BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0007.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_794291.1| peptide ABC transporter, permease protein [Pseu... 218 2e-55 ref|ZP_00126255.1| COG0601: ABC-type dipeptide/oligopeptide/nick... 216 7e-55 ref|NP_386923.1| PUTATIVE DIPEPTIDE TRANSPORT SYSTEM PERMEASE AB... 205 1e-51 ref|NP_125836.1| dipeptide ABC transporter, dipeptide-binding pr... 196 5e-49 ref|ZP_00004309.1| COG0601: ABC-type dipeptide/oligopeptide/nick... 191 2e-47 >ref|NP_794291.1| peptide ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO57986.1| peptide ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 315 Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 164/303 (54%), Gaps = 1/303 (0%) Query: 26 IRALAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLWDQFLRFM 85 ++ L V+ + F ++R +PGDPA+++LG STP+AL ++ GLD P+W Q+L FM Sbjct: 14 LQLLPVLFGISLVTFILVRSIPGDPARILLGARSTPDALANIRAQYGLDQPMWTQYLYFM 73 Query: 86 NTLFTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXXXHKDKLL 145 LF QGD G S++ +LI R +K Sbjct: 74 KNLF-QGDMGKSLLYKIDVLKLIGTRLEPTLFLVIGSVLLALLIAVPLATVAARNKGSWG 132 Query: 146 DHLIRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLALPAVTVAFS 205 D+LIR+F LGMP FW+G++LILLFSVRL WFPV G G W LH + LP +T+A + Sbjct: 133 DNLIRVFTTTGLGMPAFWLGIMLILLFSVRLDWFPVSGYGSDWLDKLHHMVLPCLTIALA 192 Query: 206 QIPTLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLGVNISYLI 265 LVR+LRA ML L++D V RA + + +HVL NS +P++ LL VNI +LI Sbjct: 193 LSAVLVRNLRASMLMELQADHVTAARARGVSEGALFRRHVLPNSLVPSINLLAVNIGWLI 252 Query: 266 GGTLVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXXXXXXXDPRT 325 GT+V+E ++ I GIG LL I RD+ V+QG+A+ A DPR Sbjct: 253 SGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 312 Query: 326 KGK 328 K Sbjct: 313 NIK 315 >ref|ZP_00126255.1| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Pseudomonas syringae pv. syringae B728a] Length = 350 Score = 216 bits (549), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 164/303 (54%), Gaps = 1/303 (0%) Query: 26 IRALAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLWDQFLRFM 85 ++ L V+ + F ++R +PGDPA+M+LG STP+AL ++ GLD PLW Q++ FM Sbjct: 49 LQLLPVLFGISLVTFILVRSIPGDPARMLLGSRSTPQALANIRAQYGLDEPLWTQYVYFM 108 Query: 86 NTLFTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXXXHKDKLL 145 L QGD G S++ +LI+ R +K Sbjct: 109 KNL-VQGDMGKSLLYKIDVLKLISTRIEPTVFLVSGSVLLALLIAVPLATLAARNKGSWS 167 Query: 146 DHLIRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLALPAVTVAFS 205 D+LIR+F LGMP FW+G++LILLFSV+LGWFPV G G W H L LP +T+A + Sbjct: 168 DNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWFPVSGYGSDWLDKAHHLVLPCLTIALA 227 Query: 206 QIPTLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLGVNISYLI 265 L+R+LRA ML L++D V RA + + +HVL NS +P++ LL VNI +LI Sbjct: 228 LSAVLIRNLRASMLVELQADHVTAARARGLSEGALFRRHVLPNSLVPSINLLAVNIGWLI 287 Query: 266 GGTLVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXXXXXXXDPRT 325 GT+V+E ++ I GIG LL I RD+ V+QG+A+ A DPR Sbjct: 288 SGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVATVAIDPRV 347 Query: 326 KGK 328 K Sbjct: 348 NIK 350 >ref|NP_386923.1| PUTATIVE DIPEPTIDE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] emb|CAC47396.1| PUTATIVE DIPEPTIDE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] Length = 312 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 111/298 (37%), Positives = 160/298 (53%), Gaps = 1/298 (0%) Query: 29 LAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLWDQFLRFMNTL 88 L VI + F ++R++PGDPA+ +LG +TP A+ + GLD P+W Q+ F+ L Sbjct: 15 LPVIFGISIITFILVRLIPGDPARNLLGARATPSAIAKIRAQYGLDEPMWQQYFYFLKNL 74 Query: 89 FTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXXXHKDKLLDHL 148 G+ G SI+ +LIA R + K DH+ Sbjct: 75 -ADGEMGKSILYKIDVLKLIATRVEPTIALVLSSVVLAVLIAVPMAALAARNSGKAPDHI 133 Query: 149 IRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLALPAVTVAFSQIP 