BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0008.p (539 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAA94699.1| dipeptide transporter DppA homolog [Ochrobactrum... 175 3e-42 ref|ZP_00004306.1| COG0747: ABC-type dipeptide transport system,... 164 4e-39 ref|ZP_00081474.1| COG0747: ABC-type dipeptide transport system,... 154 5e-36 ref|ZP_00029179.1| COG0747: ABC-type dipeptide transport system,... 150 1e-34 ref|NP_386926.1| PUTATIVE DIPEPTIDE-BINDING ABC TRANSPORTER PROT... 147 6e-34 >dbj|BAA94699.1| dipeptide transporter DppA homolog [Ochrobactrum anthropi] Length = 508 Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 122/453 (26%), Positives = 227/453 (50%), Gaps = 10/453 (2%) Query: 61 GGTFVYGRPAAVTSFDLHNEITSNNAFAIDKVFESLVAFDSKGEIVD-WLAKSHSISEDG 119 GGT R S D + + + I ++ ESL++ D+ G ++ LA+S +++D Sbjct: 26 GGTLTVARSDEALSLDPFAVSDNGSIYNITQICESLISADASGAGLEPGLAQSWKVADDA 85 Query: 120 LTYTFVLRDGLKFSNGTEVTAEDAVFSLNRHLKVGGPLEISAK-VDTIKAQDKQTLVITL 178 L+ VLRDG+KFS GT VT +D +FSL + G + + + +I D +T+ +TL Sbjct: 86 LSVDLVLRDGIKFSTGTPVTVDDVIFSLQKAADPQGSFGFAFEPIKSIDKIDDKTVRLTL 145 Query: 179 KEPYTPFISELSNFSNGILPNNFGGVTEAEFFKKPVGTGPFVVESWDPAGDLTFTKNPNY 238 K PY+ S LS ++ I+ + F PV TGPF VES++ N Y Sbjct: 146 KHPYSALESALSLYAASIVSKADYEKDPSAFGSNPVCTGPFKVESYERGTQAVLVPNTYY 205 Query: 239 WQEGK-----PYIDKLVYKLIEDDSQAINQLKAGEVNAIESLALQNANEIKNGTDTAVLT 293 W++G+ PY+D+++ K + + + I L+ G+V+ ++ L A IK ++ Sbjct: 206 WRQGEDGKALPYLDEVILKYVPESNSRILGLQNGDVDVSLAVPLNQAEAIKAIDGISLEV 265 Query: 294 NGSWVTEQLFFNTLDEHFKDVHVXXXXXXXXXXXGLTKALTFGYAQTANSLLPTTIPYNG 353 + S+ + +F N + D + + KA+ FGY + NS +P ++ Sbjct: 266 SPSFRLDYVFLNHAKKPLDDKNFRLALNYAANREAILKAVYFGYGEIPNSYMPKVTYWS- 324 Query: 354 NDTIKPLNFNVDEAKAELAKSAFPNGFSTKLLVASGNSTRXXXXXXXXXXXXXXXXKIEI 413 D + + F+++++K +LAK + +G +++V +GN++ + EI Sbjct: 325 -DKVARIPFDIEKSK-QLAKDSGYDGAPIQIMVDTGNTSFRTIAAILQQGWKQAGIESEI 382 Query: 414 ESVELAAFRERFFAYDFAAMLNSGQADSPEANSILAFQTDPKGFSKSYWTHYTNDEVTKL 473 ++ D+ A ++ +D + + + + Q D G + +++++Y NDEVT+L Sbjct: 383 VEYDVGTAFSMSEKGDYQAYVSYITSDISDDDELASIQADGTGPTAAFFSNYKNDEVTRL 442 Query: 474 LYEGQKTADGDGRAEIYSKLLQTLADEVPYIPL 506 L E ++TAD RAE+Y+K+ +T+ + IP+ Sbjct: 443 LAEARQTADKAKRAELYAKVQETVYHDGYSIPI 475 >ref|ZP_00004306.1| COG0747: ABC-type dipeptide transport system, periplasmic component [Rhodobacter sphaeroides] Length = 629 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 131/480 (27%), Positives = 220/480 (45%), Gaps = 14/480 (2%) Query: 61 