BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0036.p (453 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00110024.1| COG1201: Lhr-like helicases [Nostoc punctiforme] 449 e-125 ref|NP_487371.1| ATP-dependent helicase [Nostoc sp. PCC 7120] >g... 442 e-122 ref|ZP_00046358.1| COG1201: Lhr-like helicases [Lactobacillus ga... 385 e-105 ref|NP_965566.1| hypothetical protein LJ1760 [Lactobacillus john... 379 e-103 gb|EAJ81205.1| unknown [environmental sequence] 243 1e-62 >ref|ZP_00110024.1| COG1201: Lhr-like helicases [Nostoc punctiforme] Length = 724 Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/404 (54%), Positives = 295/404 (73%), Gaps = 12/404 (2%) Query: 3 SNPFYRLAPFIKEFIYKNRWETLREAQVDACRVLFDTPHHLLIASGTASGKTEAAFFPAL 62 S+ F RL+PFI+E+IY ++W LR Q+ AC+V+FDT HLL+ + TA+GKTEAAF P L Sbjct: 2 SDAFSRLSPFIQEYIYHHQWTELRPVQIAACKVIFDTDAHLLVTAATAAGKTEAAFLPIL 61 Query: 63 TQLYEDPSASVGILYIAPLKALINDQFTRLNDLLREGNIPVWHWHGDVPQADKTKLMQNP 122 T L+ +P+ ++G LYI+P+KALINDQF RLN LL+E +IPVWHWHGDV Q+ K KL+ NP Sbjct: 62 TLLHTNPATTIGALYISPIKALINDQFERLNYLLKEADIPVWHWHGDVSQSRKNKLLNNP 121 Query: 123 SGVLQITPESLEGLLMNRPNAIPALFHDLRFIIVDEVHAFMGADRGIQVLSQLARISRMA 182 G+LQITPESLE LL+N+ N + LF DLRF+I+DE+HAFMG++RG Q++ QL R++++ Sbjct: 122 QGILQITPESLESLLINKNNDLLRLFGDLRFVIIDEIHAFMGSERGCQIICQLQRLAKLT 181 Query: 183 GCHPRRIGLSATLSDYASVTEWLAAGTRESVEVSAPQG-GRKLRLSVEHFSFPDARDEVQ 241 PRRIGLSATL DY+ WL++GT +SV G R+++L+VEHF D DE + Sbjct: 182 QKQPRRIGLSATLGDYSLAENWLSSGTDKSVITPQTDGIKRQIKLAVEHFYISDEVDESE 241 Query: 242 AEHLERARQAYYGFIYDHTHLKKALIFTNSRTDAEEAILEXXXXRLAAKRGERDVFHVHH 301 A AY +I++ + +K LIF N+RT E I ++A ++G D++HVHH Sbjct: 242 AT-------AYEKYIFNLSKSRKCLIFANNRTRTESVI--ASLRQIATEQGLPDIYHVHH 292 Query: 302 GSISAMLREETEAALRQGPGPAVAAATLTLELGIDLGELERVLQLGAPYSCASFVQRLGR 361 GSISA LR+ E A+R+ PAV AATLTLELGID+G LERV+QL +P S ASF+QRLGR Sbjct: 293 GSISASLRQAAENAMREPNNPAVTAATLTLELGIDIGHLERVIQLESPLSVASFLQRLGR 352 Query: 362 SGRRGDAASEMIFVTPEEED-EEAQLPARMPWTLLRAIAVIELY 404 SGRRG+AA +M F+ EE+ EA LP ++PW LL++IA+I+LY Sbjct: 353 SGRRGEAA-DMRFICAEEKPLSEASLPEQIPWQLLQSIAIIQLY 395 >ref|NP_487371.1| ATP-dependent helicase [Nostoc sp. PCC 7120] pir||AD2222 ATP-dependent helicase [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB75030.1| ATP-dependent helicase [Nostoc sp. PCC 7120] Length = 722 