BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0052.p (63 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_764348.1| dihydrolipoamide S-acetyltransferase [Staphyloc... 101 5e-21 gb|AAF71761.1| pyruvate dehydrogenase complex subunit E2 [Staphy... 101 6e-21 ref|NP_645795.1| dihydrolipoamide S-acetyltransferase component ... 100 7e-21 ref|NP_371619.1| dihydrolipoamide S-acetyltransferase component ... 100 7e-21 sp|Q59821|ODP2_STAAU Dihydrolipoyllysine-residue acetyltransfera... 100 7e-21 >ref|NP_764348.1| dihydrolipoamide S-acetyltransferase [Staphylococcus epidermidis ATCC 12228] sp|Q8CT13|ODP2_STAEP Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) gb|AAO04390.1| dihydrolipoamide S-acetyltransferase [Staphylococcus epidermidis ATCC 12228] Length = 433 Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 47/62 (75%), Positives = 55/62 (88%) Query: 1 VAILGTGRITEKPVVKNGEIVAAPVMALSLSFDHRIIDGATAQNFMNYIKTLLANPDMLV 60 VAILG GRI +KP+VK+GEIVAAPV+ALSLSFDHR IDGAT QN MN+IK LL NP++L+ Sbjct: 371 VAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLL 430 Query: 61 ME 62 ME Sbjct: 431 ME 432 >gb|AAF71761.1| pyruvate dehydrogenase complex subunit E2 [Staphylococcus epidermidis] Length = 433 Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 47/62 (75%), Positives = 55/62 (88%) Query: 1 VAILGTGRITEKPVVKNGEIVAAPVMALSLSFDHRIIDGATAQNFMNYIKTLLANPDMLV 60 VAILG GRI +KP+VK+GEIVAAPV+ALSLSFDHR IDGAT QN MN+IK LL NP++L+ Sbjct: 371 VAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLL 430 Query: 61 ME 62 ME Sbjct: 431 ME 432 >ref|NP_645795.1| dihydrolipoamide S-acetyltransferase component of pyruvate dehydrogenase complex E2 [Staphylococcus aureus subsp. aureus MW2] sp|Q8NX76|ODP2_STAAW Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) dbj|BAB94843.1| dihydrolipoamide S-acetyltransferase component of pyruvate dehydrogenase complex E2 [Staphylococcus aureus subsp. aureus MW2] Length = 430 Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 47/62 (75%), Positives = 55/62 (88%) Query: 1 VAILGTGRITEKPVVKNGEIVAAPVMALSLSFDHRIIDGATAQNFMNYIKTLLANPDMLV 60 VAILG GRI +KP+VK+GEIVAAPV+ALSLSFDHR IDGAT QN MN+IK LL NP++L+ Sbjct: 368 VAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLL 427 Query: 61 ME 62 ME Sbjct: 428 ME 429 >ref|NP_371619.1| dihydrolipoamide S-acetyltransferase component of pyruvate dehydrogenase complex E2 [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374213.1| dihydrolipoamide S-acetyltransferase component of pyruvate dehydrogenase complex E2 [Staphylococcus aureus subsp. aureus N315] sp|Q99V06|ODP2_STAAM Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) pir||D89879 hypothetical protein pdhC [imported] - Staphylococcus aureus (strain N315) dbj|BAB42191.1| dihydrolipoamide S-acetyltransferase component of pyruvate dehydrogenase complex E2 [Staphylococcus aureus subsp. aureus N315] dbj|BAB57257.1| dihydrolipoamide S-acetyltransferase component of pyruvate dehydrogenase complex E2 [Staphylococcus aureus subsp. aureus Mu50] Length = 430 Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 47/62 (75%), Positives = 55/62 (88%) Query: 1 VAILGTGRITEKPVVKNGEIVAAPVMALSLSFDHRIIDGATAQNFMNYIKTLLANPDMLV 60 VAILG GRI +KP+VK+GEIVAAPV+ALSLSFDHR IDGAT QN MN+IK LL NP++L+ Sbjct: 368 VAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLL 427 Query: 61 ME 62 ME Sbjct: 428 ME 429 >sp|Q59821|ODP2_STAAU Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) pir||S19722 dihydrolipoamide S-acetyltransferase (EC 2.3.1.12) chain E2 - Staphylococcus aureus emb|CAA41339.1| dihydrolipoamide acetyltransferase: subunit E2 [Staphylococcus aureus] Length = 430 Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 47/62 (75%), Positives = 55/62 (88%) Query: 1 VAILGTGRITEKPVVKNGEIVAAPVMALSLSFDHRIIDGATAQNFMNYIKTLLANPDMLV 60 VAILG GRI +KP+VK+GEIVAAPV+ALSLSFDHR IDGAT QN MN+IK LL NP++L+ Sbjct: 368 VAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLL 427 Query: 61 ME 62 ME Sbjct: 428 ME 429 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.137 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 86,994,582 Number of extensions: 2518335 Number of successful extensions: 6882 Number of sequences better than 1.0e-05: 566 Number of HSP's gapped: 6921 Number of HSP's successfully gapped: 566 Length of query: 63 Length of database: 757,237,578 Length adjustment: 35 Effective length of query: 28 Effective length of database: 662,209,113 Effective search space: 18541855164 Effective search space used: 18541855164 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)