BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0012.p (429 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_622758.1| GTPases [Thermoanaerobacter tengcongensis] >gi|... 339 7e-92 ref|ZP_00182215.1| hypothetical protein Exigu247701 [Exiguobacte... 329 9e-89 ref|ZP_00060545.1| COG2262: GTPases [Clostridium thermocellum AT... 321 2e-86 ref|ZP_00058272.1| COG2262: GTPases [Thermobifida fusca] 312 9e-84 ref|NP_980031.1| GTP-binding protein [Bacillus cereus ATCC 10987... 311 2e-83 >ref|NP_622758.1| GTPases [Thermoanaerobacter tengcongensis] gb|AAM24362.1| GTPases [Thermoanaerobacter tengcongensis] Length = 428 Score = 339 bits (870), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 190/395 (48%), Positives = 274/395 (69%), Gaps = 14/395 (3%) Query: 13 QDRAILVSLVTDKIKRTGVDPELSLQELVQLAETAGVIVLDVLRQNKETPDSKWFIGKGK 72 ++RAILV++++ + E +L EL +LA TAG V+ +L Q K+ + +IGKGK Sbjct: 25 KERAILVAIISSP------EDEETLNELKELAVTAGAEVIGILTQKKKGINKAHYIGKGK 78 Query: 73 VEELRMAADGLGANTAIFDQELSGAQVRNLEEALDLKIIDRTQLILDIFAGRAKTREGII 132 +EEL+M + A+ I + EL+G Q++NLE+AL +KI+DRT LILDIFA RA+++EG++ Sbjct: 79 LEELKMFVENQQADLVIVNDELTGTQIKNLEDALGVKIVDRTNLILDIFAKRARSKEGML 138 Query: 133 QVELAQLSYLLPRLSGHGKNLSRLXXXXXXXXXXESKLETDRRHIRDRISELKRQLDEVV 192 QVELAQL Y LPRL G G LSRL E+KLE DRRHIR+RI ++ +L+E+ Sbjct: 139 QVELAQLKYRLPRLVGLGGQLSRLGGGIGTRGPGETKLEVDRRHIRNRIKAIEEKLEELE 198 Query: 193 KTRELHRERRRKSGAVQVALVGYTNAGKSTLLKQLTDADVYIENQLFATLDPTSRVLQLP 252 K R L R+RR+K+ VA+VGYTNAGKSTLL LT AD Y+E++LFATLDPT+R L LP Sbjct: 199 KHRNLQRQRRKKNQIPVVAIVGYTNAGKSTLLNALTGADAYVEDKLFATLDPTARKLVLP 258 Query: 253 AGKEVVLTDTVGFIQNLPHDLVASFRATLEEVNEANLVLHVVDASSPMREEQMEVVQSIL 312 +G+EV+LTDTVGFI+ LPHDLV +F++TLEEV A+L+LHV+D +SP +E+++VV+ +L Sbjct: 259 SGREVILTDTVGFIRKLPHDLVEAFKSTLEEVKYADLLLHVIDVTSPDMDEKIKVVEKVL 318 Query: 313 QDLGAAGKPQIVLFNKSDICRPEQLQMLPSGPGF-LKISAFNPDDLTRITEMIADELAGD 371 DLGA P+I ++NK D+ L+++PSG + ISA N L R+ E I EL + Sbjct: 319 SDLGAIETPRINVYNKIDL-----LEIVPSGNNRDIYISAKNKIGLDRLLEAIERELFKE 373 Query: 372 T--LTFRIPGDRGDLSSLLYRVGEVLEQNVEDNDV 404 T ++F P ++ + L G+V+E++ ++ + Sbjct: 374 TEVVSFLFPYEKTREYNYLKERGKVIEEDFDEKGI 408 >ref|ZP_00182215.1| hypothetical protein Exigu247701 [Exiguobacterium