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 217/404 (53%), Positives = 291/404 (72%), Gaps = 12/404 (2%) Query: 3 SNPFYRLAPFIKEFIYKNRWETLREAQVDACRVLFDTPHHLLIASGTASGKTEAAFFPAL 62 +N F RLAPFI+E+IY ++W LR Q AC V+FD+ HLLIA+ TA+GKTEAAF P L Sbjct: 2 TNAFNRLAPFIQEYIYHHQWTELRPVQTAACEVVFDSDAHLLIAAATAAGKTEAAFLPVL 61 Query: 63 TQLYEDPSASVGILYIAPLKALINDQFTRLNDLLREGNIPVWHWHGDVPQADKTKLMQNP 122 T L+++P++++G LYI P+KALINDQF RLNDLLR +IPV+HWHGDV Q+ K KL++NP Sbjct: 62 TLLHDNPASTIGALYIGPIKALINDQFARLNDLLRLADIPVYHWHGDVAQSRKNKLLKNP 121 Query: 123 SGVLQITPESLEGLLMNRPNAIPALFHDLRFIIVDEVHAFMGADRGIQVLSQLARISRMA 182 G+LQITPESLE LL+N+ I LF DLRF+++DE+HAFMG++RG Q++ QL R++ + Sbjct: 122 QGILQITPESLESLLVNKHKEILRLFGDLRFVVIDEIHAFMGSERGCQIICQLQRLTNLT 181 Query: 183 GCHPRRIGLSATLSDYASVTEWLAAGT-RESVEVSAPQGGRKLRLSVEHFSFPDARDEVQ 241 PRRIGLSATL DY+ EWL GT R+ + G R+++L++EHF DE + Sbjct: 182 KTQPRRIGLSATLGDYSMAEEWLRLGTNRQVITPKVEAGKRQIKLALEHFYIAKDVDESE 241 Query: 242 AEHLERARQAYYGFIYDHTHLKKALIFTNSRTDAEEAILEXXXXRLAAKRGERDVFHVHH 301 A AY +I++ + +K LIF N+RT E I ++A+++ D++HVHH Sbjct: 242 A-------TAYEQYIFNLSQSRKCLIFANNRTQTESII--ASLRQIASQQAHPDIYHVHH 292 Query: 302 GSISAMLREETEAALRQGPGPAVAAATLTLELGIDLGELERVLQLGAPYSCASFVQRLGR 361 GSISA LR+ E A+R+ PAV AATLTLELGID+G LERV+QL AP S ASF+QRLGR Sbjct: 293 GSISASLRQVAENAMREPHNPAVTAATLTLELGIDIGHLERVIQLEAPLSVASFLQRLGR 352 Query: 362 SGRRGDAASEMIFVTPEEE-DEEAQLPARMPWTLLRAIAVIELY 404 +GRRG+AA +M F+ E+E EA LP ++PW LL+ IA+I+LY Sbjct: 353 AGRRGEAA-DMRFICAEDEISAEAPLPEQIPWQLLQCIAIIQLY 395 >ref|ZP_00046358.1| COG1201: Lhr-like helicases [Lactobacillus gasseri] Length = 740 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 197/413 (47%), Positives = 276/413 (66%), Gaps = 17/413 (4%) Query: 6 FYRLAPFIKEFIYKNRWETLREAQVDACRVLFDTPHHLLIASGTASGKTEAAFFPALTQL 65 F R APFI+++IY++ W+ LR QV A +F++ ++L+A+ TASGKTEAAFFP LT L Sbjct: 4 FTRFAPFIQDYIYEHNWKNLRSIQVGAAETIFNSQDNVLLAASTASGKTEAAFFPILTDL 63 Query: 66 YEDPSASVGILYIAPLKALINDQFTRLNDLLREGNIPVWHWHGDVPQADKTKLMQNPSGV 125 YE+PS+SVG+LYI+PLKALINDQ+ RL DL ++ +IP+W WHG+V Q K KL+++PSG+ Sbjct: 64 YENPSSSVGVLYISPLKALINDQYERLTDLCQDVDIPIWRWHGEVAQTQKRKLLKHPSGI 123 Query: 126 LQITPESLEGLLMNRPNAIPALFHDLRFIIVDEVHAFMGADRGIQVLSQLARISRMAGCH 185 LQITPESLE L++N+ IP LFHDLR++++DE+H+F+ +DRG Q + R+S+MAG Sbjct: 124 