BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0478.0002.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_925771.1| quinone oxidoreductase [Gloeobacter violaceus] ... 269 6e-71 ref|NP_925805.1| probable oxidoreductase [Gloeobacter violaceus]... 181 2e-44 ref|ZP_00187321.1| hypothetical protein Rxyl168101 [Rubrobacter ... 151 2e-35 ref|NP_825068.1| putative quinone oxidoreductase [Streptomyces a... 146 7e-34 ref|NP_241229.1| quinone oxidoreductase [Bacillus halodurans] >g... 137 3e-31 >ref|NP_925771.1| quinone oxidoreductase [Gloeobacter violaceus] dbj|BAC90766.1| quinone oxidoreductase [Gloeobacter violaceus PCC 7421] Length = 329 Score = 269 bits (687), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 142/300 (47%), Positives = 192/300 (64%), Gaps = 2/300 (0%) Query: 2 LTIDVAYAGVGYYEVLLSRGEFMSVMPFPITPGLEVSGYVRAIGEGVEGFHIGQPVASMM 61 +TIDV YAGV Y E++ RG F++V P P PG+EV+G++RA+GEGV +GQPVA++ Sbjct: 30 VTIDVEYAGVNYLELMFRRG-FVAV-PLPFVPGIEVAGHIRAVGEGVTDLQVGQPVAALT 87 Query: 62 LKDHNGFATMANVRPEMTIPLDQLGAEMDLATAAAAIVNLTTAYLTLTEVYKMNKGDNVL 121 + G+A + +T LD L +DLA AAA + TAYL L+ + GD VL Sbjct: 88 IVGQGGYAEVVRSPAALTFALDTLERPVDLAAAAAFPCTMITAYLVLSAAARFTPGDAVL 147 Query: 122 IHAAVGGLGSFLGQVAKRLGAGKVLGTVGNLEKTKLAASFGYDELFIRSEFTEQVLKAAG 181 +HAA GGLGS LGQVA+RLGAG+VLGTVG+ +K A + GYD +F+R + E V+ A G Sbjct: 148 VHAAAGGLGSALGQVARRLGAGQVLGTVGSPDKIAYAQAHGYDRVFLREHYREAVIAATG 207 Query: 182 EKGIDAVLDPVGGNVRQQSIDLLNPLGKLVILGNASGEEGTPLSFNQLWFSNKQFAGFTI 241 G+ V+DPVGGN+R +S+++L+ LG+L++LGNA E T S N LW S+K GF + Sbjct: 208 GAGVQIVVDPVGGNLRSESLEVLSVLGQLIVLGNAGNGEDTFQSTNGLWLSSKGVQGFNL 267 Query: 242 GQYAEDKPVVTGKAAREALAMLARKEIHAEIHEVLPMEKAGEALALLEQKNTVGKLILKV 301 P AAR L +AR E+H I VLP+E A EA +EQ+ T GKLILK+ Sbjct: 268 LAVCLQAPEKIKDAARRVLEWIARDELHVPISGVLPLEAADEAHRRIEQRATTGKLILKI 327 >ref|NP_925805.1| probable oxidoreductase [Gloeobacter violaceus] dbj|BAC90800.1| glr2859 [Gloeobacter violaceus PCC 7421] Length = 333 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 158/303 (52%), Gaps = 4/303 (1%) Query: 2 LTIDVAYAGVGYYEVLLSRGEFMSVMPFPITPGLEVSGYVRAIGEGVEGFHIGQPVASMM 61 + +DV YAGV + +++L RG ++ P P PGLEV+G V IG GV GF G+PVA+ Sbjct: 30 IAVDVRYAGVNFADIMLRRGA-LAGTPLPTVPGLEVAGTVAEIGPGVSGFAYGEPVAAFS 88 Query: 62 L---KDHNGFATMANVRPEMTIPLDQLGAEMDLATAAAAIVNLTTAYLTLTEVYKMNKGD 118 K G+A + + +PL + E+ A TAY L +V ++ G+ Sbjct: 89 WTPGKAMGGYAQRVVLDSRLAVPLRRAERELRYEEGAGFACAAVTAYQLLADVARLRPGE 148 Query: 119 NVLIHAAVGGLGSFLGQVAKRLGAGKVLGTVGNLEKTKLAASFGYDELFIRSEFTEQVLK 