BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0035.p
         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_465947.1| similar to thioredoxin [Listeria monocytogenes ...    62   5e-09
ref|NP_391156.1| similar to thioredoxin [Bacillus subtilis] >gi|...    58   9e-08
ref|NP_834660.1| Thioredoxin [Bacillus cereus ATCC 14579] >gi|29...    54   1e-06
ref|NP_242581.1| thioredoxin [Bacillus halodurans] >gi|25494891|...    54   2e-06
ref|NP_653456.1| thiored, Thioredoxin [Bacillus anthracis A2012]       53   2e-06

>ref|NP_465947.1| similar to thioredoxin [Listeria monocytogenes EGD-e]
 pir||AH1377 thioredoxin homolog lmo2424 [imported] - Listeria monocytogenes
          (strain EGD-e)
 emb|CAD00502.1| lmo2424 [Listeria monocytogenes]
 gb|AAQ18700.1| putative thioredoxin [Listeria monocytogenes]
          Length = 94

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query: 14 ERKGEPLVVFFYTPLCGTCKAARRMLEVAEHLLPKELLIAAGNVNMLPMLVNTYRISSVP 73
          ++KGE  VVFF+TP+CG+C+ A R+++V       +  +A  N+N +P +  +  I+SVP
Sbjct: 5  QKKGEDFVVFFFTPMCGSCQIASRLVDVVIEADGIQTEVAKVNLNYVPDIAQSLEITSVP 64

Query: 74 ALLV----APADRSKAPH 87
          AL+      PAD S   H
Sbjct: 65 ALVKFKNGQPADLSYQLH 82


>ref|NP_391156.1| similar to thioredoxin [Bacillus subtilis]
 pir||F70020 thioredoxin homolog yusE - Bacillus subtilis
 emb|CAB15266.1| yusE [Bacillus subtilis subsp. subtilis str. 168]
          Length = 106

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 1  MKEMNQQELLEALERKGEPLVVFFYTPLCGTCKAARRMLEVAEHLLPKELLIAAGNVNML 60
          MKE+ + EL + +E   +  +++ YTP CGTC+ A +ML V + +LP ++     NVN  
Sbjct: 1  MKELQEHEL-DHIE--DDVYLLYLYTPFCGTCQLASKMLTVVKEMLP-DVAFYQNNVNYS 56

Query: 61 PMLVNTYRISSVPALLVAPADR 82
          P     Y+I SVP  L+    +
Sbjct: 57 PTFAKAYQIESVPCFLLFKGGK 78


>ref|NP_834660.1| Thioredoxin [Bacillus cereus ATCC 14579]
 gb|AAP11861.1| Thioredoxin [Bacillus cereus ATCC 14579]
          Length = 99

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 12 ALERKGEPLVVFFYTPLCGTCKAARRMLEVAEHLLPKELLIAAGNVNMLPMLVNTYRISS 71
          AL    E  V++ YTP+CGTC+ A++ML V E  + ++L I   ++N  P L   Y I S
Sbjct: 11 ALIENEEKTVLYVYTPMCGTCQLAKKMLTVVEMTI-EDLKIGMLDLNYAPHLAKEYGIES 69

Query: 72 VPALLV 77
          VP LLV
Sbjct: 70 VPCLLV 75


>ref|NP_242581.1| thioredoxin [Bacillus halodurans]
 pir||C83864 thioredoxin BH1715 [imported] - Bacillus halodurans (strain
          C-125)
 dbj|BAB05434.1| thioredoxin [Bacillus halodurans]
          Length = 112

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 22 VFFYTPLCGTCKAARRMLEVAEHLLPKELLIAAGNVNMLPMLVNTYRISSVPALLVAPAD 81
          V+F++PLCGTCK A+RM++V E   P    I   N+N    L ++ +++S+P L++   +
Sbjct: 14 VYFHSPLCGTCKVAKRMIKVMEETFP-HFEIREVNINEEIALAHSLKVTSIPCLIIFQEE 72

Query: 82 R 82
          R
Sbjct: 73 R 73


>ref|NP_653456.1| thiored, Thioredoxin [Bacillus anthracis A2012]
          Length = 99

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 12 ALERKGEPLVVFFYTPLCGTCKAARRMLEVAEHLLPKELLIAAGNVNMLPMLVNTYRISS 71
          AL    E  V++ YTP+CGTC+ A++ML V E  + ++L I   ++N  P     Y I S
Sbjct: 11 ALIENEEKTVLYVYTPMCGTCQLAKKMLTVVEMTI-EDLKIGMLDLNYAPHFAKEYGIES 69

Query: 72 VPALLV 77
          VP LLV
Sbjct: 70 VPCLLV 75


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 137,084,990
Number of extensions: 4421259
Number of successful extensions: 12048
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 12065
Number of HSP's successfully gapped: 8
Length of query: 107
Length of database: 757,237,578
Length adjustment: 73
Effective length of query: 34
Effective length of database: 559,035,351
Effective search space: 19007201934
Effective search space used: 19007201934
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)