LQITPESLESLMINKHMDIPNLFHDLRYVVIDELHSFLRSDRGGQTFCLIERLSKMAGVD 183 Query: 186 PRRIGLSATLSDYASVTEWLAAGTRESVEVSAPQ-GGRKLRLSVEHF--SFPDAR----D 238 PRRIGLSAT+ D S +L AG++ V + GG+ RLS+EHF + P A D Sbjct: 184 PRRIGLSATIGDTESAARFLGAGSKRRTTVPKTESGGQVWRLSMEHFYDNGPQADSSGFD 243 Query: 239 EVQAEHLERARQA------YYGFIYDHTHLKKALIFTNSRTDAEEAILEXXXXRLAAKRG 292 Q E++ QA +I++HT KK L+FTNSR + E + Sbjct: 244 PAQPVLDEKSDQAPQMADPSMAYIFEHTRGKKCLVFTNSREECEAVC--QILRQYCEINH 301 Query: 293 ERDVFHVHHGSISAMLREETEAALRQGPGPAVAAATLTLELGIDLGELERVLQLGAPYSC 352 E D F +HHG++SA R+ EA ++ AT TLELGID+G+LER Q+ AP++ Sbjct: 302 EPDRFLIHHGNLSAAYRQTAEAEMKNEDSLMTTCATATLELGIDIGKLERAFQVDAPFTV 361 Query: 353 ASFVQRLGRSGRRGDAASEMIFVTPEEEDEE-AQLPARMPWTLLRAIAVIELY 404 + F+QR+GR+GRRG+ A EM FV E E A LP +PW+LL+ IA+++LY Sbjct: 362 SGFLQRMGRTGRRGNPA-EMWFVMRESHPESRAMLPEIIPWSLLQGIALVQLY 413 >ref|NP_965566.1| hypothetical protein LJ1760 [Lactobacillus johnsonii NCC 533] gb|AAS09532.1| hypothetical protein LJ1760 [Lactobacillus johnsonii NCC 533] Length = 740 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/413 (47%), Positives = 276/413 (66%), Gaps = 17/413 (4%) Query: 6 FYRLAPFIKEFIYKNRWETLREAQVDACRVLFDTPHHLLIASGTASGKTEAAFFPALTQL 65 F R APFI+++IY++ W+ LR QV A +F++ ++L+A+ TASGKTEAAFFP LT L Sbjct: 4 FTRFAPFIQDYIYEHGWKNLRSIQVGAAETIFNSRDNVLLAASTASGKTEAAFFPILTDL 63 Query: 66 YEDPSASVGILYIAPLKALINDQFTRLNDLLREGNIPVWHWHGDVPQADKTKLMQNPSGV 125 YE+P SVG+LYI+PLKALINDQ+ RLN+L ++ +IPVW WHG+V Q K KL+++PSG+ Sbjct: 64 YENPPQSVGVLYISPLKALINDQYERLNELCQDVDIPVWRWHGEVTQTQKRKLLKHPSGI 123 Query: 126 LQITPESLEGLLMNRPNAIPALFHDLRFIIVDEVHAFMGADRGIQVLSQLARISRMAGCH 185 LQITPESLE L++N+ IP LFHDLR+I++DE+H+F+ +DRG Q + R+S+MA Sbjct: 124 LQITPESLESLMINKHMDIPNLFHDLRYIVIDELHSFLRSDRGGQTFCLIERLSKMADVD 183 Query: 186 PRRIGLSATLSDYASVTEWLAAGTRESVEVSAPQG-GRKLRLSVEHF--SFPDAR----D 238 RRIGLSAT+ D S E+L AG++ V +G G+ RLS+EHF + P A D Sbjct: 184 LRRIGLSATIGDTKSAAEFLGAGSKHKTTVPKVEGSGQVWRLSMEHFYDNGPQADSNDFD 243 Query: 239 EVQAEHLERARQA------YYGFIYDHTHLKKALIFTNSRTDAEEAILEXXXXRLAAKRG 292 Q E++ QA +I++HT KK L+FTNSR + EA+ + K Sbjct: 244 PAQPVLDEKSDQAPNTADPSMAYIFEHTRGKKCLVFTNSREEC-EAVCQILRQYCEVKH- 301 Query: 293 ERDVFHVHHGSISAMLREETEAALRQGPGPAVAAATLTLELGIDLGELERVLQLGAPYSC 352 E D F +HHG++SA R+ E ++ AT TLELGID+G+LER Q+ AP++ Sbjct: 302 EPDRFLIHHGNLSAAYRQTAEVEMKDEDSLMTTCATATLELGIDIGKLERAFQIDAPFTV 