BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0020.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_465025.1| similar to unknown proteins [Listeria monocytog... 223 2e-57 ref|NP_470871.1| similar to unknown proteins [Listeria innocua] ... 223 2e-57 ref|ZP_00172076.1| hypothetical protein Mflag209601 [Methylobaci... 156 3e-37 ref|NP_349262.1| Uncharacterized membrane-associated protein, De... 155 5e-37 ref|ZP_00098016.1| COG0586: Uncharacterized membrane-associated ... 154 2e-36 >ref|NP_465025.1| similar to unknown proteins [Listeria monocytogenes EGD-e] pir||AD1262 hypothetical protein lmo1500 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99578.1| lmo1500 [Listeria monocytogenes] Length = 208 Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 112/206 (54%), Positives = 149/206 (72%), Gaps = 4/206 (1%) Query: 1 MHQLLNAITDAALNLVSSLGIWGIWIGMVLESACIPIPSEVIMLSGGLLIARGTLSFPEV 60 +H L+ ++ D + LV SLG WGI++GM++ES CIP+PSEVIML GG + G L+F V Sbjct: 2 LHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWLV 61 Query: 61 VAAGVLGNLMGSIAAFYVGMHGGRKLLEKYGKYILFNSRHLEQSQRWFDRYGESTVFFTR 120 V AG+ GNL+GS+ A+Y+G GGR L+ K+GKYI N +HL++++ WF RYG VFF R Sbjct: 62 VFAGISGNLVGSLIAYYIGKFGGRALVLKFGKYIFLNVKHLDKAELWFGRYGARAVFFGR 121 Query: 121 MLPFIRTFISLPAGIAGMKTGKFIFFTALGSLPWNIALVYLGYRLGDNWTIVEKYMRPVS 180 +LP IRTFISLPAGIA M KFI +T LG +PWNI L +LGY LG NW++VEKY RP+S Sbjct: 122 VLPVIRTFISLPAGIAKMNVWKFIIYTILGCIPWNIFLTWLGYSLGSNWSVVEKYTRPIS 181 Query: 181 YAICGAVVILIILWL---VRRKKERT 203 Y + A+VI I+++L V K+ R Sbjct: 182 YLML-ALVIAIVVYLAYKVWNKRARN 206 >ref|NP_470871.1| similar to unknown proteins [Listeria innocua] pir||AF1624 hypothetical protein homolog lin1535 [imported] - Listeria innocua (strain Clip11262) emb|CAC96766.1| lin1535 [Listeria innocua] Length = 208 Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 105/192 (54%), Positives = 141/192 (73%) Query: 1 MHQLLNAITDAALNLVSSLGIWGIWIGMVLESACIPIPSEVIMLSGGLLIARGTLSFPEV 60 +H L+ ++ D + LV SLG WGI++GM++ES CIP+PSEVIML GG + G L+F V Sbjct: 2 LHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWLV 61 Query: 61 VAAGVLGNLMGSIAAFYVGMHGGRKLLEKYGKYILFNSRHLEQSQRWFDRYGESTVFFTR 120 V AG+ GNL+GS+ A+Y+G GGR L+ K+GKYI N +HL++++ WF RYG VFF R Sbjct: 62 VFAGIAGNLVGSLIAYYIGKFGGRALVLKFGKYIFLNVKHLDKAELWFGRYGARAVFFGR 121 Query: 121 MLPFIRTFISLPAGIAGMKTGKFIFFTALGSLPWNIALVYLGYRLGDNWTIVEKYMRPVS 180 +LP IRTFISLPAGIA M KF+ +T LG +PWNI L +LGY LG NW++VEKY RP+S Sbjct: 122 VLPVIRTFISLPAGIAKMNVWKFVIYTILGCIPWNIFLTWLGYSLGSNWSVVEKYTRPIS 181 Query: 181 YAICGAVVILII 192 Y + VV +++ Sbjct: 182 YLMLALVVAIVV 193 >ref|ZP_00172076.1| hypothetical protein Mflag209601 [Methylobacillus flagellatus KT] Length = 193 Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 114/181 (62%), Gaps = 1/181 (0%) Query: 19 LGIWGIWIGMVLESACIPIPSEVIMLSGGLLIARGTLSFPEVVAAGVLGNLMGSIAAFYV 78 +G GI + M +ESAC+P+PSE+IM G L+ G L+ V AG +G ++GSI A+Y+ Sbjct: 1 MGYGGIVLLMAIESACVPLPSEIIMPFAGYLVFTGELTLWGVALAGAVGCVVGSIPAYYL 60 Query: 79 GMHGGRKLLEKYGKYILFNSRHLEQSQRWFDRYGESTVFFTRMLPFIRTFISLPAGIAGM 