BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0016.p (126 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_846673.1| transcriptional regulator, GntR family [Bacillu... 132 4e-30 ref|NP_980592.1| transcriptional regulator, GntR family [Bacillu... 131 5e-30 ref|NP_833936.1| Transcriptional regulator, GntR family [Bacillu... 131 6e-30 ref|NP_658259.1| HTH_GNTR, helix_turn_helix gluconate operon tra... 129 2e-29 ref|NP_781465.1| transcriptional regulator, gntR family [Clostri... 124 5e-28 >ref|NP_846673.1| transcriptional regulator, GntR family [Bacillus anthracis str. Ames] gb|AAP28159.1| transcriptional regulator, GntR family [Bacillus anthracis str. Ames] Length = 124 Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 65/108 (60%), Positives = 85/108 (78%) Query: 1 MNILISSTSGEPIYAQITGQVRQLILQGELVSGTPLPSIRQLAKELQISVITTKRAYEEL 60 MNI+IS++S +PIY QI Q+ QLIL G L G LPSIR LAKELQISVITTKRAYEEL Sbjct: 1 MNIIISNSSQDPIYVQIRKQLSQLILNGGLKGGDQLPSIRNLAKELQISVITTKRAYEEL 60 Query: 61 EREGLINSIVGKGSFVSGADQEFIREQRLRIMEGKLKEIIDESRLLGM 108 E+EG I ++ GKG++VS + E ++EQRLR++E K +EI++ES+ L + Sbjct: 61 EKEGYIETVAGKGTYVSRKNNELLKEQRLRLLESKAEEIVNESKALQL 108 >ref|NP_980592.1| transcriptional regulator, GntR family [Bacillus cereus ATCC 10987] gb|AAS43200.1| transcriptional regulator, GntR family [Bacillus cereus ATCC 10987] Length = 124 Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 65/108 (60%), Positives = 85/108 (78%) Query: 1 MNILISSTSGEPIYAQITGQVRQLILQGELVSGTPLPSIRQLAKELQISVITTKRAYEEL 60 MNI+IS++S +PIY QI Q+ QLIL G L G LPSIR LAKELQISVITTKRAYEEL Sbjct: 1 MNIIISNSSQDPIYVQIRKQLSQLILNGGLKGGDQLPSIRSLAKELQISVITTKRAYEEL 60 Query: 61 EREGLINSIVGKGSFVSGADQEFIREQRLRIMEGKLKEIIDESRLLGM 108 E+EG I ++ GKG++VS + E ++EQRLR++E K +EI++ES+ L + Sbjct: 61 EKEGYIETVAGKGTYVSRKNNELLKEQRLRLLESKAEEIVNESKALQL 108 >ref|NP_833936.1| Transcriptional regulator, GntR family [Bacillus cereus ATCC 14579] gb|AAP11137.1| Transcriptional regulator, GntR family [Bacillus cereus ATCC 14579] Length = 124 Score = 131 bits (329), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 65/108 (60%), Positives = 85/108 (78%) Query: 1 MNILISSTSGEPIYAQITGQVRQLILQGELVSGTPLPSIRQLAKELQISVITTKRAYEEL 60 MNI+IS++S +PIY QI Q+ QLIL G L G LPSIR LAKELQISVITTKRAYEEL Sbjct: 1 MNIIISNSSQDPIYVQIRKQLSQLILNGGLKGGDQLPSIRSLAKELQISVITTKRAYEEL 60 Query: 61 EREGLINSIVGKGSFVSGADQEFIREQRLRIMEGKLKEIIDESRLLGM 108 E+EG I ++ GKG++VS + E ++EQRLR++E K +EI+ ES++L + Sbjct: 61 EKEGYIETVAGKGTYVSRKNNELLKEQRLRLLESKAEEIVKESKVLQL 108 >ref|NP_658259.1| HTH_GNTR, helix_turn_helix gluconate operon transcriptional repressor [Bacillus anthracis A2012] Length = 124 Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/108 (59%), Positives = 84/108 (77%) Query: 1 MNILISSTSGEPIYAQITGQVRQLILQGELVSGTPLPSIRQLAKELQISVITTKRAYEEL 60 MNI+IS++S +PIY QI Q+ QLIL G L G LPSIR LAKELQISVITTKRAYEEL Sbjct: 1 MNIIISNSSQDPIYVQIRKQLSQLILNGGLKGGDQLPSIRNLAKELQISVITTKRAYEEL 60 Query: 61 EREGLINSIVGKGSFVSGADQEFIREQRLRIMEGKLKEIIDESRLLGM 108 E+EG I ++ GKG++VS + E ++EQR R++E K +EI++ES+ L + Sbjct: 61 EKEGYIETVAGKGTYVSRKNNELLKEQRXRLLESKAEEIVNESKALQL 108 >ref|NP_781465.1| transcriptional regulator, gntR family [Clostridium tetani E88] gb|AAO35402.1| transcriptional regulator, gntR family [Clostridium tetani E88] Length = 121 Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 60/108 (55%), Positives = 82/108 (75%) Query: 1 MNILISSTSGEPIYAQITGQVRQLILQGELVSGTPLPSIRQLAKELQISVITTKRAYEEL 60 M I+IS++S EPIY QI Q++ LIL +L G LPSIR LAKEL ISVITTKRAY+EL Sbjct: 1 MKIIISNSSKEPIYEQIATQIKNLILSNKLKEGEILPSIRNLAKELSISVITTKRAYDEL 60 Query: 61 EREGLINSIVGKGSFVSGADQEFIREQRLRIMEGKLKEIIDESRLLGM 108 E+EG I + G+GSFV+ ++E +RE+RL I+E KL E+I++ +L+ + Sbjct: 61 EKEGFIETTPGRGSFVASQNKELLRERRLSIIEKKLTEVINDCKLMNL 108 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.136 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 144,239,516 Number of extensions: 5457787 Number of successful extensions: 19647 Number of sequences better than 1.0e-05: 212 Number of HSP's gapped: 19690 Number of HSP's successfully gapped: 212 Length of query: 126 Length of database: 757,237,578 Length adjustment: 89 Effective length of query: 37 Effective length of database: 515,593,767 Effective search space: 19076969379 Effective search space used: 19076969379 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)