361 Query: 353 ASFVQRLGRSGRRGDAASEMIFVTPEEEDEE-AQLPARMPWTLLRAIAVIELY 404 + F+QR+GR+GRRG+ SEM FV E E A LP +PW+LL+ IA+++LY Sbjct: 362 SGFLQRMGRTGRRGN-PSEMWFVMRESHPESRAMLPEIIPWSLLQGIALVQLY 413 >gb|EAJ81205.1| unknown [environmental sequence] Length = 758 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 166/421 (39%), Positives = 228/421 (54%), Gaps = 26/421 (6%) Query: 3 SNPFYRLAPFIKEFIYKNRWETLREAQVDACRVLFDTPHHLLIASGTASGKTEAAFFPAL 62 S+ F L P I+++I++ W LR+AQ A + ++I++ TA+GKTEAAF P L Sbjct: 5 SSSFELLHPLIQQWIWQAGWTELRDAQEKAIPPIIAGSTDVIISAATAAGKTEAAFLPIL 64 Query: 63 TQLYEDPSASVGILYIAPLKALINDQFTRLNDLLREGNIPVWHWHGDVPQADKTKLMQNP 122 ++L S L ++PLKALINDQ+ RL L IPV WHGDV + K + Sbjct: 65 SRLLAPDSLGHSALCVSPLKALINDQWDRLTQLCETLEIPVVPWHGDVAASRKQAFTKGR 124 Query: 123 SGVLQITPESLEGLLMNRPNAIPALFHDLRFIIVDEVHAFMGADRGIQVLSQLARISRMA 182 +G + ITPESLE L NR + I ALF L +++VDE+HAFMG++RG+Q+ S L R+ Sbjct: 125 AGCVLITPESLEALFYNRGSGISALFDRLDYVVVDELHAFMGSERGMQLQSLLDRLETAL 184 Query: 183 GCHPRRIGLSATLSDYASVTEWLAAGTRESVE-VSAPQGGRKLRLSVEHF-SFPD--ARD 238 RIGLSATL D E+L G E V V + LR+ V+ + P + + Sbjct: 185 ARRIPRIGLSATLGDIRLAAEYLRPGEGEKVTIVESTMSSSSLRILVKGYHDGPPLLSEE 244 Query: 239 EVQA-----EHLERARQAYYGF------IYDHTHLKKALIFTNSRTDAEEAILEXXXXRL 287 E++A E + A G IYD+ + LIF NSR E+ L Sbjct: 245 EIEARTSRGESVTAMETAGAGMLQIARHIYDNLRGRNHLIFPNSRQKVEQ------YTSL 298 Query: 288 AAKRGERDV----FHVHHGSISAMLREETEAALRQGPGPAVAAATLTLELGIDLGELERV 343 ERD + HHG++S LREETE AL+Q PA A AT TLELG+D+G +E V Sbjct: 299 LRAMCERDCRPAEYWPHHGNLSRELREETEGALKQTSSPASAIATSTLELGVDIGPVESV 358 Query: 344 LQLGAPYSCASFVQRLGRSGRR-GDAASEMIFVTPEEEDEEAQLPARMPWTLLRAIAVIE 402 +Q+G S +S QRLGRSGRR G A + D A +P R+ +++ IA I+ Sbjct: 359 VQIGPAPSVSSLRQRLGRSGRRKGMPAILRGYALEAPLDARAAVPDRLREDMVQLIAQID 418 Query: 403 L 403 L Sbjct: 419 L 419 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 586,345,441 Number of extensions: 22169028 Number of successful extensions: 65809 Number of sequences better than 1.0e-05: 359 Number of HSP's gapped: 65489 Number of HSP's successfully gapped: 399 Length of query: 453 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 324 Effective length of database: 406,989,807 Effective search space: 131864697468 Effective search space used: 131864697468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)