BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0060.p (646 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_830376.1| Methyl-accepting chemotaxis protein [Bacillus c... 341 3e-92 ref|NP_654493.1| MA, Methyl-accepting chemotaxis-like domains (c... 336 1e-90 ref|NP_976945.1| methyl-accepting chemotaxis protein [Bacillus c... 333 7e-90 ref|NP_391002.1| methyl-accepting chemotaxis protein [Bacillus s... 333 1e-89 pir||A54078 methyl-accepting chemotaxis protein mcpB - Bacillus ... 331 4e-89 >ref|NP_830376.1| Methyl-accepting chemotaxis protein [Bacillus cereus ATCC 14579] gb|AAP07577.1| Methyl-accepting chemotaxis protein [Bacillus cereus ATCC 14579] Length = 658 Score = 341 bits (875), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 204/649 (31%), Positives = 365/649 (56%), Gaps = 10/649 (1%) Query: 1 MMLIFTLMLVIPILLVSYFSYSSSKKQLELKMQESTHSSVEMLQGTINETISAAERNVRQ 60 +++ F ++LV+P +++ + SY +K + S ++++L IN+ + + + + Sbjct: 15 LLVSFIIILVLPSIVIGWTSYQQAKTNFNETILNSAKDNIKILDNVINKELDSKKVDATY 74 Query: 61 LSQQVTTADIEA---KNPETKALIELFMKEHPELEVITLGSSSGAWMKSPNIGQQD-YDP 116 ++ T + +A +N + K +E + K HPE+E I GSS+G +++SP I D Y+P Sbjct: 75 FTKLFTQSSYQADQIQNIQNK--LEEYNKLHPEMEAIYTGSSNGQFIQSPAIQMPDGYNP 132 Query: 117 RTRDWFKASMANAGNVTIIDPFVSLTTGNYNLFISESLKDGKGALTTSLALKHMGEMINK 176 RDW+K ++ +G V + P+ S TTGN + +++ +D G L L + ++ Sbjct: 133 TERDWYKEAVKKSGEVIVTAPYKSKTTGNIVITLAKQNEDKSGVLGIDLIINNIVTTSKM 192 Query: 177 VKLGRDGYIFVVDRNKKFVSHPVKKAGDEVAEDV-IQLLDKDSGDLSYTSPDTGLQMRGY 235 V +G++GY+ + D++K V+HP K G+++ E + +L +++GD Y S D G Sbjct: 193 VNIGKEGYVAIFDQDKNVVAHPKMKPGEKLEEKLSKELYKQEAGDFHY-SLD-GEDRNIT 250 Query: 236 YTTDKTTGFKIVGVLSTKEFSDASLPVLYNXXXXXXXXXXXXXXMMFFIIKAITKPILSL 295 + T+K TG+KI G++ +KE +A+ P+ Y +++FII +I KP+ L Sbjct: 251 FKTNKKTGWKIAGIMPSKEIIEAAEPIFYKTVTVLGISLIIGGIVIYFIIASIIKPLKQL 310 Query: 296 NRSARRVSEGYLNEEIRINRTDEIGQLAQNYNLMVGSLRNIVVDISDTSGVLASSSQQLT 355 S++++SEG L E I ++ DEIGQL +++N M SL++++ +I+ ++ +A+SS++LT Sbjct: 311 VISSKKISEGDLTESITVHSKDEIGQLGESFNEMAASLQSVISNINTSASHVAASSEELT 370 Query: 356 ATTEENSRATGYVAELVQNSSXXXXXXXXXXXXXXXXXXXXSSGIQKXXXXXXXXXXXXX 415 A+ ++ S AT + + ++ S + GIQ+ Sbjct: 371 ASMKQTSEATEQITQAIEQVSSGAEIQTKEVEEGATLLEEVTEGIQRVADSSSLVSTASM 430 Query: 416 XXXXXXXXGSRKIAQMSLQMDAIRQSTHQSSELISQLNGLNSQVSEMSSAISNIAVQTNL 