BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0027.p (176 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833806.1| IG hypothetical 17224 [Bacillus cereus ATCC 145... 67 2e-10 ref|NP_980450.1| conserved hypothetical protein [Bacillus cereus... 66 4e-10 ref|NP_658128.1| hypothetical protein predicted by GeneMark [Bac... 65 7e-10 ref|NP_241544.1| BH0678~unknown conserved protein in B. subtilis... 65 7e-10 ref|NP_693369.1| hypothetical protein OB2448 [Oceanobacillus ihe... 65 9e-10 >ref|NP_833806.1| IG hypothetical 17224 [Bacillus cereus ATCC 14579] gb|AAP11007.1| IG hypothetical 17224 [Bacillus cereus ATCC 14579] Length = 248 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 1/100 (1%) Query: 75 SMEPIKVELSWSPLQVAAGQKVVFEALVTQNGQPVDDAKEVLFEIVSNNNTESKLEFTGE 134 +E +KV + +P ++ G+K +ALVTQ + V DA +V FEI + + + ++ G+ Sbjct: 32 KLEAVKVAVQTNPKEIKPGEKTEVQALVTQGKEKVTDADDVKFEIWKDGDEKHEM-LDGK 90 Query: 135 SSGDGIYKAEGTIDAEGEFTVTSHVTARTQHSMPSKKLVV 174 G G+Y E T + +G + + +H AR H MP K+ V Sbjct: 91 HKGKGVYAVEKTFETDGVYHIIAHTNAREMHVMPEVKVAV 130 >ref|NP_980450.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43058.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 246 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 1/100 (1%) Query: 75 SMEPIKVELSWSPLQVAAGQKVVFEALVTQNGQPVDDAKEVLFEIVSNNNTESKLEFTGE 134 +E +KV + +P ++ G+K +ALVTQ + V DA +V FEI + + ++ G+ Sbjct: 30 KLEAVKVAVQTNPKEIKPGEKTEVQALVTQGKEKVTDADDVKFEIWKAGDEKHEM-LEGK 88 Query: 135 SSGDGIYKAEGTIDAEGEFTVTSHVTARTQHSMPSKKLVV 174 G G+Y E T + +G + + +H AR H MP K+ V Sbjct: 89 HKGKGVYAVEKTFETDGVYHIIAHTNAREMHVMPEVKVAV 128 >ref|NP_658128.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_846543.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28029.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 246 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 1/100 (1%) Query: 75 SMEPIKVELSWSPLQVAAGQKVVFEALVTQNGQPVDDAKEVLFEIVSNNNTESKLEFTGE 134 +E +KV + +P ++ G+K +ALVTQ + V DA +V FE+ + + ++ G+ Sbjct: 30 KLEAVKVAVQTNPKEIKPGEKTEVQALVTQGKEKVTDADDVKFEVWKAGDEKHEM-LEGK 88 Query: 135 SSGDGIYKAEGTIDAEGEFTVTSHVTARTQHSMPSKKLVV 174 G G+Y E T + +G + + +H AR H MP K+ V Sbjct: 89 HKGKGVYAVEKTFETDGVYHIIAHTNAREMHVMPEVKVAV 128 >ref|NP_241544.1| BH0678~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||F83734 hypothetical protein BH0678 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04397.1| BH0678~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 246 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 76 MEPIKVELSWSPLQVAAGQKVVFEALVTQNGQPVDDAKEVLFEIVSNNNTESKLEFTGES 135 + PI+VEL + +A+G+ + F+ LVTQN PV+DA+EV+ E E + Sbjct: 32 LSPIEVELLYEE-ALASGENMTFDVLVTQNEAPVEDAREVIVEFWQEGAKEESDMIESTN 90 Query: 136 SGDGIYKAEGTIDAEGEFTVTSHVTARTQHSMPSKKLVV 174 G G+Y+ +G + V HVTAR H MP +L + Sbjct: 91 EGGGVYRVTYEFPEDGLYFVQPHVTARDMHRMPLYELTI 129 >ref|NP_693369.1| hypothetical protein OB2448 [Oceanobacillus iheyensis HTE831] dbj|BAC14404.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 166 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 57 GCSGGNGDMNHMHAESNMSMEPIKVELSWSPLQVAAGQKVVFEALVTQNGQPVDDAKEVL 116 CS D N + + ++ +KV+ P V G+ + A VT PV+DA EV+ Sbjct: 18 ACSQNEEDTNGNNENLDDVVKELKVDFD-IPEHVETGETIDLTAHVTYGDAPVEDADEVI 76 Query: 117 FEIVSNNNTESKLEFTGESSGDGIYKAEGTIDAEGEFTVTSHVTARTQHSMPSKKLVV 174 FE+ + N++ +E G+ +G Y A T + E + + +H TA HSMP K ++V Sbjct: 77 FEVWTQGNSDQSVELEGKHQENGTYTASYTFEEEKVYEMYAHTTAEAIHSMPFKTVIV 134 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.312 0.128 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 229,196,963 Number of extensions: 7957847 Number of successful extensions: 14975 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 14971 Number of HSP's successfully gapped: 6 Length of query: 176 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 59 Effective length of database: 439,570,995 Effective search space: 25934688705 Effective search space used: 25934688705 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 121 (51.2 bits)