BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0006.p (279 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAA94701.1| dipeptide transporter DppC homolog [Ochrobactrum... 220 3e-56 ref|ZP_00004308.1| COG1173: ABC-type dipeptide/oligopeptide/nick... 204 1e-51 ref|NP_794290.1| peptide ABC transporter, permease protein [Pseu... 201 1e-50 ref|ZP_00126256.1| COG1173: ABC-type dipeptide/oligopeptide/nick... 201 2e-50 ref|NP_756931.1| Hypothetical ABC transporter permease protein y... 196 7e-49 >dbj|BAA94701.1| dipeptide transporter DppC homolog [Ochrobactrum anthropi] Length = 291 Score = 220 bits (560), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 104/261 (39%), Positives = 167/261 (63%), Gaps = 1/261 (0%) Query: 13 RIWNTPSLLVGTLMFLVLIILAVFIPYLSPYSPTEQNLSAFLQPPSAAHWLGTDQLGRDL 72 R W +P L +G+ + +L ++A+F P+++PY P Q+ A L PPS H GTD LGRD+ Sbjct: 21 RSW-SPPLKIGSAIMALLGLVAIFAPFIAPYDPNYQDFEAILVPPSLKHLFGTDNLGRDV 79 Query: 73 FTRLIYAARTDLKIMVLAEIIPFCTGIFLGMLAGYYGKWLDAAISLLTDTLIAFPFYLIV 132 F+R+++ AR DL + L +P G+ +G AGY G DA + + D +AFPF +++ Sbjct: 80 FSRVVFGARIDLVVGFLLTYVPMIYGVLIGAYAGYIGGRFDATLMRIIDVAMAFPFLVLI 139 Query: 133 IIVAFASGAGERGIYITFMLVGWIVFARVVRGLSASFRKQEWVASAQTLGLPGVRIILRH 192 +++ G G + IYI +V W ++AR+ R R ++++ +A+ LG P RII H Sbjct: 140 VVILAILGPGIQNIYIAIFIVAWTMYARLARAEMMVERTKDYMVAAKVLGFPRSRIIFLH 199 Query: 193 LLPNVLPQAVVVLMTDMIGLLVAIVTLGYLGIGIAPPTPDWGTMISDGQPFITTAWWLSA 252 LPNV+ ++V +D + +V + L ++G+GI PP P+WG+MI++G+ F+ AWW++ Sbjct: 200 GLPNVINSSIVFSTSDFVLNIVLVSGLSFIGLGIQPPAPEWGSMIAEGRDFMRQAWWIAV 259 Query: 253 VPGFAVVYTGIALSLVGDGLA 273 +PGFA+V TG+AL L+GDGLA Sbjct: 260 LPGFAIVLTGMALVLIGDGLA 280 >ref|ZP_00004308.1| COG1173: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Rhodobacter sphaeroides] Length = 275 Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 102/249 (40%), Positives = 156/249 (62%) Query: 18 PSLLVGTLMFLVLIILAVFIPYLSPYSPTEQNLSAFLQPPSAAHWLGTDQLGRDLFTRLI 77 P L +GT + L ++ A+ P+++P+ P Q+ S LQPPS AH GTD GRD+ +R+I Sbjct: 13 PMLAIGTALLLAFLLAALLAPWIAPFDPIAQDGSIRLQPPSLAHPFGTDNFGRDVLSRVI 72 Query: 78 YAARTDLKIMVLAEIIPFCTGIFLGMLAGYYGKWLDAAISLLTDTLIAFPFYLIVIIVAF 137 + AR DL+I VL + PF G +G LAG++G W+DA L D ++AFPF ++++ + Sbjct: 73 WGARIDLQIAVLGVLFPFLIGTAVGTLAGFFGGWIDALFMRLIDVILAFPFLVLMLSIIA 132 Query: 138 ASGAGERGIYITFMLVGWIVFARVVRGLSASFRKQEWVASAQTLGLPGVRIILRHLLPNV 