138 GM GGR L+EKYGK++L + L + RWF++YG+ +F R+LP +RTFI+ PAG+A M Sbjct: 61 GMFGGRPLVEKYGKWVLISHHDLHLADRWFEKYGDIIIFVGRLLPAVRTFIAFPAGVARM 120 Query: 139 KTGKFIFFTALGSLPWNIALVYLGYRLGDNWTIVEKYMRPVSYAICGAVVILIILWLVRR 198 GKFI +T +GSL W L Y G + G +W +E Y + V ++ +W +RR Sbjct: 121 HMGKFIAYTFVGSLIWCFLLAYAGMKFGQHWESLEVYFHQFHIVLV-VVGVIFAVWYIRR 179 Query: 199 K 199 Sbjct: 180 H 180 >ref|NP_349262.1| Uncharacterized membrane-associated protein, DedA family [Clostridium acetobutylicum] pir||G97226 uncharacterized membrane-associated protein, DedA family [imported] - Clostridium acetobutylicum gb|AAK80602.1| Uncharacterized membrane-associated protein, DedA family [Clostridium acetobutylicum] Length = 207 Score = 155 bits (392), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 78/194 (40%), Positives = 118/194 (60%), Gaps = 5/194 (2%) Query: 15 LVSSLGIWGIWIGMVLESACIPIPSEVIMLSGGLLIARG-----TLSFPEVVAAGVLGNL 69 L++ LG G + GM+ ESACIPIPSE+++ GG L + TL+ V+ + LG Sbjct: 12 LLAKLGYAGTFFGMLFESACIPIPSEIVLPFGGYLSSSSAPQGHTLNLVLVIISATLGGT 71 Query: 70 MGSIAAFYVGMHGGRKLLEKYGKYILFNSRHLEQSQRWFDRYGESTVFFTRMLPFIRTFI 129 +GSI A+ +G GGR L+ KY + + +E+S+ FD+YG+ +F +R+LP IRTFI Sbjct: 72 VGSILAYTIGAKGGRILVYKYASKLHLSKEKIEKSEAVFDKYGDKIIFLSRLLPIIRTFI 131 Query: 130 SLPAGIAGMKTGKFIFFTALGSLPWNIALVYLGYRLGDNWTIVEKYMRPVSYAICGAVVI 189 SLPAGIA M KF +T +GS W+ LVY G+ +G NW + Y Y + GA+++ Sbjct: 132 SLPAGIAKMDFTKFTIYTLVGSAIWSTLLVYAGFVMGKNWESIRSYFHIADYLVAGAIIL 191 Query: 190 LIILWLVRRKKERT 203 I+ ++ K++T Sbjct: 192 FIVYRIIVYIKKKT 205 >ref|ZP_00098016.1| COG0586: Uncharacterized membrane-associated protein [Desulfitobacterium hafniense] Length = 220 Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 78/193 (40%), Positives = 118/193 (61%), Gaps = 1/193 (0%) Query: 10 DAALNLVSSLGIWGIWIGMVLESACIPIPSEVIMLSGGLLIARGTLSFPEVVAAGVLGNL 69 + + L+SSLG +G+++ M +ESACIP+PSE+I+ G ++ G F A LGNL Sbjct: 26 EFVVELISSLGYFGVFLAMAIESACIPLPSEIILPFTGYMVYIGHFDFWTATLAATLGNL 85 Query: 70 MGSIAAFYVGMHGGRKLLEKYGKYILFNSRHLEQSQRWFDRYGESTVFFTRMLPFIRTFI 129 G + A+YVG+ GGR +++YG Y + L+ ++R F R+GE TV R+LP IRTFI Sbjct: 86 FGGLVAYYVGVRGGRPFIQRYGHYFFIKEKELQWTERLFSRHGEITVLVGRLLPVIRTFI 145 Query: 130 SLPAGIAGMKTGKFIFFTALGSLPWNIALVYLGYRLGDNWTIVEKYMRPVSYAICGAVVI 189 SLPAGIA M K +T LG+LPW + L+ +G +LG NW ++ + I G +++ Sbjct: 146 SLPAGIAKMSAVKMAIYTVLGALPWCMFLIIVGEKLGANWNSLKPLFHRLDLVI-GVLIL 204 Query: 190 LIILWLVRRKKER 202 I + ++K R Sbjct: 205 AGIGYFFFKRKGR 217 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.143 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 300,170,882 Number of extensions: 12153459 Number of successful extensions: 41972 Number of sequences better than 1.0e-05: 306 Number of HSP's gapped: 41928 Number of HSP's successfully gapped: 306 Length of query: 204 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 84 Effective length of database: 431,425,698 Effective search space: 36239758632 Effective search space used: 36239758632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 123 (52.0 bits)