GGTFVYGRPAAVTSFDLHNEITSNNAFAIDKVFESLVAFDSKG-EIVDWLAKSHSISEDG 119 G GR T+FD + + + V++ LV D G ++ LA+S ISEDG Sbjct: 152 AGVLTIGRREDGTTFDPIATAQNVDFWVFSNVYDVLVRVDKTGTKLEPGLAESWEISEDG 211 Query: 120 LTYTFVLRDGLKFSNGTEVTAEDAVFSLNRHLKVGGPL--EISAKVDTIKAQDKQTLVIT 177 LTYTF LRD FS+G+ +TAEDA F+L R L + A ++T +A D +TLV+ Sbjct: 212 LTYTFHLRDA-NFSDGSPITAEDAAFTLLRIRDSELSLWSDSYAVIETAEATDPKTLVVK 270 Query: 178 LKEPYTPFISELSNFSNGILPN-NFGGVTEAEFFKKPVGTGPFVVESWDPAGDLTFTKNP 236 LK P PF+S ++ + IL + E + +KPV +G F V+ W + KNP Sbjct: 271 LKTPSAPFLSTMAMPAVSILSKAGVEAMGEEAYAEKPVASGAFTVKEWRRGDRVILKKNP 330 Query: 237 NYWQEGKPYIDKLVYKLIEDDSQAINQLKAGEVNAIESLALQNANEIKNGTDTAVLTNGS 296 +WQ + +D + + I DD+ + ++AGE++A + E+K T+ V+ S Sbjct: 331 EFWQADRVSLDGVEWISIPDDNSRMLSVQAGELDAAIFVPFSRVAELKKDTNLKVMVEPS 390 Query: 297 WVTEQLFFNTLDEHFKDVHVXXXXXXXXXXXGLTKALTFGYAQTANSLLPTTIPY-NGND 355 + L N E D V + +TFG AQ ANS +P Y N N+ Sbjct: 391 TREDHLLLNHEHEPLNDPKVREAIDLAIDKQAIVDTVTFGQAQIANSYIPAGALYHNDNN 450 Query: 356 TIKPLNFNVDEAKAELAKSAFPNGFSTKLLVASGNSTRXXXXXXXXXXXXXXXXKIEIES 415 ++P + ++AKA LA++ + S +V +GN + ++ Sbjct: 451 LLRP--HDPEKAKALLAEAGVSD-VSLDYVVNAGNEVDEQIAVLLQQQLGQAGITVNLQK 507 Query: 416 VELAAFRERFF--AYDFAAMLNSGQADSPEANSILAFQTDPKGFSKSYWTHYTNDEVTKL 473 ++ + + YD + M + P+ + D + +Y T Y ND V +L Sbjct: 508 MDPSMTWDMLVNGEYDLSVMYWTNDILDPDQKTTFVLGHD---VNMNYMTRYENDTVKQL 564 Query: 474 LYEGQKTADGDGRAEIYSKLLQTLADEVPYIPLYYPDILIGARSSVQDLTVLPNGSVRLE 533 + + + D R +Y+++ + + +I LYY + R+++++ P G LE Sbjct: 565 VADARLEMDPAKREAMYTEIQELSKADTHWIDLYYSPFINVTRANIENFNQNPLGRFFLE 624 >ref|ZP_00081474.1| COG0747: ABC-type dipeptide transport system, periplasmic component [Geobacter metallireducens] Length = 538 Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 123/460 (26%), Positives = 207/460 (45%), Gaps = 30/460 (6%) Query: 92 VFESLVAFDSKGEIVDWLAKSHSISEDGLTYTFVLRDGLKFSNGTEVTAEDAVFSLNRHL 151 VF LV +D E+V LA+S +S DGLT TF LR G+K+ +GTE T+ DA+++ + Sbjct: 69 VFNGLVKYDKNLELVGDLAESWQVSPDGLTITFRLRKGVKWHDGTEFTSRDALYTYRVTI 128 Query: 152 KVGGPL---EISAKVDTIKAQDKQTLVITLKEPYTPFISELSNFSNGILPNNF---GGVT 205 P E +V + +A D+ T +T +P+ P L+++ GILP + +T Sbjct: 129 DPKTPTAYAEDFKQVKSAEAPDRYTFRVTYGKPFAP---ALASWGAGILPAHLLEGKDIT 185 Query: 206 EAEFFKKPVGTGPFVVESWDPAGDLTFTKNPNYWQEGKPYIDKLVYKLIEDDSQAINQLK 265 ++ + PVGTGP+ + W + P+Y+ EG+PYID+ VY++I D S +LK Sbjct: 186 KSPLSRHPVGTGPYRFKEWIAGQKVVLEAFPDYF-EGRPYIDRFVYRIIPDTSTMYLELK 244 Query: 266 AGEVNAIESLALQNANEIKNGTDTAVLTNGSWVTEQ---LFFNTLDEHFKDVHVXXXXXX 322 AG ++ + +Q A + A + L +N + F D V Sbjct: 245 AGGLDMMGLTPVQYARQTDTPDFLARFNKFRYPASAYTYLGYNLRNPLFADRRVRQAIAC 304 Query: 323 XXXXXGLTKALTFGYAQTANSLL-PTTIPYNGNDTIKPLNFNVDEAKAELAKSAF----P 377 + + G Q A+ P T PY N +++ ++ AKA LA++ + P Sbjct: 305 AINKDEIVHGVLLGLGQVAHGPFKPGTWPY--NPSVRDFGYDPARAKALLAEAGWHAVGP 362 Query: 378 NGFSTK--------LLVASGNSTRXXXXXXXXXXXXXXXXKIEIESVELAAFRERFF-AY 428 +G TK + GN R +++I +E A+ F Sbjct: 363 DGILTKDGKPFSFTIFTNQGNDQRLKTAQIIQRRLAKVGIEVKIRVLEWASLLTNFIDKR 422 Query: 429 DFAAMLNSGQADSPEANSILAFQTDPKGFSKSYWTHYTNDEVTKLLYEGQKTADGDGRAE 488 +F A++ G + + + + G + + + N EV +L+ EG+ T D + R Sbjct: 423 NFDALI-MGWTIPQDPDIFDVWHSSKTGPKELNFIGFKNAEVDRLIEEGRSTFDQEKRRR 481 Query: 489 IYSKLLQTLADEVPYIPLYYPDILIGARSSVQDLTVLPNG 528 Y ++ + LA E PY L+ PD L + + + P G Sbjct: 482 CYWRIQEILAQEQPYTFLFVPDALPVVNARFRGIEPAPAG 521 >ref|ZP_00029179.1| COG0747: ABC-type dipeptide transport system, periplasmic component [Burkholderia fungorum] Length = 520 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 114/459 (24%), Positives = 207/459 (45%), Gaps = 19/459 (4%) Query: 93 FESLVAFDSKGEIVDWLAKSHSISEDGLTYTFVLRDGLKFSNGTEVTAEDAVFSLNRHLK 152 ++ L FD ++V+ LA S+ S D YTF LR G+KF +GT+ A + +R Sbjct: 66 YQGLFGFDKDMKLVNVLADSYEASPDAKVYTFKLRHGVKFQDGTDFNAAAVKANFDRVTD 125 Query: 153 VGGPLE---ISAKVDTIKAQDKQTLVITLKEPYTPFISELSNFSNGILPNNFGGVTEAEF 209 L+ + +++ + D T+ ITLK P++ FI+ L++ S ++ + + Sbjct: 126 PANKLKRYNMFNRIEKTEVVDPYTVKITLKAPFSAFINVLAHPSAVMISPDALKKYGKDI 185 Query: 210 FKKPVGTGPFVVESWDPAGDLTFTKNPNYWQEGKPYIDKLVYKLIEDDSQAINQLKAGEV 269 PVGTGPF + WDPAGDLT K YW++G P +D + +K + D++ ++ GE Sbjct: 186 AFHPVGTGPFELVKWDPAGDLTVKKFAGYWKKGYPKVDAIDWKPVVDNNTRAALMRTGEA 245 Query: 270 NAIESLALQNANEIKNGTDTAVLTNGSWVTEQLFFNTLDEHFKDVHVXXXXXXXXXXXGL 329 + + + A ++++ ++ + S + + N + F + V L Sbjct: 246 DFAFQVPFEQAAQLQSSPKVDLIASPSIIQRYISLNVNQKPFDNPKVREALNYAVNKDAL 305 Query: 330 TKALTFGYAQTANSLLPTTIPYNGNDTIKPLNFNVDEAKAELAKSAFPNGFSTKLLVASG 389 TK GYA A+ ++P + Y + P ++ +A+A L ++ +PNGF T L A Sbjct: 306 TKVAFAGYATPADGVVPQGVDYAVK--LGPWPYDPAKARALLKEAGYPNGFETTLWSAYN 363 Query: 390 NSTRXXXXXXXXXXXXXXXXKIEIESVELAAFRERFFAYDFAAML-----------NSGQ 438 ST K ++E++E + + AA ++G+ Sbjct: 364 YSTAQKVIQFVQQQLAQVGIKAQVEALEAGQRVAKVESAQDAATAPVRMYYAGWSSSTGE 423 Query: 439 ADSPEANSILAFQTDPKGFSKSYWTHYTNDEVTKLLYEGQKTADGDGRAEIYSKLLQTLA 498 AD + + PK + +Y Y ND V L + +T D +AE+Y+ + + Sbjct: 424 ADWAITPLLASVSFPPKMVNTAY---YKNDAVDSDLKQALETTDRTKKAELYTDAQKRIW 480 Query: 499 DEVPYIPLYYPDILIGARSSVQDLTVLPNGSVRLEAVSI 