sp. 255-15] Length = 413 Score = 329 bits (843), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 184/351 (52%), Positives = 241/351 (68%), Gaps = 12/351 (3%) Query: 34 ELSLQELVQLAETAGVIVLDVLRQNKETPDSKWFIGKGKVEELRMAADGLGANTAIFDQE 93 E S+ EL L TA +V+ L Q +++ D + FIGKGKVEEL A L + IF+ E Sbjct: 21 EESVAELEALVTTAHAVVVGRLDQKRQSIDRRTFIGKGKVEELVALAQELEPDLIIFNAE 80 Query: 94 LSGAQVRNLEEALD----LKIIDRTQLILDIFAGRAKTREGIIQVELAQLSYLLPRLSGH 149 ++ Q++N+ AL+ +K+IDRTQLILDIFAGRA++REG +QVELAQ+SYLLPRLSG Sbjct: 81 VTPGQMKNIRIALEDPESIKLIDRTQLILDIFAGRAQSREGKLQVELAQMSYLLPRLSGQ 140 Query: 150 GKNLSRLXXXXXXXXXXESKLETDRRHIRDRISELKRQLDEVVKTRELHRERRRKSGAVQ 209 G LSRL ESKLETDRRHIR R+ E+K+QL+ V R +RERR+++ Q Sbjct: 141 GTQLSRLGGGIGTRGPGESKLETDRRHIRRRVDEIKKQLETSVAHRARYRERRKENQTFQ 200 Query: 210 VALVGYTNAGKSTLLKQLTDADVYIENQLFATLDPTSRVLQLPAGKEVVLTDTVGFIQNL 269 +ALVGYTNAGKST+ +LT+AD Y +N+LFATLDP +R L LP G +++LTDTVGFIQ+L Sbjct: 201 IALVGYTNAGKSTIFNRLTNADTYEKNELFATLDPLTRQLDLPEGGQILLTDTVGFIQDL 260 Query: 270 PHDLVASFRATLEEVNEANLVLHVVDASSPMREEQMEVVQSILQDLGAAGKPQIVLFNKS 329 P L+A+FR+TLEEV EA+L+LHV+DASS QM+ +L +LGA PQ+ +FNK Sbjct: 261 PTKLIAAFRSTLEEVLEADLILHVIDASSEHYLNQMQTTNDVLDELGAGDIPQLEVFNKK 320 Query: 330 DICRPEQLQMLPSGPGFLKISAFNPDDLTRITEMIADELAG--DTLTFRIP 378 D QL L SG G L ISA +P D+ R+T I ++ + L RIP Sbjct: 321 D-----QLTHLFSG-GKLLISALDPADIDRLTVEIEKAISDILEYLEIRIP 365 >ref|ZP_00060545.1| COG2262: GTPases [Clostridium thermocellum ATCC 27405] Length = 582 Score = 321 bits (822), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 189/402 (47%), Positives = 256/402 (63%), Gaps = 8/402 (1%) Query: 2 AITTHDTETEIQDRAILVSLVTDKIKRTG--VDPELSLQELVQLAETAGVIVLDVLRQNK 59 + H E++ ++RA+LV L T G + E SL EL +LA TAG +VL+ + Q + Sbjct: 152 STVVHLNESD-EERAVLVGLETSSKVIVGGKSEGERSLDELEELARTAGAVVLEKIIQRR 210 Query: 60 ETPDSKWFIGKGKVEELRMAADGLGANTAIFDQELSGAQVRNLEEALDLKIIDRTQLILD 119 D +FIG+GKVEEL + L AN IFD ELSG Q+RN+EE +K++DRT LILD Sbjct: 211 PAKDPAFFIGRGKVEELSLICQALDANLIIFDDELSGVQMRNIEEMTGVKVVDRTTLILD 270 Query: 120 IFAGRAKTREGIIQVELAQLSYLLPRLSGHGKNLSRLXXXXXXXXXXESKLETDRRHIRD 179 IFA RA++REG +QVELAQL Y + RL G G LSRL E KLE DRRHI+ Sbjct: 271 IFAKRARSREGKLQVELAQLKYRVSRLVGLGTQLSRLGGGIGTRGPGEKKLEVDRRHIKR 330 Query: 