BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0036.p (260 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAB40634.1| ATP-binding protein-homolog [Thermoactinomyces v... 221 1e-56 ref|NP_389417.1| similar to ABC transporter (ATP-binding protein... 212 6e-54 gb|EAF83660.1| unknown [environmental sequence] 211 9e-54 ref|NP_471224.1| similar to ABC transporter (ATP-binding protein... 208 1e-52 ref|NP_465303.1| similar to ABC transporter (ATP-binding protein... 204 1e-51 >dbj|BAB40634.1| ATP-binding protein-homolog [Thermoactinomyces vulgaris] Length = 266 Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 104/254 (40%), Positives = 166/254 (65%), Gaps = 2/254 (0%) Query: 1 MISLQHLTLRREQSLILDDVSLEMKQGENWVILGRNGSGKTTLLEMMTGYLFPSKGSVEV 60 +I + ++ RE +IL ++S +++ GENW ++G NGSGKTTLL ++ GY++P+ G+V++ Sbjct: 2 IIEMNSVSWMREGKMILKNISWQVQPGENWCLIGLNGSGKTTLLNLVNGYIWPTTGTVKL 61 Query: 61 LGYKYGQCDLREVRKEIGYIGPSLMEKLSLTDPVWEVVATGAYAYLRFYQDIPRAVHDQA 120 G K+G+ +LRE+RK+IG++ SL ++L + +V +G +A + Y + ++A Sbjct: 62 FGKKFGEVNLRELRKKIGWVSSSLAQQLHNHETAINIVLSGKFASIGLYDKPEKIDMEKA 121 Query: 121 IRLLEDMNLGELAYHPFGTLSQGERKKAMLARCLMAEPKLLILDEPCAGLDLYEREKMLA 180 LLE M G L + TLSQGE++K ++AR LMA P+L+ILDEPC GLDL+ RE++L Sbjct: 122 AALLEMMGCGHLITQTYQTLSQGEKQKVLIARALMASPQLMILDEPCTGLDLFAREQLLH 181 Query: 181 EIDKLKQRDVS--VVYVTHHVEEIVPLFTHVALIRDGKLAGSGPKEEVLTKEMILATYDI 238 I + S ++YVTHHVEEI FTH L++ G++ +GP VLT+E++ +D Sbjct: 182 SIQSISAHPQSPALIYVTHHVEEITNCFTHTLLLKQGEIFRAGPTSHVLTEELLSDFFDT 241 Query: 239 PADIEWDSGRPWIK 252 P ++E R WI+ Sbjct: 242 PIEVEHRGKRCWIR 255 >ref|NP_389417.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] pir||A69876 ABC transporter (ATP-binding protein) homolog ylmA - Bacillus subtilis emb|CAB13408.1| ylmA [Bacillus subtilis subsp. subtilis str. 168] Length = 264 Score = 212 bits (540), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 104/254 (40%), Positives = 169/254 (66%), Gaps = 3/254 (1%) Query: 1 MISLQHLTLRREQSLILDDVSLEMKQGENWVILGRNGSGKTTLLEMMTGYLFPSKGSVEV 60 ++ L +++L+R IL D+ ++++ ENWV+ G NG+GKT LL M+ Y FP+ G + V Sbjct: 2 ILQLDNVSLKRNGKWILKDIHWKVEEKENWVLYGLNGAGKTALLNMLCSYYFPTSGEMRV 61 Query: 61 LGYKYGQCDLRE-VRKEIGYIGPSLMEKLSLTDPVWEVVATGAYAYLRFYQDIPRAVHDQ 119 LG+++G+ +L E +R++IG + +L +KL D +E+ +GAYA + Y+ + ++ Sbjct: 62 