BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0022.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243222.1| transcriptional repressor of the SOS regulon [B... 290 1e-77 ref|NP_389668.1| transcriptional regulator [Bacillus subtilis] >... 290 1e-77 ref|NP_470676.1| highly similar to SOS response regulator lexA, ... 283 1e-75 ref|NP_464827.1| highly similar to SOS response regulator lexA, ... 278 6e-74 ref|NP_833418.1| LexA repressor [Bacillus cereus ATCC 14579] >gi... 278 7e-74 >ref|NP_243222.1| transcriptional repressor of the SOS regulon [Bacillus halodurans] sp|Q9KAD3|LEXA_BACHD LexA repressor pir||D83944 SOS regulon transcription repressor lexA [imported] - Bacillus halodurans (strain C-125) dbj|BAB06075.1| transcriptional repressor of the SOS regulon [Bacillus halodurans] Length = 207 Score = 290 bits (743), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 144/210 (68%), Positives = 168/210 (80%), Gaps = 5/210 (2%) Query: 6 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 65 MSK+S RQ IL++I+ EVR+KGYPPSVREIGEAVGLASSSTVHGHL RLEKKG IRRDP Sbjct: 1 MSKLSRRQQEILDYIKEEVRAKGYPPSVREIGEAVGLASSSTVHGHLSRLEKKGYIRRDP 60 Query: 66 TKPRAIELLGQED--SENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYVGD 123 TKPRAIE+L E+ SE T IPVVGKVTAG+PITA EN+E+YFPLP + Sbjct: 61 TKPRAIEVLDLENLASETTEA---KATYIPVVGKVTAGLPITAVENVEEYFPLPEQLTAN 117 Query: 124 NKVFMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIR 183 + + L + GDSMI+AGI +GD VIVRQQQTADNGDI+VAMTEEDEATVK F++E+D+IR Sbjct: 118 DNTYALRIQGDSMIEAGIFDGDLVIVRQQQTADNGDIIVAMTEEDEATVKRFFREKDYIR 177 Query: 184 LQPENPAYEPLRLNRVTILGRVIGLFRDIH 213 LQPEN EP+ L TILG+VIG+FR IH Sbjct: 178 LQPENSTMEPIILTTCTILGKVIGVFRTIH 207 >ref|NP_389668.1| transcriptional regulator [Bacillus subtilis] sp|P31080|LEXA_BACSU LexA repressor (SOS regulatory protein dinR) pir||A41315 transcription repressor of SOS regulon lexA/dinR - Bacillus subtilis gb|AAA22573.1| lexA emb|CAB13669.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 205 Score = 290 bits (743), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 147/209 (70%), Positives = 169/209 (80%), Gaps = 5/209 (2%) Query: 6 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 65 M+K+S RQL IL FI+ EV+SKGYPPSVREIGEAVGLASSSTVHGHL RLE KGLIRRDP Sbjct: 1 MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDP 60 Query: 66 TKPRAIELLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYVG-DN 124 TKPRAIE+L +E Q V +PV+GKVTAG PITA ENIE+YFPLP V D Sbjct: 61 TKPRAIEILDEEVDIPQSQVVN----VPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDE 116 Query: 125 KVFMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRL 184 VFML ++GDSMIDAGI++ DYVIV+QQ TA+NG+IVVAMTE+DEATVK FYKE HIRL Sbjct: 117 HVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDDEATVKRFYKEDTHIRL 176 Query: 185 QPENPAYEPLRLNRVTILGRVIGLFRDIH 213 QPENP EP+ L V+ILG+VIG+FR +H Sbjct: 177 QPENPTMEPIILQNVSILGKVIGVFRTVH 205 >ref|NP_470676.1| highly similar to SOS response regulator lexA, transcription repressor protein [Listeria innocua] sp|Q92C51|LEXA_LISIN LexA repressor pir||AC1600 SOS response regulator lexA, transcription repressor protein homolog lin1340 [imported] - Listeria innocua (strain Clip11262) emb|CAC96571.1| lin1340 [Listeria innocua] Length = 204 Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 143/207 (69%), Positives = 166/207 (80%), Gaps = 5/207 (2%) Query: 8 KISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDPTK 67 KIS RQ I EFI++EV+ KGYPPSVREIGEAVGLASSSTVHGHL