BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0476.0009.p
         (177 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB61133.1| GdmH [Staphylococcus gallinarum]                        82   8e-15
ref|NP_623732.1| conserved hypothetical protein [Thermoanaerobac...    76   3e-13
gb|AAB61159.1| putative membrane protein [Staphylococcus epiderm...    75   5e-13
ref|NP_561725.1| hypothetical protein [Clostridium perfringens] ...    74   1e-12
ref|NP_782538.1| membrane associated protein [Clostridium tetani...    74   1e-12

>gb|AAB61133.1| GdmH [Staphylococcus gallinarum]
          Length = 330

 Score = 81.6 bits (200), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 63/85 (74%), Gaps = 5/85 (5%)

Query: 58  RFIVSGGLDRVDYKYTEAEGMKNYLVEQGVPENAIILEDKSTSTYENLRFSQKLMKSKDL 117
           +F++SGG  + D + +EA+ MKNYL+ QGV EN II E+KS STYENL+FS+KL+K    
Sbjct: 198 KFLLSGGQGK-DERISEAQAMKNYLISQGVNENKIICENKSQSTYENLQFSKKLIKK--- 253

Query: 118 NTAVII-THTFHGQRALEIARELNY 141
           NT ++I ++ FH  RA+ IA++L Y
Sbjct: 254 NTNILICSNNFHILRAVFIAKKLKY 278


>ref|NP_623732.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis]
 gb|AAM25336.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis]
          Length = 192

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 8/122 (6%)

Query: 21  GCGHYSWYGDVGRQAQPRTTXXXLDYGLELYREGKFPRFIVSGGLDRVDYKYTEAEGMKN 80
           GC   + YGD    A        L+  L+LY+EG + R+I+  G        +EAE  K 
Sbjct: 45  GC---AVYGD----APSPFFKERLEEALKLYKEG-YGRYIIISGGKGPGESISEAEAGKR 96

Query: 81  YLVEQGVPENAIILEDKSTSTYENLRFSQKLMKSKDLNTAVIITHTFHGQRALEIARELN 140
           Y +E+GV    I+L++KS STYENL FS+++M+   L TA+I+++ FH +RA  IA+ + 
Sbjct: 97  YFLEKGVASKNILLDNKSFSTYENLLFSKEIMEKNSLKTAIIVSNKFHLKRASVIAKRIG 156

Query: 141 YN 142
            +
Sbjct: 157 ID 158


>gb|AAB61159.1| putative membrane protein [Staphylococcus epidermidis]
          Length = 330

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 65/92 (70%), Gaps = 3/92 (3%)

Query: 52  REGKFPRFIVSGGLDRVDYKYTEAEGMKNYLVEQGVPENAIILEDKSTSTYENLRFSQKL 111
           ++ K  +F++SGG  + D + +E++ MK YL+ QGV EN II E+KS STYENL+FS+ L
Sbjct: 192 KKDKHTKFLLSGGQGK-DERISESQAMKKYLIAQGVNENRIICENKSQSTYENLKFSKSL 250

Query: 112 MKSKDLNTAVIITHTFHGQRALEIARELNYNR 143
           + SK+  T +I ++ +H  RA+ IA++L Y+ 
Sbjct: 251 I-SKN-ATIIICSNNYHILRAVFIAKKLKYSH 280


>ref|NP_561725.1| hypothetical protein [Clostridium perfringens]
 dbj|BAB80515.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 206

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 5/107 (4%)

Query: 74  EAEGMKNYLVEQGVPENAIILEDKSTSTYENLRFSQKLMKSK--DLNTAVIITHTFHGQR 131
           E+E MKN+LV +G+  N II EDKS ST++NL FS+K+++ +  D +  +I+T  FH  R
Sbjct: 96  ESEAMKNFLVNKGINPNRIIEEDKSKSTFQNLEFSKKILEERHADKDEVLIVTSDFHLFR 155

Query: 132 ALEIARELNYNRPELGLTDSQVMSM-LKYKTREILAYTKWKMQQLFL 177
           A EIA  LN      GL     +S+ ++Y  RE  A  K  +Q+ FL
Sbjct: 156 AKEIADYLNIKNE--GLPSKTPISLRVQYMVREFPAMIKLLLQEAFL 200


>ref|NP_782538.1| membrane associated protein [Clostridium tetani E88]
 gb|AAO36475.1| membrane associated protein [Clostridium tetani E88]
          Length = 192

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 44  LDYGLELYREGKFPRFIVSGGLDRVDYKYTEAEGMKNYLVEQGVPENAIILEDKSTSTYE 103
           ++ G  LY+EG + R+I++ G        +EAE MK YL+ +G+ E  II EDKSTST E
Sbjct: 61  IEEGYRLYKEG-YGRYILASGGKGPGESISEAEAMKRYLISKGIKEEYIIKEDKSTSTME 119

Query: 104 NLRFSQKLMKSKDLNTAVIITHTFHGQRA 132
           NL+   K+M+ K L  AVI+++ +H +RA
Sbjct: 120 NLKNCNKIMEKKGLKNAVIVSNKYHLKRA 148


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 256,103,109
Number of extensions: 9518663
Number of successful extensions: 22432
Number of sequences better than 1.0e-05: 92
Number of HSP's gapped: 22423
Number of HSP's successfully gapped: 92
Length of query: 177
Length of database: 757,237,578
Length adjustment: 117
Effective length of query: 60
Effective length of database: 439,570,995
Effective search space: 26374259700
Effective search space used: 26374259700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 122 (51.6 bits)