180 RISELKRQLDEVVKTRELHRERRRKSGAVQVALVGYTNAGKSTLLKQLTDADVYIENQLF 239 RIS L+ QL +V K R RE R ++ +ALVGYTNAGKSTL+ +L +++V E++LF Sbjct: 331 RISFLEAQLKDVEKRRNSFRESRTRNAIPTIALVGYTNAGKSTLMNRLCESNVLAEDKLF 390 Query: 240 ATLDPTSRVLQLPAGKEVVLTDTVGFIQNLPHDLVASFRATLEEVNEANLVLHVVDASSP 299 ATLDPT+R +L G+E +L DTVGFI+ LPH+LV +F++TLEE A++++HVVDAS+ Sbjct: 391 ATLDPTTRSFRLSDGREALLIDTVGFIRKLPHELVEAFKSTLEEAVYADMLIHVVDASNE 450 Query: 300 MREEQMEVVQSILQDLGAAGKPQIVLFNKSDICRPEQLQMLPSGPG--FLKISAFNPDDL 357 EEQ++VV IL+ LGAA KP I+ NK D+ + L++ S P +ISA + Sbjct: 451 EAEEQVKVVNDILESLGAANKPVIMALNKMDMVKG-GLRLAISNPNGRIFEISAVTGQGI 509 Query: 358 TRITEMIADELAGDTLTFR--IPGDRGDLSSLLYRVGEVLEQ 397 + E I + L D R IP G + S +Y+ G +LEQ Sbjct: 510 DAMLEGIREMLPEDEKEVRLFIPYSDGWVISYIYQNGRILEQ 551 >ref|ZP_00058272.1| COG2262: GTPases [Thermobifida fusca] Length = 493 Score = 312 bits (800), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 184/417 (44%), Positives = 261/417 (62%), Gaps = 19/417 (4%) Query: 6 HD-TETEIQ----DRAILVSLVTDKIKRTGVDPELSLQELVQLAETAGVIVLDVLRQNKE 60 HD TE E + +R +L+ + T + D + SL EL QLAETAG +VL L Q + Sbjct: 61 HDITEVEYRSLRLERVVLIGVWTSGTQE---DADNSLFELKQLAETAGAVVLAGLTQRRS 117 Query: 61 TPDSKWFIGKGKVEELRMAADGLGANTAIFDQELSGAQVRNLEEALDLKIIDRTQLILDI 120 PD +IG GK ELR + GA+T I D EL+ Q+R LEEA+ +K+IDRT LILDI Sbjct: 118 KPDPATYIGSGKAAELRDIVEATGADTVICDGELTPGQLRQLEEAVKVKVIDRTALILDI 177 Query: 121 FAGRAKTREGIIQVELAQLSYLLPRLSGHGKNLSR-------LXXXXXXXXXXESKLETD 173 FA A++REG QVELAQL+YLLPRL G G+ LSR E+KLETD Sbjct: 178 FAQHARSREGKAQVELAQLTYLLPRLRGWGEALSRQTGTSGGGNGGVGLRGPGETKLETD 237 Query: 174 RRHIRDRISELKRQLDEVVKTRELHRERRRKSGAVQVALVGYTNAGKSTLLKQLTDADVY 233 RR I R+++L+R+L + RE+ R+RRR VA+ GYTNAGKS+LL ++T A V Sbjct: 238 RRRIHRRMAKLRRELAHMAVAREVKRDRRRSRKVPAVAIAGYTNAGKSSLLNRITGAGVL 297 Query: 234 IENQLFATLDPTSRVLQLPAGKEVVLTDTVGFIQNLPHDLVASFRATLEEVNEANLVLHV 293 +E+ LFATLDPT R + P G+ L+DTVGF+++LPH LV +FR+TLEEV EA+L+LHV Sbjct: 298 VEDALFATLDPTVRRARTPDGRLFTLSDTVGFVRHLPHQLVEAFRSTLEEVTEADLILHV 357 Query: 294 VDASSPMREEQMEVVQSILQDLGAAGKPQIVLFNKSDICRPEQLQMLPSG-PGFLKISAF 352 VD S P E+Q+ V+ + ++ A P++++ NK D QL+ L + PG +++SA Sbjct: 358 VDGSHPDPEQQIASVRQVFAEIDATDIPELIVINKIDAADETQLRQLRTKYPGMVEVSAR 417 Query: 