RLE KGLIRRDPTK Sbjct: 2 KISKRQQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTK 61 Query: 68 PRAIELLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYV-GDNKV 126 PRAIE+L ED V IP++GKVTAG+PITA ENIE+YFPLP + G+ V Sbjct: 62 PRAIEILSLEDEAET----PNVVNIPIIGKVTAGMPITAIENIEEYFPLPEYMAAGETNV 117 Query: 127 FMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRLQP 186 FML + G+SMI+AGI++GD VIVRQQ +A NG+IVVAMT+E+EAT K FYKE +H RLQP Sbjct: 118 FMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENEATCKRFYKEANHFRLQP 177 Query: 187 ENPAYEPLRLNRVTILGRVIGLFRDIH 213 EN A EP+ LN VTILG+VIGL+RDIH Sbjct: 178 ENDALEPIILNNVTILGKVIGLYRDIH 204 >ref|NP_464827.1| highly similar to SOS response regulator lexA, transcription repressor protein [Listeria monocytogenes EGD-e] sp|Q8Y7H7|LEXA_LISMO LexA repressor pir||AF1237 SOS response regulator lexA, transcription repressor protein homolog lmo1302 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99380.1| lmo1302 [Listeria monocytogenes] Length = 204 Score = 278 bits (711), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 140/206 (67%), Positives = 165/206 (80%), Gaps = 5/206 (2%) Query: 8 KISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDPTK 67 KIS RQ I EFI++EV+ KGYPPSVREIGEAVGLASSSTVHGHL RLE KGLIRRDPTK Sbjct: 2 KISKRQQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHGHLARLEGKGLIRRDPTK 61 Query: 68 PRAIELLGQEDSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYV-GDNKV 126 PRAIE+L ED V IP++GKVTAG+PITA ENI++YFPLP + G+ V Sbjct: 62 PRAIEILSLEDEAET----PNVVNIPIIGKVTAGMPITAIENIDEYFPLPEYMAAGETNV 117 Query: 127 FMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHIRLQP 186 FML + G+SMI+AGI++GD VIVRQ+ +A NG+IVVAMT+E+EAT K FYKE +H RLQP Sbjct: 118 FMLEIDGESMINAGILDGDKVIVRQESSAINGEIVVAMTDENEATCKRFYKEANHFRLQP 177 Query: 187 ENPAYEPLRLNRVTILGRVIGLFRDI 212 EN A EP+ LN VTILG+VIGL+RDI Sbjct: 178 ENDALEPILLNNVTILGKVIGLYRDI 203 >ref|NP_833418.1| LexA repressor [Bacillus cereus ATCC 14579] sp|Q81A92|LEXA_BACCR LexA repressor gb|AAP10619.1| LexA repressor [Bacillus cereus ATCC 14579] Length = 210 Score = 278 bits (710), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 134/211 (63%), Positives = 177/211 (83%), Gaps = 8/211 (3%) Query: 6 MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVHGHLDRLEKKGLIRRDP 65 M K++ RQ IL+FI+ +V+ KGYPPSVREIG+AVGLASSSTVHGHL RLE+KG IRRDP Sbjct: 5 MEKLTKRQQDILDFIKLKVQEKGYPPSVREIGQAVGLASSSTVHGHLSRLEEKGYIRRDP 64 Query: 66 TKPRAIELLGQE--DSENVHQFVQTVTRIPVVGKVTAGVPITATENIEDYFPLPTHYV-G 122 TKPRAIE+LG++ D+E Q+V ++P+VGKVTAG+PITA E++E++FPLP V G Sbjct: 65 TKPRAIEILGEDRMDTET-----QSVIQVPIVGKVTAGLPITAVESVEEHFPLPASIVAG 119 Query: 123 DNKVFMLSVLGDSMIDAGIMNGDYVIVRQQQTADNGDIVVAMTEEDEATVKTFYKERDHI 182 ++VFML + GDSMI+AGI +GD V+VRQQQ+A NG+IVVA+TE++EATVK FYKE+DH Sbjct: 120 ADQVFMLRISGDSMIEAGIFDGDLVVVRQQQSAYNGEIVVALTEDNEATVKRFYKEKDHF 179 Query: 183 RLQPENPAYEPLRLNRVTILGRVIGLFRDIH 213 RLQPEN + EP+ L +V+++G+VIG++RD+H Sbjct: 180 RLQPENSSLEPIILKQVSVIGKVIGVYRDLH 210 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 310,292,418 Number of extensions: 12473658 Number of successful extensions: 35176 Number of sequences better than 1.0e-05: 607 Number of HSP's gapped: 34743 Number of HSP's successfully gapped: 612 Length of query: 213 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 93 Effective length of database: 431,425,698 Effective search space: 40122589914 Effective search space used: 40122589914 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)