475 G + + Q QM I +S QS ++I L+ + Q+ + I +IA QTNL Sbjct: 431 YTKKKAENGGKLVEQTVNQMQLIHESVSQSDKIIGLLDDKSKQIGAILEVIQHIAEQTNL 490 Query: 476 LSLNAGIEAARAGEHGRGFAVVASEVRKLADQSKTTAGNIQDTIEQMTELIDRTYQAIHV 535 L+LNA IEAARAGE GRGFA+VA EVRKLA+QS ++ I ++++ I T +++ Sbjct: 491 LALNAAIEAARAGEQGRGFAIVADEVRKLAEQSGQSSTEIGKLVKEIQFDIKETVSSMN- 549 Query: 536 TVAADVELGIQATTEAKEAFISIEQSTAKINGQIHDISAITEQMSAGAQEVAASVQEISN 595 V A+V+ G+ E K++F I +ST QI + + +QM+ A++V+AS+ EI+ Sbjct: 550 QVGAEVQSGLVVANETKQSFAEILKSTNDTVVQIDSMVDVAKQMTVDAKQVSASINEIAA 609 Query: 596 ISRSTSDAFQNVTAATEQQLASMEEISASSTELSKMAADLQHKIERFKL 644 + + QN+ ++E+QLAS++EI+A++ LS+MA +LQ I +FK+ Sbjct: 610 TIEENAASVQNIAGSSEEQLASVDEINAAAVHLSQMAEELQEMISKFKV 658 >ref|NP_654493.1| MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer) [Bacillus anthracis A2012] ref|NP_843093.1| methyl-accepting chemotaxis protein [Bacillus anthracis str. Ames] gb|AAP24579.1| methyl-accepting chemotaxis protein [Bacillus anthracis str. Ames] Length = 658 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 202/649 (31%), Positives = 359/649 (55%), Gaps = 10/649 (1%) Query: 1 MMLIFTLMLVIPILLVSYFSYSSSKKQLELKMQESTHSSVEMLQGTINETISAAERNV-- 58 +++ F ++L++P +++ + SY +K + +S +V++L IN+ I + + + Sbjct: 15 LLVSFVIVLILPSIVIGWTSYQQAKTNFNETILQSAEDNVKILNNVINKEIDSKKVDAVY 74 Query: 59 -RQLSQQVTTADIEAKNPETKALIELFMKEHPELEVITLGSSSGAWMKSPNIGQQD-YDP 116 +L V+ + +N + K +E + K HPE+E I GSS+G +++SP+I D Y+P Sbjct: 75 FTKLFNGVSYGTDQLQNVQNK--LEEYNKLHPEIEAIYTGSSTGQFIQSPSIQMPDGYNP 132 Query: 117 RTRDWFKASMANAGNVTIIDPFVSLTTGNYNLFISESLKDGKGALTTSLALKHMGEMINK 176 RDW+K + +G V I P+ S TTGN + I++ +D G L L + + Sbjct: 133 TERDWYKEAAKKSGEVVITAPYKSSTTGNIVITIAKQNEDKSGVLGIDLIINDIVNTSKM 192 Query: 177 VKLGRDGYIFVVDRNKKFVSHPVKKAGDEVAEDV-IQLLDKDSGDLSYTSPDTGLQMRGY 235 V +G+ G++ + D++K ++HP K GD++ E V +L +++GD + G Sbjct: 193 VNIGKTGFVAIFDQSKHVIAHPTIKPGDKIEEKVEKELYKQETGDFKFKLD--GDDRNIT 250 Query: 236 YTTDKTTGFKIVGVLSTKEFSDASLPVLYNXXXXXXXXXXXXXXMMFFIIKAITKPILSL 295 + T+K TG+KI G++ +KE +A+ P+ Y +++FII +I P+ L Sbjct: 251 FITNKQTGWKIAGIMPSKEIIEAANPIFYKTLTVIGISLIIGGVLIYFIIASIISPLKQL 310 Query: 296 NRSARRVSEGYLNEEIRINRTDEIGQLAQNYNLMVGSLRNIVVDISDTSGVLASSSQQLT 355 S++++SEG L E I ++ DEIGQL +++N M SL +++ +I+ ++ +A+SS++LT Sbjct: 311 