BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0069.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_969873.1| phosphonate ABC transporter ATP-binding protein... 117 3e-25 ref|NP_370666.1| hypothetical protein [Staphylococcus aureus sub... 115 9e-25 ref|NP_657589.1| ABC_tran, ABC transporter [Bacillus anthracis A... 111 2e-23 ref|NP_765810.1| transport system protein [Staphylococcus epider... 110 3e-23 ref|NP_980019.1| phosphonate ABC transporter, ATP-binding protei... 109 6e-23 >ref|NP_969873.1| phosphonate ABC transporter ATP-binding protein [Bdellovibrio bacteriovorus HD100] emb|CAE80866.1| phosphonate ABC transporter ATP-binding protein [Bdellovibrio bacteriovorus] Length = 261 Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 123/238 (51%), Gaps = 3/238 (1%) Query: 1 MITVEHLAKAVGEDKIPVLQDIGFQXXXXXXXXXXXXXXXXKSTLLRCLALKEKWDRGNF 60 ++ VE+L+K + + L++I + KSTLLRCL ++ GN Sbjct: 7 LLRVENLSKTY-PNGVQALKNINLEVHPGEFLVVIGLSGSGKSTLLRCLNRLQEPTSGNI 65 Query: 61 RVDGMDIMKSAFAGK-RKISREWAYLEQNAELNPNRTALKNVLIGQSSQTPLWRMVTGMV 119 G +I + A K R + + A + Q+ L P ++ LKNVL+G+ + W+ + GM Sbjct: 66 YFSGQEIGQVQDAEKIRSVRSKMAMIFQHFNLIPRQSVLKNVLMGRLAAKSTWQSLWGMF 125 Query: 120 RSDDYMGAMXXXXXXXXXXXXXXXTSQLSGGERQRVAIARALVHGAKVILADEPVTGLDP 179 + + A QLSGG++QRVAIARAL+ ++LADEPV+ LDP Sbjct: 126 SDAERIEAKENLRLVGIAEKASLRADQLSGGQKQRVAIARALMQKPVLLLADEPVSSLDP 185 Query: 180 KTAENVLETLRKLCKETGLTVITVIP-IELAERYATRIWVLEDGRIKHDVKGRRLTSQ 236 T V++ LR++ +E G+TVI + + L +YATR+ L+DG I K +T + Sbjct: 186 ATCHVVMDYLRRINQEMGITVIANLHFLSLVRKYATRVVALKDGEIVFRGKPEEITEE 243 >ref|NP_370666.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_373379.1| hypothetical protein, similar to transport system protein [Staphylococcus aureus subsp. aureus N315] ref|NP_644931.1| ORFID:MW0116~hypothetical protein, similar to transport system protein [Staphylococcus aureus subsp. aureus MW2] pir||B89775 hypothetical protein SA0137 [imported] - Staphylococcus aureus (strain N315) dbj|BAB41357.1| SA0137 [Staphylococcus aureus subsp. aureus N315] dbj|BAB56304.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] dbj|BAB93981.1| MW0116 [Staphylococcus aureus subsp. aureus MW2] Length = 257 Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 102/187 (54%), Gaps = 1/187 (0%) Query: 42 KSTLLRCLALKEKWDRGNFRVDGMDIMKSAFAGKRKISREWAYLEQNAELNPNRTALKNV 101 KSTLLR + G + G I K+ ++ R + Q+ L + L+NV Sbjct: 43 KSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNIGMIFQHFNLVKRSSVLRNV 102 Query: 102 LIGQSSQTPLWRMVTGMVRSDDYMGAMXXXXXXXXXXXXXXXTSQLSGGERQRVAIARAL 161 L G+ P W+MV G+ +D + AM + +LSGG++QR++IARAL Sbjct: 103 LSGRVGYHPTWKMVLGLFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARAL 162 Query: 162 VHGAKVILADEPVTGLDPKTAENVLETLRKLCKETGLTV-ITVIPIELAERYATRIWVLE 220 +++ILADEPV LDP T + V++ LRK+ +E G+T+ I + ++LA+ Y TRI L Sbjct: 163 CQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLR 222 Query: 221 DGRIKHD 227 DG + +D Sbjct: 223 DGEVVYD 229 >ref|NP_657589.