208 +R+ +G P FW+GL+L++LFSV+L PV G G + L L LP++TVA S Sbjct: 134 VRVVSTFGIGFPPFWLGLMLMILFSVKLDVLPVSGYGATFGDKLAHLILPSLTVALSLST 193 Query: 209 TLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLGVNISYLIGGT 268 LVRSLRA M+E L+SD RA +P R++ ++HV+ NS +PT+ LL VNI +LIGGT Sbjct: 194 VLVRSLRAAMIESLKSDVATAARARGMPERIVFWRHVVPNSLVPTINLLAVNIGWLIGGT 253 Query: 269 LVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXXXXXXXDPRTK 326 +VVE V+ + G+G LL +I RD+ V+QG+A+ A DPR K Sbjct: 254 VVVESVFALPGMGQLLVRAIFSRDYMVVQGVAMVFACATVLVNFIADIVTVAVDPRVK 311 >ref|NP_125836.1| dipeptide ABC transporter, dipeptide-binding protein [Pyrococcus abyssi] pir||D75202 dipeptide abc transporter, dipeptide-binding protein PAB0092 - Pyrococcus abyssi (strain Orsay) emb|CAB49067.1| Binding protein-dependent transport system, inner membrane component [Pyrococcus abyssi] Length = 310 Score = 196 bits (499), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 104/310 (33%), Positives = 166/310 (53%), Gaps = 6/310 (1%) Query: 17 SRKWLVIALIRALAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLP 76 ++W++ ++ L I V F I+ ++PGDPA+ +LGE++T E L H LGLD P Sbjct: 2 KKEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPARYLLGEFATEEQLAKFRHQLGLDRP 61 Query: 77 LWDQFLRFMNTLFTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXX 136 L+ Q++ +M+ + +GD G S++ G ELIA R Sbjct: 62 LYIQYIDWMSKVL-RGDFGTSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFGML 120 Query: 137 XXXHKDKLLDHLIRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLA 196 +K L D+++ + MP FW+G+LLIL+F V+LG P+ G G+ W L Sbjct: 121 AAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD-W----RHLI 175 Query: 197 LPAVTVAFSQIPTLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLML 256 LP++T+ Q+ + R RA ML+VLE D+++T RA +P R++++KH LRN+ +P + Sbjct: 176 LPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVVYKHALRNALIPLVTY 235 Query: 257 LGVNISYLIGGTLVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXX 316 + + I +L GG +V E V+G G+G+LL +I +RD+PV+Q I L Sbjct: 236 MFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVLIIGVLTVIANFLADI 295 Query: 317 XXXXXDPRTK 326 DPR + Sbjct: 296 TYTIIDPRVR 305 >ref|ZP_00004309.1| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Rhodobacter sphaeroides] Length = 312 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 107/298 (35%), Positives = 152/298 (51%), Gaps = 1/298 (0%) Query: 29 LAVILCVMTAVFFIIRIVPGDPAKMILGEYSTPEALESMHHALGLDLPLWDQFLRFMNTL 88 L V+ + F ++R++PGDPA+++LG +TP AL + GLD P+W Q+L F+ L Sbjct: 15 LPVLFGISVITFVLVRLIPGDPARILLGTRATPTALARIRAQYGLDEPMWAQYLYFLKNL 74 Query: 89 FTQGDTGNSIITGTSARELIAQRAPXXXXXXXXXXXXXXXXXXXXXXXXXXHKDKLLDHL 148 G+ G S + LIA R + + D Sbjct: 75 -ASGEMGRSTLYKIDVLPLIATRIEPTLALVTMGVLLSLAIAVPFAAISARRQGRAADQA 133 Query: 149 IRIFPAITLGMPIFWVGLLLILLFSVRLGWFPVGGVGEGWSGTLHSLALPAVTVAFSQIP 208 +R+ + +G P FW+GL+LILLFSV LGW PV G GE + L LP +TVA S Sbjct: 134 VRVVSTLGIGFPPFWLGLVLILLFSVTLGWLPVSGYGETLGEKISHLILPGLTVALSLSA 193 Query: 209 TLVRSLRAQMLEVLESDFVVTLRAARIPNRVILFKHVLRNSALPTLMLLGVNISYLIGGT 268 L RSLRA M+ + SD RA + + ++HV+ N+ +PT+ LL VNI +LIGGT Sbjct: 194 VLTRSLRAGMIAGIHSDVATAARARGLSENAVFWRHVVPNALVPTVNLLAVNIGWLIGGT 253 Query: 269 LVVEQVYGIKGIGSLLFTSISKRDFPVIQGIALYCAXXXXXXXXXXXXXXXXXDPRTK 326 +VVE V+ + G+G LL I RD+ V+QG+A+ A DPR K Sbjct: 254 VVVESVFALPGMGQLLVRGIFSRDYMVVQGVAMTFAVATVLVNFLADIVTVALDPRVK 311 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 389,779,438 Number of extensions: 13977619 Number of successful extensions: 52083 Number of sequences better than 1.0e-05: 1288 Number of HSP's gapped: 50262 Number of HSP's successfully gapped: 1302 Length of query: 329 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 203 Effective length of database: 415,135,104 Effective search space: 84272426112 Effective search space used: 84272426112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)