VISSKKISEGDLTETITVHSKDEIGQLGESFNEMAASLHHVISNINTSASHVAASSEELT 370 Query: 356 ATTEENSRATGYVAELVQNSSXXXXXXXXXXXXXXXXXXXXSSGIQKXXXXXXXXXXXXX 415 A+ ++ S AT + + ++ S + GIQ+ Sbjct: 371 ASMKQTSEATEQITQAIEQVSSGAEIQTKEVEEGATLLEEVTEGIQRVADSSSLVSTASM 430 Query: 416 XXXXXXXXGSRKIAQMSLQMDAIRQSTHQSSELISQLNGLNSQVSEMSSAISNIAVQTNL 475 G + + Q QM I +S QS ++I L+ + Q+ + I +IA QTNL Sbjct: 431 YTKKKAEDGGKLVEQTVNQMQLIHESVSQSDKVIVLLDDKSKQIGAILEVIQHIAEQTNL 490 Query: 476 LSLNAGIEAARAGEHGRGFAVVASEVRKLADQSKTTAGNIQDTIEQMTELIDRTYQAIHV 535 L+LNA IEAARAGE GRGFA+VA EVRKLA+QS ++ I ++++ I T ++ + Sbjct: 491 LALNAAIEAARAGEQGRGFAIVADEVRKLAEQSGQSSTEIGKLVKEIQFDIKETVSSMKL 550 Query: 536 TVAADVELGIQATTEAKEAFISIEQSTAKINGQIHDISAITEQMSAGAQEVAASVQEISN 595 V +V+ G+ E K++F I +ST QI ++ + +QM+ A++V+AS+ EI+ Sbjct: 551 -VGTEVQSGLVVANETKQSFAEILKSTDDTVVQIDNMVDVAKQMTVDARQVSASINEIAA 609 Query: 596 ISRSTSDAFQNVTAATEQQLASMEEISASSTELSKMAADLQHKIERFKL 644 + + QN+ ++E+QLAS++EI+A++ LS+MA +LQ I +FK+ Sbjct: 610 TIEENAASVQNIAGSSEEQLASVDEINAAAVHLSQMAEELQEMIGKFKV 658 >ref|NP_976945.1| methyl-accepting chemotaxis protein [Bacillus cereus ATCC 10987] gb|AAS39553.1| methyl-accepting chemotaxis protein [Bacillus cereus ATCC 10987] Length = 658 Score = 333 bits (855), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 202/649 (31%), Positives = 358/649 (55%), Gaps = 10/649 (1%) Query: 1 MMLIFTLMLVIPILLVSYFSYSSSKKQLELKMQESTHSSVEMLQGTINETISAAERNV-- 58 +++ F ++LV+P +++ + SY +K + +S +V++L IN+ I + + + Sbjct: 15 LLVSFVIILVLPSIVIGWTSYQQAKTNFNETILQSAEDNVKILNNVINKEIDSKKVDAVY 74 Query: 59 -RQLSQQVTTADIEAKNPETKALIELFMKEHPELEVITLGSSSGAWMKSPNIGQQD-YDP 116 +L V+ + +N + K +E + K HPE+E I GSS G +++SP+I D Y+P Sbjct: 75 FTKLFNGVSYGTDQLQNVQNK--LEEYNKLHPEIEAIYTGSSMGQFIQSPSIQMPDGYNP 132 Query: 117 RTRDWFKASMANAGNVTIIDPFVSLTTGNYNLFISESLKDGKGALTTSLALKHMGEMINK 176 RDW+K + +G V I P+ S TTGN + I++ +D G L L + + Sbjct: 133 TERDWYKEAAKKSGEVVITAPYKSSTTGNIVITIAKQNEDKSGVLGIDLIINDIVNTSKM 192 Query: 177 VKLGRDGYIFVVDRNKKFVSHPVKKAGDEVAEDV-IQLLDKDSGDLSYTSPDTGLQMRGY 235 V +G+ GY+ + D++K ++HP K GD++ E + +L +++G+ + G Sbjct: 193 VNIGKKGYVAIFDQSKHVIAHPTMKPGDKIEEKLEKELYKQETGEFKFKLE--GDDRNIT 250 Query: 236 YTTDKTTGFKIVGVLSTKEFSDASLPVLYNXXXXXXXXXXXXXXMMFFIIKAITKPILSL 295 + T+K TG+KI G++ +KE +A+ P+ Y +++FII +I P+ L Sbjct: 251 FITNKQTGWKIAGIMPSKEIIEAANPIFYKTLTVIGISLIIGGILIYFIIASIISPLKQL 