178 VL+ +A GG+GS Q A+ LGA ++ G VG+ KT+ A + G D + +R + E V Sbjct: 149 TVLVQSAAGGVGSLAVQFARALGAARIFGVVGSASKTEAALAAGCDRVVLREGWIEAVRS 208 Query: 179 AAGEKGIDAVLDPVGGNVRQQSIDLLNPLGKLVILGNASGEEGTPLSFNQLWFSNKQFAG 238 G +G+D L+ VGG+ + +L P G++ G+ASG L LWF K G Sbjct: 209 FTGGRGVDIALESVGGDSLAACLQVLAPFGRVAYFGDASGSGPISLPAFDLWFGTKGVLG 268 Query: 239 FTIGQYAEDKPVVTGKAAREALAMLARKEIHAEIHEVLPMEKAGEALALLEQKNTVGKLI 298 + IG A P AA A+ ++A + + P+E+A EA LE + + GK++ Sbjct: 269 YNIGGLAAASPESWNGAANRAIELIANGAVRLAPTRIYPLERAAEAQHALETRASTGKML 328 Query: 299 LKV 301 L+V Sbjct: 329 LQV 331 >ref|ZP_00187321.1| hypothetical protein Rxyl168101 [Rubrobacter xylanophilus DSM 9941] Length = 335 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 18/308 (5%) Query: 4 IDVAYAGVGYYEVLLSRGEFMSVMPFPITPGLEVSGYVRAIGEGVEGFHIGQPVASMMLK 63 ++V AGV Y + + R +++ P PG EV+G V G GVEG +G+ VA+++ Sbjct: 32 VEVRSAGVNYADAMRRRNRYLAPQSLPFVPGSEVAGVVAEAGPGVEGVSVGERVAALV-- 89 Query: 64 DHNGFATMANVRPEMTIPLDQLGAEMDLATAAAAIVNLTTAYLTLTEVYKMNKGDNVLIH 123 G+A A V IP+ + + AAA + TAYL L + ++ +G+ VL+H Sbjct: 90 GEGGYAEYALVPASGLIPVPE---GLGFDEAAAIPLQGLTAYLVLRDSARLAEGETVLVH 146 Query: 124 AAVGGLGSFLGQVAKRLGAGKVLGTVGNLEKTKLAASFGYDELFIRSE----------FT 173 AA GG+G Q+A+ LGA +V+ T + EK ++A S G D L +E + Sbjct: 147 AAAGGVGYLAVQMARLLGARRVVATASSPEKLEVARSLGADVLIDYTEEGWPESTEEGWP 206 Query: 174 EQVLKAAGEKGIDAVLDPVGGNVRQQSIDLLNPLGKLVILGNASGEEGTPLSFNQLWFSN 233 E+V +A G +G D +L+ VGG+ ++++ L P G++V+ G+ASGE + + +L Sbjct: 207 ERVREATGGRGADVILEMVGGDFPRKNLGCLAPSGRMVVYGSASGER-SEVPLLELMRKQ 265 Query: 234 KQFAGFTIGQYAEDKPV--VTGKAAREALAMLARKEIHAEIHEVLPMEKAGEALALLEQK 291 + +GF + +Y D + TG+A RE L+ L+ + I P+ +A A A LE + Sbjct: 266 QTVSGFWLARYLSDPRLRGRTGEALREILSWLSSGRLRLNIGGRYPLAEAARAHADLEGR 325 Query: 292 NTVGKLIL 299 T GKL+L Sbjct: 326 RTTGKLVL 333 >ref|NP_825068.1| putative quinone oxidoreductase [Streptomyces avermitilis MA-4680] dbj|BAC71603.1| putative quinone oxidoreductase [Streptomyces avermitilis MA-4680] Length = 350 Score = 146 bits (368), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 115/320 (35%), Positives = 156/320 (48%), Gaps = 28/320 (8%) Query: 4 IDVAYAGVGYYEVLLSRGEFMSVMPFPITPGLEVSGYVRAIGEGV--------------- 48 I VAYAGV Y EV G+F + +T GLE +G++ A+G+GV Sbjct: 32 IRVAYAGVNYGEVQHRLGDFGAPEGETVT-GLEAAGHIAALGDGVTGPAVGDGTGVSGRS 90 Query: 49 -------EGFHIGQPVASMMLKDHNGFATMANVRPEMTIPLDQLGAEMDLATAAAAIVNL 101 G +G VA+ L D G+A PL L DL T A + L Sbjct: 91 FGDGDGARGLSVGDAVAAY-LPDGGGYAEYVVAPAAFVFPLGGL----DLRTGGGAALVL 145 Query: 