BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0042.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAH92323.1| unknown [environmental sequence] 118 2e-25 ref|NP_943487.1| SilR [Klebsiella pneumoniae] >gi|38016816|gb|AA... 116 4e-25 ref|NP_941213.1| probable transcriptional regulatory protein(sil... 115 8e-25 ref|ZP_00052911.1| COG0745: Response regulators consisting of a ... 114 3e-24 gb|AAP42072.1| unknown [Xanthomonas campestris pv. vesicatoria] 113 3e-24 >gb|EAH92323.1| unknown [environmental sequence] Length = 226 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 94/182 (51%), Gaps = 7/182 (3%) Query: 68 LLIADLNHAAAWAGWSLVSDLREQGKRLTVMVLSDGRYXXXXXXXXXXXXNEYMVKPVHT 127 +++ D+N GW ++ LR GK + V++L+ ++Y+VKP Sbjct: 52 IMLPDMN------GWDIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAF 105 Query: 128 GEFKCRVDNLMXXXXXXXXXXXXXKVDGLVLDPTRRLVQRDGNELKMTPKEFDLLYYLAM 187 E RV L+ +V GL +D R V R GN + +T KEF LL + Sbjct: 106 AELLARVKTLLRRGNTMITESQF-RVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIR 164 Query: 188 HLGEVCPREEILKQVWDYHFHPDTNVVDVYIRHIRLKVDKGHKNKLIHTVRGIGYVLRAP 247 H GEV PR I QVWD +F DTN +DV ++ +R K+D ++ KLI TVRG+GY+L P Sbjct: 165 HQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEVP 224 Query: 248 EG 249 + Sbjct: 225 DA 226 >ref|NP_943487.1| SilR [Klebsiella pneumoniae] gb|AAR07837.1| SilR [Klebsiella pneumoniae] Length = 226 Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 87/169 (51%), Gaps = 1/169 (0%) Query: 81 GWSLVSDLREQGKRLTVMVLSDGRYXXXXXXXXXXXXNEYMVKPVHTGEFKCRVDNLMXX 140 GW ++ LR GK + V++L+ ++Y+VKP E RV L+ Sbjct: 59 GWDIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 Query: 141 XXXXXXXXXXXKVDGLVLDPTRRLVQRDGNELKMTPKEFDLLYYLAMHLGEVCPREEILK 200 +V L +D R V R GN + +T KEF LL + H GEV PR I Sbjct: 119 GNTMITESQF-RVADLSMDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIAS 177 Query: 201 QVWDYHFHPDTNVVDVYIRHIRLKVDKGHKNKLIHTVRGIGYVLRAPEG 249 QVWD +F DTN +DV ++ +R K+D + KLI TVRG+GY+L AP+ Sbjct: 178 QVWDMNFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYILEAPDA 226 >ref|NP_941213.1| probable transcriptional regulatory protein(silver resistance) [Serratia marcescens] emb|CAE51669.1| probable transcriptional regulatory protein(silver resistance) [Serratia marcescens] Length = 226 Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 87/169 (51%), Gaps = 1/169 (0%) Query: 81 GWSLVSDLREQGKRLTVMVLSDGRYXXXXXXXXXXXXNEYMVKPVHTGEFKCRVDNLMXX 140 GW ++ LR GK + V++L+ ++Y+VKP E RV L+ Sbjct: 59 GWDIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 Query: 141 XXXXXXXXXXXKVDGLVLDPTRRLVQRDGNELKMTPKEFDLLYYLAMHLGEVCPREEILK 200 KV L +D R V R GN + +T KEF LL + H GEV PR I Sbjct: 119 GNTMITESQF-KVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIAS 177 Query: 201 QVWDYHFHPDTNVVDVYIRHIRLKVDKGHKNKLIHTVRGIGYVLRAPEG 249 QVWD +F DTN +DV ++ +R K+D ++ KLI TVRG+GY+L P+ Sbjct: 178 QVWDMNFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEVPDA 226 >ref|ZP_00052911.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum] Length = 238 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 87/166 (52%), Gaps = 1/166 (0%) Query: 81 GWSLVSDLREQGKRLTVMVLSDGRYXXXXXXXXXXXXNEYMVKPVHTGEFKCRVDNLMXX 140 G S++ LR G V+VLS ++Y+VKP E R++ L Sbjct: 72 GLSIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEAL-SR 130 Query: 141 XXXXXXXXXXXKVDGLVLDPTRRLVQRDGNELKMTPKEFDLLYYLAMHLGEVCPREEILK 200 KV+ L +D R V R G E+ + P+EF LL YL H G+V R +L+ Sbjct: 131 RVSSTQPETRLKVEDLEMDLLARAVTRGGQEIDLQPREFRLLEYLMRHAGQVVTRTMLLE 190 Query: 201 QVWDYHFHPDTNVVDVYIRHIRLKVDKGHKNKLIHTVRGIGYVLRA 246 VW+YHF P TN++DV+I +R KVDK + LIHTVRG GY LRA Sbjct: 191 NVWEYHFDPQTNLIDVHISRLRQKVDKDFELPLIHTVRGAGYTLRA 236 >gb|AAP42072.1| unknown [Xanthomonas campestris pv. vesicatoria] Length = 227 Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 65/168 (38%), Positives = 89/168 (52%), Gaps = 1/168 (0%) Query: 81 GWSLVSDLREQGKRLTVMVLSDGRYXXXXXXXXXXXXNEYMVKPVHTGEFKCRVDNLMXX 140 GW ++ LR++G + V+ L+ ++Y+ KP E RV ++ Sbjct: 59 GWQVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLGKPFSFAELLARV-RIILR 117 Query: 141 XXXXXXXXXXXKVDGLVLDPTRRLVQRDGNELKMTPKEFDLLYYLAMHLGEVCPREEILK 200 KV L LD RR V R+G + +T KEF LL L GEV PR I Sbjct: 118 RGHAGNEGTMLKVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIAS 177 Query: 201 QVWDYHFHPDTNVVDVYIRHIRLKVDKGHKNKLIHTVRGIGYVLRAPE 248 QVWD +F DTNV++V +R +R+K+D+GH KLI TVRG+GYVL PE Sbjct: 178 QVWDMNFDSDTNVIEVAMRRLRVKIDEGHAVKLIQTVRGMGYVLDVPE 225 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 319,538,214 Number of extensions: 10938256 Number of successful extensions: 26188 Number of sequences better than 1.0e-05: 1438 Number of HSP's gapped: 26037 Number of HSP's successfully gapped: 1438 Length of query: 257 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 134 Effective length of database: 423,280,401 Effective search space: 56719573734 Effective search space used: 56719573734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 124 (52.4 bits)