353 NPDDLTRITEMIADEL--AGDTLTFRIPGDRGDLSSLLYRVGEVL-EQNVEDNDVLY 406 + + + + IA+ L + +T +P +RGDL S +++ G +L E++ VL+ Sbjct: 418 TGEGIGELLQAIAEALPESEHEVTVLLPYERGDLVSRIHQEGRILSEEHTASGTVLH 474 >ref|NP_980031.1| GTP-binding protein [Bacillus cereus ATCC 10987] gb|AAS42639.1| GTP-binding protein [Bacillus cereus ATCC 10987] Length = 424 Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 171/351 (48%), Positives = 228/351 (64%), Gaps = 8/351 (2%) Query: 36 SLQELVQLAETAGVIVLDVLRQNKETPDSKWFIGKGKVEELRMAADGLGANTAIFDQELS 95 S++EL LA+TA +L Q + +IGKGK+EEL M + L + +F+ EL+ Sbjct: 25 SMKELASLAKTARAELLVSTTQKRPKFHPATYIGKGKLEELTMLTEELEPDVIVFNNELT 84 Query: 96 GAQVRNLEEALDLKIIDRTQLILDIFAGRAKTREGIIQVELAQLSYLLPRLSGHGKNLSR 155 +Q+RNL LD ++IDRTQLILDIFA RAK+REG +QVELAQL Y +PRL G G +LSR Sbjct: 85 PSQIRNLSSVLDARVIDRTQLILDIFAQRAKSREGKLQVELAQLQYTMPRLMGQGLSLSR 144 Query: 156 LXXXXXXXXXXESKLETDRRHIRDRISELKRQLDEVVKTRELHRERRRKSGAVQVALVGY 215 L E+KLETDRRHIR RI E+K+QL VV+ R+ +RERR+ + QV+L+GY Sbjct: 145 LGGGIGTRGPGETKLETDRRHIRSRIDEIKKQLAVVVEHRKRYRERRKDNKVFQVSLIGY 204 Query: 216 TNAGKSTLLKQLTDADVYIENQLFATLDPTSRVLQLPAGKEVVLTDTVGFIQNLPHDLVA 275 TNAGKSTL +LT+AD + EN LFATLDPT+R + LP+G V+LTDTVGFIQ+LP L+A Sbjct: 205 TNAGKSTLFNRLTEADTFEENLLFATLDPTTRKMPLPSGYTVLLTDTVGFIQDLPTSLIA 264 Query: 276 SFRATLEEVNEANLVLHVVDASSPMREEQMEVVQSILQDLGAAGKPQIVLFNKSDICRPE 335 +FR+TLEE EA+++LHVVD++ P + V+ +L +L P I L+NK D E Sbjct: 265 AFRSTLEEAGEADVILHVVDSADPNYVGHEKTVKQLLSELEINHTPIITLYNKKD----E 320 Query: 336 QLQMLPSGPG--FLKISAFNPDDLTRITEMIADELAGDTLTF--RIPGDRG 382 Q P FL SAF +DL I E I ++ + + +IP G Sbjct: 321 LHQNFIPFPKSDFLMTSAFEENDLLHIKEAIETKMKEEMNCYQVKIPPSEG 371 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.135 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 562,908,811 Number of extensions: 22258938 Number of successful extensions: 93603 Number of sequences better than 1.0e-05: 677 Number of HSP's gapped: 93843 Number of HSP's successfully gapped: 677 Length of query: 429 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 301 Effective length of database: 409,704,906 Effective search space: 123321176706 Effective search space used: 123321176706 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)