310 Query: 296 NRSARRVSEGYLNEEIRINRTDEIGQLAQNYNLMVGSLRNIVVDISDTSGVLASSSQQLT 355 S++++SEG L E I ++ DEIGQL +++N M SL+N++ +I+ ++ +A+SS++LT Sbjct: 311 VISSKKISEGDLTESITVHTKDEIGQLGESFNEMAASLQNVISNINTSASHVAASSEELT 370 Query: 356 ATTEENSRATGYVAELVQNSSXXXXXXXXXXXXXXXXXXXXSSGIQKXXXXXXXXXXXXX 415 A+ ++ S AT + + ++ S + GIQ+ Sbjct: 371 ASMKQTSEATEQITQAIEQVSSGAEIQTKEVEEGATLLEEVTEGIQRVADSSSLVSTASM 430 Query: 416 XXXXXXXXGSRKIAQMSLQMDAIRQSTHQSSELISQLNGLNSQVSEMSSAISNIAVQTNL 475 G + + + QM I +S QS ++I L+ + Q+ + I +IA QTNL Sbjct: 431 YTKKKAEDGGKLVEKTVNQMQLIHESVSQSDKVIVLLDDKSKQIGAILEVIQHIAEQTNL 490 Query: 476 LSLNAGIEAARAGEHGRGFAVVASEVRKLADQSKTTAGNIQDTIEQMTELIDRTYQAIHV 535 L+LNA IEAARAGE GRGFA+VA EVRKLA+QS ++ I ++++ I T ++ Sbjct: 491 LALNAAIEAARAGEQGRGFAIVADEVRKLAEQSGQSSTEIGKLVKEIQFDIKETVSSMK- 549 Query: 536 TVAADVELGIQATTEAKEAFISIEQSTAKINGQIHDISAITEQMSAGAQEVAASVQEISN 595 V +V+ G+ E K++F I +ST QI ++ + +QM+ A++V+AS+ EI+ Sbjct: 550 QVGTEVQSGLVVANETKQSFAEILKSTDDTVVQIDNMVDVAKQMTVDARQVSASINEIAA 609 Query: 596 ISRSTSDAFQNVTAATEQQLASMEEISASSTELSKMAADLQHKIERFKL 644 + + QN+ ++E+QLAS++EI+A++ LS+MA +LQ I +FK+ Sbjct: 610 TIEENAASVQNIAGSSEEQLASVDEINAAAVHLSQMAEELQEMIGKFKV 658 >ref|NP_391002.1| methyl-accepting chemotaxis protein [Bacillus subtilis] sp|P39214|MCPA_BACSU Methyl-accepting chemotaxis protein mcpA (H1) pir||B54078 methyl-accepting chemotaxis transducer mcpA - Bacillus subtilis gb|AAA20556.1| transmembrane receptor [Bacillus subtilis] emb|CAB15102.1| methyl-accepting chemotaxis protein [Bacillus subtilis subsp. subtilis str. 168] Length = 661 Score = 333 bits (853), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 203/648 (31%), Positives = 361/648 (55%), Gaps = 6/648 (0%) Query: 1 MMLIFTLMLVIPILLVSYFSYSSSKKQLELKMQESTHSSVEMLQGTINETISAAERNVRQ 60 +++ F +L+IP+++++ F+Y S+ L+ +M S +V+ L IN +I E + Sbjct: 17 LLVSFLSILIIPVVILAIFAYQSASSSLDRQMMGSALENVQQLNEIINTSIGEKENSADY 76 Query: 61 LSQQVTTADIEAK-NPETKALIELFMKEHPELEVITLGSSSGAWMKSPNIGQQD-YDPRT 118 S+ +T AK N + ++ + ++E I + G + + P++ Y+P Sbjct: 77 FSEWLTKEKYNAKSNASIREKFSQYISINKDVESIYTSDTKGHFTRYPDLPMPSGYNPVE 136 Query: 119 RDWFKASMANAGNVTIIDPFVSLTTGNYNLFISESLKDGKGALTTSLALKHMGEMINKVK 178 RDW+K ++AN G V I DP+ + +T + I++ KDG G + ++ ++++ + KV Sbjct: 137 