102 TTAYLTLTEVYKMNKGDNVLIHAAVGGLGSFLGQVAKRLGAGKVLGTVGNLEKTKLAASF 161 TTAY L ++ G+ VLIHAA GG+GS Q+A+ LGA V GTVG EK A F Sbjct: 146 TTAYGVLAGAARIAPGETVLIHAAAGGVGSAAAQIARALGATAVYGTVGTPEKAAYAKRF 205 Query: 162 GYDELFIRSEFTEQVLKAAGEKGIDAVLDPVGGNVRQQSIDLLNPLGKLVILGNASGEEG 221 GYD +F+R F + V A G +G+D VLDPVGG R ++L P G+L + G A Sbjct: 206 GYDAVFVRDGFGDAVRAATGGRGVDIVLDPVGGPTRLAGFEVLAPFGRLAVYGEAGRHPD 265 Query: 222 TPLSFNQLWFSNKQFAGFTIGQYAEDKPVVTGKAAREALAMLARKEIHAEIHEVLPMEKA 281 L LW +N+ G+ IG A P + A ALA+ A ++H +I + + A Sbjct: 266 LRLPVLPLWKNNRTLTGYNIGDLARRDPALVRTHALAALALAAAGDLHIDITDEYALPDA 325 Query: 282 GEALALLEQKNTVGKLILKV 301 +A +L+ GK +L V Sbjct: 326 PQAHRVLQSGANRGKAVLAV 345 >ref|NP_241229.1| quinone oxidoreductase [Bacillus halodurans] pir||C83695 quinone oxidoreductase BH0363 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04082.1| quinone oxidoreductase [Bacillus halodurans] Length = 324 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 151/300 (50%), Gaps = 10/300 (3%) Query: 4 IDVAYAGVGYYEVLLSRGEFMSVMPFPITPGLEVSGYVRAIGEGVEGFHIGQPVASMMLK 63 I V V + ++ G +PF PGL+ +GYV +G V +GQ V + Sbjct: 32 IKVVKTSVNFADIKARYGRKGGTLPF--IPGLDAAGYVEKVGREVSDIQVGQRV--IAFP 87 Query: 64 DHNGFATMANVRPEMTIPLDQLGAEMDLATAAAAIVNLTTAYLTLTEVYKMNKGDNVLIH 123 +A + P+ E++ TAAA+ + ++ L V +M +G++VL+H Sbjct: 88 KSGSYAEYVVAAESLVFPIPD---EINFRTAAASPIVSFLSHRLLYNVAQMERGESVLVH 144 Query: 124 AAVGGLGSFLGQVAKRLGAGKVLGTVGNLEKTKLAASFGYDELFIRSE--FTEQVLKAAG 181 AA GG+G+ Q+AK LGAG V+GTVG+ +K A G DE+ E FT+ V + Sbjct: 145 AAAGGVGTTAIQMAKLLGAGTVIGTVGSADKITAAKESGADEVICYEEEDFTKSVQEMTN 204 Query: 182 EKGIDAVLDPVGGNVRQQSIDLLNPLGKLVILGNASGEEGTPLSFNQLWFSNKQFAGFTI 241 G+D +LD V G+V ++S+ L G+LV GN+SG GT + + L S + GF++ Sbjct: 205 GVGVDIILDSVSGSVTEKSLQCLARYGRLVHFGNSSGAIGTIKTID-LHASCRSVLGFSL 263 Query: 242 GQYAEDKPVVTGKAAREALAMLARKEIHAEIHEVLPMEKAGEALALLEQKNTVGKLILKV 301 G + KP + + AR L LA ++ I + A A L+E + GK++L V Sbjct: 264 GTTRKCKPHLLKETARHVLPYLASGKLKVHIGHEYRLTDAANAHRLMESRLNRGKILLNV 323 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 426,137,726 Number of extensions: 17881623 Number of successful extensions: 55623 Number of sequences better than 1.0e-05: 1659 Number of HSP's gapped: 53736 Number of HSP's successfully gapped: 1681 Length of query: 301 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 176 Effective length of database: 417,850,203 Effective search space: 73541635728 Effective search space used: 73541635728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)