BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0024.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_618417.1| conserved hypothetical protein [Methanosarcina ... 215 4e-55 ref|ZP_00076063.1| COG2320: Uncharacterized conserved protein [M... 210 1e-53 ref|NP_632474.1| conserved protein [Methanosarcina mazei Goe1] >... 210 1e-53 ref|NP_979825.1| conserved hypothetical protein [Bacillus cereus... 131 7e-30 ref|NP_657424.1| hypothetical protein predicted by GeneMark [Bac... 130 2e-29 >ref|NP_618417.1| conserved hypothetical protein [Methanosarcina acetivorans str. C2A] gb|AAM06897.1| conserved hypothetical protein [Methanosarcina acetivorans str. C2A] Length = 186 Score = 215 bits (547), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 97/165 (58%), Positives = 128/165 (77%) Query: 10 IVEVVPYDPAWKKEFIRLRDFLLEITGDLIIAAEHVGSTSVEGLSAKPIIDIDLVMESYE 69 IV VVPYDP WK EF++++ +++ TGD I EHVGST+VEGL++KPIIDID+V++SY+ Sbjct: 20 IVRVVPYDPEWKTEFLKIKAMIVDCTGDFITGVEHVGSTAVEGLASKPIIDIDVVIDSYD 79 Query: 70 VFPEIVQRLSQYGYVHQGDLGIEGREAFRREQEDGFMKYHLYVCPKDGKGYLEHIALRDY 129 +FP + RLS+ G+ H+G+LGIEGRE+F+R D FM YHLYVCPKDGKGYLEHIA RDY Sbjct: 80 IFPAVKDRLSEIGFEHKGNLGIEGRESFKRTFIDDFMPYHLYVCPKDGKGYLEHIAFRDY 139 Query: 130 MRLNPAAAREYEEVKLKLADQFRYDIDAYCEGKTEVVHSILRKAG 174 +R +P A + Y E+K KLA+QFR DI Y +GK E + +IL+ Sbjct: 140 LRNHPEAVKAYGELKTKLAEQFRTDIIGYMDGKHEFLQNILKNVN 184 >ref|ZP_00076063.1| COG2320: Uncharacterized conserved protein [Methanosarcina barkeri] Length = 173 Score = 210 bits (535), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 95/163 (58%), Positives = 126/163 (77%) Query: 10 IVEVVPYDPAWKKEFIRLRDFLLEITGDLIIAAEHVGSTSVEGLSAKPIIDIDLVMESYE 69 IV VVPY+P WK EF++++ +++ GDLI EHVGST+VEGL++KPIIDID+V++SY+ Sbjct: 8 IVRVVPYEPEWKNEFLKIKAMIVDCAGDLITGVEHVGSTAVEGLASKPIIDIDVVIDSYD 67 Query: 70 VFPEIVQRLSQYGYVHQGDLGIEGREAFRREQEDGFMKYHLYVCPKDGKGYLEHIALRDY 129 VFP++ RLS+ G+ H+G+LG+EGRE F+R D FM Y+LYVCPKDGKGYLEHI RDY Sbjct: 68 VFPDVKDRLSKIGFEHEGNLGVEGREVFKRTFIDDFMPYNLYVCPKDGKGYLEHIVFRDY 127 Query: 130 MRLNPAAAREYEEVKLKLADQFRYDIDAYCEGKTEVVHSILRK 172 +R +P A + Y E+K++LA QFR DI AY K E V SIL+ Sbjct: 128 LRTHPEAVKVYGELKVRLAKQFRTDITAYINSKHEFVQSILKN 170 >ref|NP_632474.1| conserved protein [Methanosarcina mazei Goe1] gb|AAM30146.1| conserved protein [Methanosarcina mazei Goe1] Length = 174 Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 93/163 (57%), Positives = 128/163 (78%) Query: 10 IVEVVPYDPAWKKEFIRLRDFLLEITGDLIIAAEHVGSTSVEGLSAKPIIDIDLVMESYE 69 IV VVPYDP WK EF++++ +++ GDLII HVGST++EGL++KPIIDID+V++SY Sbjct: 8 IVRVVPYDPEWKTEFLKIKAMIVDCAGDLIIDVVHVGSTAIEGLASKPIIDIDVVIDSYY 67 Query: 70 VFPEIVQRLSQYGYVHQGDLGIEGREAFRREQEDGFMKYHLYVCPKDGKGYLEHIALRDY 129 VFP + RL++ G+ H+G+LG+EGREAF+R D FM YHLY+CPKDGKGYLEHIA R+Y Sbjct: 68 VFPAVKDRLAKIGFEHEGNLGVEGREAFKRTFVDDFMPYHLYICPKDGKGYLEHIAFRNY 127 Query: 130 MRLNPAAAREYEEVKLKLADQFRYDIDAYCEGKTEVVHSILRK 172 +R +P A + Y E+K++LA+QFR DI +Y K E V ++L+K Sbjct: 128 LRDHPEAVKAYGELKMRLAEQFRTDITSYVNAKREFVQNVLKK 170 >ref|NP_979825.