RDWYKKAVANKGKVVITDPYKTASTNTMVVTIAQQTKDGSGVIAINMTIENLLKTTKKVN 196 Query: 179 LGRDGYIFVVDRNKKFVSHPVKKAGDEVAEDVI-QLLDKDSGDLSYTSPDTGLQMRGYYT 237 +G GY F++ ++KK V+HP +++G E+ D + ++L D GD YT G + + + Sbjct: 197 IGTQGYAFIMTKDKKVVAHPNEQSGTELKGDWLDKMLSADKGDFQYTMD--GDKKKMAFD 254 Query: 238 TDKTTGFKIVGVLSTKEFSDASLPVLYNXXXXXXXXXXXXXXMMFFIIKAITKPILSLNR 297 T+K TG+KI G + E +A+ PVL+ +M II++IT P+ L Sbjct: 255 TNKLTGWKIGGTMYLDEIHEAAQPVLHLALIVLAAAIIIGIIVMTLIIRSITTPLKQLVG 314 Query: 298 SARRVSEGYLNEEIRINRTDEIGQLAQNYNLMVGSLRNIVVDISDTSGVLASSSQQLTAT 357 S++R+SEG L E I I DE+G+L +++N M SLR+++ I D+ +A+SS++LTA+ Sbjct: 315 SSKRISEGDLTETIDIRSKDELGELGKSFNNMASSLRSLIHAIQDSVDNVAASSEELTAS 374 Query: 358 TEENSRATGYVAELVQNSSXXXXXXXXXXXXXXXXXXXXSSGIQKXXXXXXXXXXXXXXX 417 + S+AT ++ ++ S + G+ Sbjct: 375 AAQTSKATEHITLAIEQFSNGNEKQNENIETAAEHIYQMNDGLTNMAQASEVITDSSVQS 434 Query: 418 XXXXXXGSRKIAQMSLQMDAIRQSTHQSSELISQLNGLNSQVSEMSSAISNIAVQTNLLS 477 G + + Q QM+ I +S ++ +++ L + ++ + I+ IA QTNLL+ Sbjct: 435 TEIASEGGKLVHQTVGQMNVIDKSVKEAEQVVRGLETKSKDITNILRVINGIADQTNLLA 494 Query: 478 LNAGIEAARAGEHGRGFAVVASEVRKLADQSKTTAGNIQDTIEQMTELIDRTYQAIHVTV 537 LNA IEAARAGE+GRGF+VVA EVRKLA QS +A I+ I ++ + I+ T + +V Sbjct: 495 LNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIIEIVKEIN-TSLGMFQSV 553 Query: 538 AADVELGIQATTEAKEAFISIEQSTAKINGQIHDISAITEQMSAGAQEVAASVQEISNIS 597 +V+ G+ T + + +F I + T +I G++ ++SA +Q+SA ++EV+ + + I++IS Sbjct: 554 NQEVQTGLDITDKTEMSFKRISEMTNQIAGELQNMSATVQQLSASSEEVSGASEHIASIS 613 Query: 598 RSTSDAFQNVTAATEQQLASMEEISASSTELSKMAADLQHKIERFKLE 645 + +S Q++ A+ E+QLASMEEIS+S+ LS MA +L+ +RFK+E Sbjct: 614 KESSAHIQDIAASAEEQLASMEEISSSAETLSSMAEELRDMTKRFKIE 661 >pir||A54078 methyl-accepting chemotaxis protein mcpB - Bacillus subtilis Length = 662 Score = 331 bits (848), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 201/632 (31%), Positives = 354/632 (56%), Gaps = 7/632 (1%) Query: 18 YFSYSSSKKQLELKMQESTHSSVEMLQGTINETISAAERNVRQLSQQVTTADIEAKN--P 75 + SY S+ +L+ ++ + +SV+ T+ + + V S+ + + + K+ Sbjct: 34 FSSYRSASGKLDQEIMGNAKNSVDTFNTTVTNDLGEKAKAVTFFSESLKRSAFKGKSNQE 93 Query: 76 ETKALIELFMKEHPELEVITLGSSSGAWMKSPNIG-QQDYDPRTRDWFKASMANAGNVTI 134 E KA ++ + + I G+ +G ++++P + YDPR R W++ +M G + + Sbjct: 94 EIKAKFSQYVSINQGVARIYGGADNGTYVQAPKEKLPEGYDPRQRPWYQDAMKAGGEIVV 153 Query: 135 