537 + P+I L ++ + V P+GS + ++I Sbjct: 481 ADAPWIFLVKEKVVYARSKRLSGAYVAPDGSFNFDEIAI 519 >ref|NP_386926.1| PUTATIVE DIPEPTIDE-BINDING ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] emb|CAC47399.1| PUTATIVE DIPEPTIDE-BINDING ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] Length = 504 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 124/479 (25%), Positives = 213/479 (44%), Gaps = 12/479 (2%) Query: 61 GGTFVYGRPAAVTSFDLHNEITSNNAFAIDKVFESLVAFDSKGEIVD-WLAKSHSISEDG 119 G GR T+FD + + + VF+ LV D G ++ LA+S ++S+DG Sbjct: 27 AGILSIGRREDSTTFDPIKSAQNVDNWVFSNVFDVLVRVDKTGTKLEPGLAESWTLSDDG 86 Query: 120 LTYTFVLRDGLKFSNGTEVTAEDAVFSLNRHLKVGGPL--EISAKVDTIKAQDKQTLVIT 177 LTYTF +RD KFS+G+ +TAEDA FSL R G L + ++T +A D +TLV+ Sbjct: 87 LTYTFKIRDA-KFSDGSPITAEDAAFSLLRIRDHEGSLWSDSYKIIETAEAADPKTLVVK 145 Query: 178 LKEPYTPFISELSNFSNGILPNNFGGVTEAEFFKKPVGT-GPFVVESWDPAGDLTFTKNP 236 LK P PF+S L+ + +L E F + P + G F V+ W + KNP Sbjct: 146 LKTPSAPFLSTLALPNVSVLSKKAVEAGEDAFAELPTASSGAFTVKEWRRGDRVILEKNP 205 Query: 237 NYWQEGKPYIDKLVYKLIEDDSQAINQLKAGEVNAIESLALQNANEIKNGTDTAVLTNGS 296 N+WQ + +D + + + DD+ + ++AG+++ + E+K + V + S Sbjct: 206 NFWQADRVKLDGVEWISVPDDNTRMLNVQAGQLDTAIFVPFSRVEELKKDPNLTVHIDTS 265 Query: 297 WVTEQLFFNTLDEHFKDVHVXXXXXXXXXXXGLTKALTFGYAQTANSLLPTTIPYNGNDT 356 + L N V + +TFG ANS +P Y+ D Sbjct: 266 TREDHLLINHEHGMLAKKEVRQALDMAIDKKAIVDTVTFGIGTVANSYIPKGSLYH-YDA 324 Query: 357 IKPLNFNVDEAKAELAKSAFPNGFSTKLLVASGNSTRXXXXXXXXXXXXXXXXKIEIESV 416 ++ ++AKA LA++ + + +V +GN + ++ V Sbjct: 325 NYQYPYDPEKAKAMLAEAG-ASDLTLNYVVNAGNEVDEQIAVLLQQQFAKAGVTVNLQKV 383 Query: 417 ELAAFRERFFA--YDFAAMLNSGQADSPEANSILAFQTDPKGFSKSYWTHYTNDEVTKLL 474 + + + A YD + M + P+ + D + +Y T Y +++V +L+ Sbjct: 384 DASQSWDMLVAGDYDISVMYWTNDVLDPDQKTTFVLGHDT---NMNYMTRYNSEKVKELV 440 Query: 475 YEGQKTADGDGRAEIYSKLLQTLADEVPYIPLYYPDILIGARSSVQDLTVLPNGSVRLE 533 + D R +Y + +T D+V +I LYY L +R ++++ P G LE Sbjct: 441 AAARLELDPAKREAMYVDIQKTAKDDVHWIDLYYSPYLNVSRKNIENFYQNPLGRFFLE 499 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 708,269,648 Number of extensions: 28073460 Number of successful extensions: 52409 Number of sequences better than 1.0e-05: 1192 Number of HSP's gapped: 50778 Number of HSP's successfully gapped: 1192 Length of query: 539 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 408 Effective length of database: 401,559,609 Effective search space: 163836320472 Effective search space used: 163836320472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)