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_846010.1| phosphonate ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP27496.1| phosphonate ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 257 Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 98/187 (52%), Gaps = 1/187 (0%) Query: 42 KSTLLRCLALKEKWDRGNFRVDGMDIMKSAFAGKRKISREWAYLEQNAELNPNRTALKNV 101 KSTLLR + + G ++G I + G R++ R+ + Q+ L T LKNV Sbjct: 41 KSTLLRSVNRLHEITEGEIMIEGESITAAKGKGLRRMRRDIGMIFQSFNLVKRSTVLKNV 100 Query: 102 LIGQSSQTPLWRMVTGMVRSDDYMGAMXXXXXXXXXXXXXXXTSQLSGGERQRVAIARAL 161 L G+ R G+ +D A +LSGG++QRV+IARAL Sbjct: 101 LAGRVGYHSTLRTTLGLFPKEDLELAFQSLKRVNILEKAYARADELSGGQQQRVSIARAL 160 Query: 162 VHGAKVILADEPVTGLDPKTAENVLETLRKLCKETGL-TVITVIPIELAERYATRIWVLE 220 AK+ILADEPV LDP T + VLE L+K+ ++ G+ T++ + I+LA +YATRI L Sbjct: 161 AQEAKIILADEPVASLDPLTTKQVLEDLKKINEDFGITTIVNLHSIDLARQYATRIIGLH 220 Query: 221 DGRIKHD 227 G I D Sbjct: 221 AGEIVFD 227 >ref|NP_765810.1| transport system protein [Staphylococcus epidermidis ATCC 12228] gb|AAO05897.1| transport system protein [Staphylococcus epidermidis ATCC 12228] Length = 257 Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 1/187 (0%) Query: 42 KSTLLRCLALKEKWDRGNFRVDGMDIMKSAFAGKRKISREWAYLEQNAELNPNRTALKNV 101 KSTLLR + +G+ ++G I K+ ++ R + Q+ L T L+NV Sbjct: 43 KSTLLRSVNRLHDISKGDITIEGQSITKARGKKLLEMRRSIGMIFQHFNLVKRSTVLRNV 102 Query: 102 LIGQSSQTPLWRMVTGMVRSDDYMGAMXXXXXXXXXXXXXXXTSQLSGGERQRVAIARAL 161 L G+ P W+M+ G+ +D + A+ + QLSGG++QR++IARAL Sbjct: 103 LSGRVGYHPTWKMILGLFPKEDKVKALDALERVNILDKYDQRSDQLSGGQQQRISIARAL 162 Query: 162 VHGAKVILADEPVTGLDPKTAENVLETLRKLCKETGLTV-ITVIPIELAERYATRIWVLE 220 +ILADEPV LDP T + V++ L+K+ +E G+T+ I + ++LA+ Y +RI L Sbjct: 163 CQEPTIILADEPVASLDPLTTKQVMDDLKKINEELGITILINLHFVDLAKEYGSRIIGLR 222 Query: 221 DGRIKHD 227 G + +D Sbjct: 223 AGELVYD 229 >ref|NP_980019.1| phosphonate ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS42627.1| phosphonate ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 257 Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 68/187 (36%), Positives = 98/187 (52%), Gaps = 1/187 (0%) Query: 42 KSTLLRCLALKEKWDRGNFRVDGMDIMKSAFAGKRKISREWAYLEQNAELNPNRTALKNV 101 KSTLLR + + G ++G I + G R++ R+ + Q+ L T LKNV Sbjct: 41 KSTLLRSVNRLHEITEGEIMIEGESITAAKGKGLRRMRRDIGMIFQSFNLVKRSTVLKNV 100 Query: 102 LIGQSSQTPLWRMVTGMVRSDDYMGAMXXXXXXXXXXXXXXXTSQLSGGERQRVAIARAL 161 L G+ R G+ +D A +LSGG++QRV+IARAL Sbjct: 101 LAGRVGYHSTLRTTLGIFPKEDLELAFQSLKRVNILEKAYARADELSGGQQQRVSIARAL 160 Query: 162 VHGAKVILADEPVTGLDPKTAENVLETLRKLCKETGL-TVITVIPIELAERYATRIWVLE 220 AK+ILADEPV LDP T + VL+ L+K+ ++ G+ T++ + I+LA +YATRI L Sbjct: 161 AQEAKIILADEPVASLDPLTTKQVLDDLKKINEDFGITTIVNLHSIDLARQYATRIIGLH 220 Query: 221 DGRIKHD 227 G I D Sbjct: 221 AGEIVFD 227 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 285,547,752 Number of extensions: 9114702 Number of successful extensions: 72811 Number of sequences better than 1.0e-05: 8484 Number of HSP's gapped: 71414 Number of HSP's successfully gapped: 8608 Length of query: 243 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 121 Effective length of database: 425,995,500 Effective search space: 51545455500 Effective search space used: 51545455500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)