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS42433.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 175 Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 70/168 (41%), Positives = 106/168 (63%), Gaps = 9/168 (5%) Query: 11 VEVVPYDPAWKKEFIRLRDFLLEITGDLIIAAEHVGSTSVEGLSAKPIIDIDLVMESYEV 70 + + Y+ W+ EF +L+ + ++ D I++ EHVGSTS++GL+AKPI+DID+V+E Y + Sbjct: 5 ITIEEYNIKWESEFNKLQTLINDVMEDSILSIEHVGSTSIKGLAAKPILDIDIVIEDYGI 64 Query: 71 FPEIVQRLSQYGYVHQGDLGIEGREAFRREQE----DG----FMKYHLYVCPKDGKGYLE 122 FPE+V L GY HQ +GREAF R+ DG +M++HLYVC K+ + Sbjct: 65 FPEVVTNLEAIGYYHQEKWSYKGREAFGRKDTFVPWDGESTDWMEHHLYVCDKESEELRR 124 Query: 123 HIALRDYMRLNPAAAREYEEVKLKLADQFRYDIDAYCEGKTEVVHSIL 170 HIA RDY+R + A EY +K +LA + + +Y EGKT+ + +IL Sbjct: 125 HIAFRDYLREHEDVAGEYGRLKDELARESKSRT-SYSEGKTKFITNIL 171 >ref|NP_657424.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_845842.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP27328.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 175 Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/170 (40%), Positives = 106/170 (62%), Gaps = 9/170 (5%) Query: 11 VEVVPYDPAWKKEFIRLRDFLLEITGDLIIAAEHVGSTSVEGLSAKPIIDIDLVMESYEV 70 + + Y+ W+ EF +L+ + ++ D I++ EHVGSTS++GL+AKP++DID+V+E Y Sbjct: 5 ITIEEYNIKWESEFNKLQTLINDVMEDSILSIEHVGSTSIKGLAAKPVLDIDIVIEDYGF 64 Query: 71 FPEIVQRLSQYGYVHQGDLGIEGREAFRREQE----DG----FMKYHLYVCPKDGKGYLE 122 FP++V +L GY HQ + +GREAF R+ DG +M++HLYVC K+ + Sbjct: 65 FPKVVTKLGAIGYYHQAEWSYKGREAFGRKDAFVPWDGESTDWMEHHLYVCDKESEELRR 124 Query: 123 HIALRDYMRLNPAAAREYEEVKLKLADQFRYDIDAYCEGKTEVVHSILRK 172 HIA RDY+R A EY +K +LA + + +Y EGKT + +IL K Sbjct: 125 HIAFRDYLREYEDVAVEYGHLKEELARETKSRT-SYSEGKTAFITNILEK 173 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.141 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 268,147,076 Number of extensions: 10835070 Number of successful extensions: 24662 Number of sequences better than 1.0e-05: 37 Number of HSP's gapped: 24632 Number of HSP's successfully gapped: 37 Length of query: 177 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 60 Effective length of database: 439,570,995 Effective search space: 26374259700 Effective search space used: 26374259700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)