IDPFVSLTTGNYNLFISESLKDGKGALTTSLALKHMGEMINKVKLGRDGYIFVVDRNKKF 194 DP+V+ + G+ + I++ LKDG G + + + + E + ++K+G++GY F+ +NK + Sbjct: 154 TDPYVAASDGSMVITIAQELKDGSGVVAMDITIDKLLEQMKQIKVGKEGYAFIATKNKTY 213 Query: 195 VSHPVKKAGDEVAED-VIQLLDKDSGDLSYTSPDTGLQMRGYYTTDKTTGFKIVGVLSTK 253 V+H KAG++++ D V ++ DSG+L YT + +M YTT++ TG+KI G + Sbjct: 214 VAHKNHKAGEKLSGDWVAKMYANDSGELQYTLNNEDKKMT--YTTNELTGWKIAGTMYMD 271 Query: 254 EFSDASLPVLYNXXXXXXXXXXXXXXMMFFIIKAITKPILSLNRSARRVSEGYLNEEIRI 313 E DAS VL ++ FI+++ITKP+ L +S++ +S G L E I I Sbjct: 272 EIKDASKSVLTTGMIVLIASIVAGGILILFIVRSITKPLKRLVQSSKTISRGDLTETIEI 331 Query: 314 NRTDEIGQLAQNYNLMVGSLRNIVVDISDTSGVLASSSQQLTATTEENSRATGYVAELVQ 373 + DE+G+L +++N M SLR+++ I D+ +A+SS+QLTA+ + S+AT ++ ++ Sbjct: 332 HSKDELGELGESFNEMGQSLRSLISAIQDSVNNVAASSEQLTASAGQTSKATEHITMAIE 391 Query: 374 NSSXXXXXXXXXXXXXXXXXXXXSSGIQKXXXXXXXXXXXXXXXXXXXXXGSRKIAQMSL 433 S + G+Q+ G + + Q Sbjct: 392 QFSNGNEEQSRKVESSSHQLNLMNEGLQQVSQTSSDITKASIQSTEIAGTGEKFVQQTVG 451 Query: 434 QMDAIRQSTHQSSELISQLNGLNSQVSEMSSAISNIAVQTNLLSLNAGIEAARAGEHGRG 493 QM++I QS Q+ ++ L G + ++ + I+ IA QTNLL+LNA IEAARAGE GRG Sbjct: 452 QMNSINQSVQQAEAVVKGLEGKSKDITSILRVINGIADQTNLLALNAAIEAARAGESGRG 511 Query: 494 FAVVASEVRKLADQSKTTAGNIQDTIEQMTELIDRTYQAIHVTVAADVELGIQATTEAKE 553 F+VVA EVRKLA QS +A I+ I+++ ID + V +V+ G+ T KE Sbjct: 512 FSVVAEEVRKLAVQSADSAKEIEKLIQEIVAEIDTSLHMFK-EVNQEVQSGLVVTDNTKE 570 Query: 554 AFISIEQSTAKINGQIHDISAITEQMSAGAQEVAASVQEISNISRSTSDAFQNVTAATEQ 613 +F SI T +I G++ +++ EQ+S +Q V+A+V I+++S+ +S + Q++ A+ E+ Sbjct: 571 SFQSIFSMTNEIAGKLQTMNSTVEQLSDRSQHVSAAVSGIADVSKESSASIQDIAASAEE 630 Query: 614 QLASMEEISASSTELSKMAADLQHKIERFKLE 645 QLASMEEIS+S+T L++MA +L+ ++FK+E Sbjct: 631 QLASMEEISSSATTLAQMAEELRDLTKQFKIE 662 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.311 0.125 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 692,555,390 Number of extensions: 24766935 Number of successful extensions: 100422 Number of sequences better than 1.0e-05: 2013 Number of HSP's gapped: 96764 Number of HSP's successfully gapped: 2139 Length of query: 646 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 514 Effective length of database: 398,844,510 Effective search space: 205006078140 Effective search space used: 205006078140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)