LGHEFGKTELGEKLRRKIGLVSAALQQKLYPADSAFEIALSGAYASIGLYETPSKETREK 121 Query: 120 AIRLLEDMNLGELAYHPFGTLSQGERKKAMLARCLMAEPKLLILDEPCAGLDLYEREKML 179 AI LLED+ E A + TLSQGE+++A++AR LMA+P+LLILDEP GLD REK+L Sbjct: 122 AIGLLEDLGAIEYADRRYETLSQGEKQRALIARALMADPELLILDEPVTGLDFIAREKLL 181 Query: 180 AEIDKL--KQRDVSVVYVTHHVEEIVPLFTHVALIRDGKLAGSGPKEEVLTKEMILATYD 237 I + K+ S++YVTHH EEI+P+F L++ G++ GSG +E+LT +++ A +D Sbjct: 182 DTITYIANKENAPSILYVTHHAEEILPVFDKALLLKQGEVFGSGEIKEMLTDQILSAFFD 241 Query: 238 IPADIEWDSGRPWI 251 P + W+ RP++ Sbjct: 242 TPIHVLWNQDRPFL 255 >gb|EAF83660.1| unknown [environmental sequence] Length = 267 Score = 211 bits (538), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 104/257 (40%), Positives = 158/257 (61%), Gaps = 2/257 (0%) Query: 1 MISLQHLTLRREQSLILDDVSLEMKQGENWVILGRNGSGKTTLLEMMTGYLFPSKGSVEV 60 ++ +Q L L+R + ILD ++ +++GE+W +LG NG GKTTLL +TGY FP++G +++ Sbjct: 5 ILDIQDLHLQRGDTRILDGLNWRIERGEHWAVLGPNGCGKTTLLAALTGYKFPTRGDIQI 64 Query: 61 LGYKYGQCDLREVRKEIGYIGPSLMEKLSLTDPVWEVVATGAYAYLRFYQDIPRAVHDQA 120 LG +G D E+RK IG + +L ++ +PV E + +G YA + + A +A Sbjct: 65 LGNTFGDSDWTELRKHIGLVSSTLNRLMAEDEPVLETIVSGKYAMIDLWHKPSAADQREA 124 Query: 121 IRLLEDMNLGELAYHPFGTLSQGERKKAMLARCLMAEPKLLILDEPCAGLDLYEREKMLA 180 LL+ + LA P+ LSQGER++A++ R LMA PKLL+LDEPCAGLD RE L Sbjct: 125 RALLKRIECAHLADRPWAQLSQGERQRALIGRALMARPKLLMLDEPCAGLDPVAREHFLQ 184 Query: 181 EIDKLKQR--DVSVVYVTHHVEEIVPLFTHVALIRDGKLAGSGPKEEVLTKEMILATYDI 238 ID+L +R ++V +THHVEEI+P+FTH L+R G+ GP + +L + + +D Sbjct: 185 FIDRLGRRRNTPAIVLITHHVEEIMPVFTHALLLRKGRDVAHGPVKRILKNDTLSKAFDC 244 Query: 239 PADIEWDSGRPWIKIRP 255 I GR W+ +P Sbjct: 245 EVAISRKQGRYWLTAQP 261 >ref|NP_471224.1| similar to ABC transporter (ATP-binding protein) [Listeria innocua] pir||AH1668 ABC transporter (ATP-binding protein) homolog lin1890 [imported] - Listeria innocua (strain Clip11262) emb|CAC97120.1| lin1890 [Listeria innocua] Length = 257 Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 102/244 (41%), Positives = 159/244 (65%), Gaps = 2/244 (0%) Query: 1 MISLQHLTLRREQSLILDDVSLEMKQGENWVILGRNGSGKTTLLEMMTGYLFPSKGSVEV 60 M + +H+ L+RE IL D++ + + ENW ILG NGSGKTTLL+++ GYL+PS G ++V Sbjct: 1 MFAFEHVYLKRENKTILSDINWTVNEKENWAILGLNGSGKTTLLQLLNGYLWPSSGKLQV 60 Query: 61 LGYKYGQCDLREVRKEIGYIGPSLMEKLSLTDPVWEVVATGAYAYLRFYQDIPRAVHDQA 120 LG+ +GQ L E+RK IG++ +L +L + ++V +G +A + Y + +QA Sbjct: 61 LGHVFGQTSLPELRKSIGWVSNALDHQLKDYELSEQIVLSGKFASIGMYAKVTDVEVNQA 120 Query: 121 IRLLEDMNLGELAYHPFGTLSQGERKKAMLARCLMAEPKLLILDEPCAGLDLYEREKMLA 180 +LL + L + LSQGER+ ++AR LMA PKLLILDEPC GLDL+ + ++L Sbjct: 121 KKLLTNCGGASLIGKAYKILSQGERQIVLIARALMANPKLLILDEPCNGLDLFAKSRLLE 180 Query: 181 EIDKLKQRDVS--VVYVTHHVEEIVPLFTHVALIRDGKLAGSGPKEEVLTKEMILATYDI 238 I K+ +R S +++VTHH EEI+P F ++ L+RDG++ G E++LT+E++ A Y Sbjct: 181 RIKKIAERPDSPTMLFVTHHTEEILPCFDNIILLRDGEITHHGKTEKLLTEEVLQAFYQK 240 Query: 239 PADI 242 P ++ Sbjct: 241 PVEL 244 >ref|NP_465303.1| similar to ABC transporter (ATP-binding protein) [Listeria monocytogenes EGD-e] pir||AB1297 ABC transporter (ATP-binding protein) homolog lmo1778 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99856.1| lmo1778 [Listeria monocytogenes] Length = 257 Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/244 (40%), Positives = 161/244 (65%), Gaps = 2/244 (0%) Query: 1 MISLQHLTLRREQSLILDDVSLEMKQGENWVILGRNGSGKTTLLEMMTGYLFPSKGSVEV 60 M + +++ L+R+ +IL D++ + ENW ILG NGSGKTTLL+++ GYL+PS G+++V Sbjct: 1 MFAFKNVYLKRDNKMILSDINWVVNDKENWAILGLNGSGKTTLLQLLNGYLWPSSGNLQV 60 Query: 61 LGYKYGQCDLREVRKEIGYIGPSLMEKLSLTDPVWEVVATGAYAYLRFYQDIPRAVHDQA 120 LG+ +G+ L E+RK IG++ +L +L + ++V +G +A + Y+ + A DQA Sbjct: 61 LGHIFGKTSLPELRKSIGWVSNALDHQLKEYELSEQIVLSGKFASIGIYEKVTTAEIDQA 120 Query: 121 IRLLEDMNLGELAYHPFGTLSQGERKKAMLARCLMAEPKLLILDEPCAGLDLYEREKMLA 180 +LL D L P+ LSQGER+ ++AR LMA PKLLILDEPC GLDL+ + ++L Sbjct: 121 KKLLTDCGGITLIGKPYKILSQGERQIVLIARALMASPKLLILDEPCNGLDLFAKNRLLE 180 Query: 181 EIDKLKQ--RDVSVVYVTHHVEEIVPLFTHVALIRDGKLAGSGPKEEVLTKEMILATYDI 238 I K+ + ++++VTHH EEI+P F ++ L+RDG++ G E++LT+E++ Y Sbjct: 181 RIKKIAELPESPTMLFVTHHTEEILPCFDNIILLRDGEITHHGKTEKLLTEEVLQDFYQK 240 Query: 239 PADI 242 P ++ Sbjct: 241 PVEL 244 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 392,829,376 Number of extensions: 15997052 Number of successful extensions: 106737 Number of sequences better than 1.0e-05: 16538 Number of HSP's gapped: 91286 Number of HSP's successfully gapped: 17585 Length of query: 260 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 137 Effective length of database: 423,280,401 Effective search space: 57989414937 Effective search space used: 57989414937 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)