BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0476.0010.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||S16301 spore formation protein spoVK - Bacillus subtilis >g... 169 3e-41 ref|NP_389624.1| alternate gene name: spoVJ~disruption leads to ... 168 7e-41 ref|NP_980034.1| stage V sporulation protein K [Bacillus cereus ... 165 7e-40 ref|NP_846090.1| stage V sporulation protein K [Bacillus anthrac... 165 7e-40 ref|NP_657672.1| AAA, ATPase family associated with various cell... 164 9e-40 >pir||S16301 spore formation protein spoVK - Bacillus subtilis emb|CAA42049.1| spoVJ [Bacillus subtilis] Length = 322 Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 87/154 (56%), Positives = 106/154 (68%), Gaps = 1/154 (0%) Query: 22 QINIVLRNQDTPXXXXXXXXXXXXXXPPKNNGHSEWFQELNRELDALVGLENIKELVFEI 81 QINI+L Q KN +E+ +E+ ALVG+E +K + EI Sbjct: 13 QINIILNGQ-KQVLTNAEAEAEYQAALQKNEAKHGILKEIEKEMSALVGMEEMKRNIKEI 71 Query: 82 YALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGKTTVARIVAKLFQRMGVLTKGHLIEVE 141 YA + + + R++ GL G QA HM+FKGNPGTGKTTVAR++ KLF M VL+KGHLIE E Sbjct: 72 YAWIFVNQKRAEQGLKVGKQALHMMFKGNPGTGKTTVARLIGKLFFEMNVLSKGHLIEAE 131 Query: 142 RADLVGEYIGHTAQKTRDLVKKALGGILFIDEAY 175 RADLVGEYIGHTAQKTRDL+KK+LGGILFIDEAY Sbjct: 132 RADLVGEYIGHTAQKTRDLIKKSLGGILFIDEAY 165 >ref|NP_389624.1| alternate gene name: spoVJ~disruption leads to the production of immature spores (stage V sporulation) [Bacillus subtilis] sp|P27643|SP5K_BACSU Stage V sporulation protein K gb|AAB41076.1| SpoVK; SpoVJ [Bacillus subtilis] emb|CAB13626.1| spoVK [Bacillus subtilis subsp. subtilis str. 168] Length = 322 Score = 168 bits (426), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 86/154 (55%), Positives = 105/154 (68%), Gaps = 1/154 (0%) Query: 22 QINIVLRNQDTPXXXXXXXXXXXXXXPPKNNGHSEWFQELNRELDALVGLENIKELVFEI 81 QINI+L Q KN +E+ +E+ ALVG+E +K + EI Sbjct: 13 QINIILNGQ-KQVLTNAEAEAEYQATLQKNEAKHGILKEIEKEMSALVGMEEMKRNIKEI 71 Query: 82 YALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGKTTVARIVAKLFQRMGVLTKGHLIEVE 141 YA + + + R++ GL G QA HM+FKGNPGTGKTTVAR++ KLF M VL+KGHLIE E Sbjct: 72 YAWIFVNQKRAEQGLKVGKQALHMMFKGNPGTGKTTVARLIGKLFFEMNVLSKGHLIEAE 131 Query: 142 RADLVGEYIGHTAQKTRDLVKKALGGILFIDEAY 175 RADLVGEYIGHTAQKTRDL+KK+LGGI FIDEAY Sbjct: 132 RADLVGEYIGHTAQKTRDLIKKSLGGIWFIDEAY 165 >ref|NP_980034.1| stage V sporulation protein K [Bacillus cereus ATCC 10987] gb|AAS42642.1| stage V sporulation protein K [Bacillus cereus ATCC 10987] Length = 318 Score = 165 bits (417), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 76/120 (63%), Positives = 95/120 (79%) Query: 56 EWFQELNRELDALVGLENIKELVFEIYALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGK 115 E Q + E+ LVG+++IK+++ EIYA + + K R + GL S Q HM+FKGNPGTGK Sbjct: 43 EMLQRIEEEMGKLVGMDDIKKIIKEIYAWIYVNKKRQEIGLKSEKQVLHMLFKGNPGTGK 102 Query: 116 TTVARIVAKLFQRMGVLTKGHLIEVERADLVGEYIGHTAQKTRDLVKKALGGILFIDEAY 175 TTVAR++ KL M +L+KGHL+E ERADLVGEYIGHTAQKTRDL+KKA+GGILFIDEAY Sbjct: 103 TTVARMIGKLLFEMNILSKGHLVEAERADLVGEYIGHTAQKTRDLIKKAMGGILFIDEAY 162 >ref|NP_846090.1| stage V sporulation protein K [Bacillus anthracis str. Ames] gb|AAP27576.1| stage V sporulation protein K [Bacillus anthracis str. Ames] Length = 318 Score = 165 bits (417), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 76/120 (63%), Positives = 95/120 (79%) Query: 56 EWFQELNRELDALVGLENIKELVFEIYALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGK 115 E Q + E+ LVG+++IK+++ EIYA + + K R + GL S Q HM+FKGNPGTGK Sbjct: 43 EMLQRIEEEMGKLVGMDDIKKIIKEIYAWIYVNKKRQEIGLKSEKQVLHMLFKGNPGTGK 102 Query: 116 TTVARIVAKLFQRMGVLTKGHLIEVERADLVGEYIGHTAQKTRDLVKKALGGILFIDEAY 175 TTVAR++ KL M +L+KGHL+E ERADLVGEYIGHTAQKTRDL+KKA+GGILFIDEAY Sbjct: 103 TTVARMIGKLLFEMNILSKGHLVEAERADLVGEYIGHTAQKTRDLIKKAMGGILFIDEAY 162 >ref|NP_657672.1| AAA, ATPase family associated with various cellular activities (AAA) [Bacillus anthracis A2012] Length = 318 Score = 164 bits (416), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 76/120 (63%), Positives = 95/120 (79%) Query: 56 EWFQELNRELDALVGLENIKELVFEIYALLQIAKMRSDAGLASGGQAYHMVFKGNPGTGK 115 E Q + E+ LVG+++IK+++ EIYA + + K R + GL S Q HM+FKGNPGTGK Sbjct: 43 EMLQRIEEEMGKLVGMDDIKKIIKEIYAWIYVNKKRQEIGLKSEKQVLHMLFKGNPGTGK 102 Query: 116 TTVARIVAKLFQRMGVLTKGHLIEVERADLVGEYIGHTAQKTRDLVKKALGGILFIDEAY 175 TTVAR++ KL M +L+KGHL+E ERADLVGEYIGHTAQKTRDL+KKA+GGILFIDEAY Sbjct: 103 TTVARMIGKLLFEMNILSKGHLVEAERADLVGEYIGHTAQKTRDLIKKAMGGILFIDEAY 162 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 277,143,601 Number of extensions: 10175197 Number of successful extensions: 48275 Number of sequences better than 1.0e-05: 100 Number of HSP's gapped: 48455 Number of HSP's successfully gapped: 121 Length of query: 211 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 91 Effective length of database: 431,425,698 Effective search space: 39259738518 Effective search space used: 39259738518 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)