V FF E+ELP LS Sbjct: 121 VDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENELPNLSI 180 Query: 181 ERNTREQLRIMFEYLRNPEKPVILD 205 RNT +Q++ MF Y+++P+K ++D Sbjct: 181 ARNTEDQIKEMFAYMKDPQKEKLID 205 >ref|ZP_00111278.1| COG1051: ADP-ribose pyrophosphatase [Nostoc punctiforme] Length = 235 Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 106/205 (51%), Positives = 143/205 (69%) Query: 1 MEQKWLTWAKEIQAIAQTGLAYAKDVYDIERYQALRELSVDILAGYTFESKEKIRLAFAG 60 ME KWL WA+++QAIAQ GL Y++ +DIERY+ LR ++ +I+A Y+ + F+ Sbjct: 31 METKWLEWAQKLQAIAQNGLTYSEGPFDIERYKQLRAIATEIMATYSNVEHSYVLDLFSR 90 Query: 61 EEGYSTPKVDVRGVIFHEEKILLVREKLDGHWALPGGWADIGLSPREVAVKEIAEESGFQ 120 E GY+TPKVDVR IF+E ILLV+EK DG W+LPGGWAD+G SP EV VKE+ EESG+Q Sbjct: 91 EVGYATPKVDVRAAIFYENTILLVKEKADGCWSLPGGWADVGESPSEVVVKEVYEESGYQ 150 Query: 121 AEALRLLAVLDKKFHHHPPEPYHVYKMFILCRITGGAAAEGVETNGVAFFAEDELPELSE 180 A A++LLAV D+ HPP P++VYK+F C + GG+ + +ET V FF+ED LPELS Sbjct: 151 ARAIKLLAVYDRNKQGHPPLPFYVYKLFFKCELIGGSPSSSIETEDVGFFSEDALPELSL 210 Query: 181 ERNTREQLRIMFEYLRNPEKPVILD 205 R T Q+ +F++ R P+ P D Sbjct: 211 GRVTPAQITRLFQHYRQPDLPTDFD 235 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 321,455,907 Number of extensions: 12780917 Number of successful extensions: 31358 Number of sequences better than 1.0e-05: 81 Number of HSP's gapped: 31413 Number of HSP's successfully gapped: 81 Length of query: 205 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 85 Effective length of database: 431,425,698 Effective search space: 36671184330 Effective search space used: 36671184330 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)