197 G G YI LVGW+ +AR++R + Q++ +AQ+LG RI+ RHLLPN Sbjct: 133 ILGPGLTSFYIAMALVGWVSYARLIRAQILVLKTQDFAVAAQSLGFSRTRIMFRHLLPNA 192 Query: 198 LPQAVVVLMTDMIGLLVAIVTLGYLGIGIAPPTPDWGTMISDGQPFITTAWWLSAVPGFA 257 L ++V +M+D + +L+ + YLG+G+ PP +WG M+++GQ FITTAWW++ PG A Sbjct: 193 LAGSLVFVMSDAVLVLLNGAAISYLGLGVQPPLAEWGVMVAEGQAFITTAWWITLFPGLA 252 Query: 258 VVYTGIALS 266 +V S Sbjct: 253 IVTLAFGFS 261 >ref|NP_794290.1| peptide ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO57985.1| peptide ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 287 Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 95/244 (38%), Positives = 152/244 (62%) Query: 36 FIPYLSPYSPTEQNLSAFLQPPSAAHWLGTDQLGRDLFTRLIYAARTDLKIMVLAEIIPF 95 F P+L+PY P QN L P AH GTD GRD+ +R+I+AAR DL+I V+ + PF Sbjct: 43 FAPWLAPYDPIYQNTELRLLAPHLAHPFGTDNFGRDILSRVIWAARVDLQICVIGVVFPF 102 Query: 96 CTGIFLGMLAGYYGKWLDAAISLLTDTLIAFPFYLIVIIVAFASGAGERGIYITFMLVGW 155 G F+G L+GY G D L D ++AFPF ++++ + G G YI LVGW Sbjct: 103 MIGTFVGALSGYIGGRFDNLCMRLIDIVLAFPFLVLMLAIIAILGPGLSSFYIAMALVGW 162 Query: 156 IVFARVVRGLSASFRKQEWVASAQTLGLPGVRIILRHLLPNVLPQAVVVLMTDMIGLLVA 215 + +AR++R ++ ++ +A++LG +RI+ RHLLPN + ++V M+D + +L++ Sbjct: 163 VSYARLIRSQILVLKESDFALAAKSLGFGHLRILFRHLLPNAMFGSIVFSMSDAVLVLLS 222 Query: 216 IVTLGYLGIGIAPPTPDWGTMISDGQPFITTAWWLSAVPGFAVVYTGIALSLVGDGLADI 275 ++ YLG+G+ PP +WGTM+++GQ F+T+AWW+ PG A+V + SL+ DG+A+ Sbjct: 223 GASVSYLGLGVQPPLAEWGTMVAEGQAFLTSAWWICTFPGLAIVTLAMGFSLLADGVAET 282 Query: 276 WRKK 279 ++ Sbjct: 283 LGER 286 >ref|ZP_00126256.1| COG1173: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Pseudomonas syringae pv. syringae B728a] Length = 287 Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 95/246 (38%), Positives = 154/246 (62%) Query: 34 AVFIPYLSPYSPTEQNLSAFLQPPSAAHWLGTDQLGRDLFTRLIYAARTDLKIMVLAEII 93 A+F P+L+PY P QN + P AH GTD GRD+ +R+I+AAR DL+I V+ I Sbjct: 41 ALFAPWLAPYDPIYQNTELRMLAPHLAHPFGTDNFGRDILSRVIWAARVDLQICVIGVIF 100 Query: 94 PFCTGIFLGMLAGYYGKWLDAAISLLTDTLIAFPFYLIVIIVAFASGAGERGIYITFMLV 153 PF G F+G L+GY G D + D ++AFPF ++++ + G G YI LV Sbjct: 101 PFMIGTFVGALSGYIGGRFDNLCMRVIDIVLAFPFLVLMLAIIAILGPGLGSFYIAMALV 160 Query: 154 GWIVFARVVRGLSASFRKQEWVASAQTLGLPGVRIILRHLLPNVLPQAVVVLMTDMIGLL 213 GW+ +AR++R ++ ++ +A++LG +RI+ RHLLPN + ++V M+D + +L Sbjct: 161 GWVSYARLIRSQILVLKESDFALAAKSLGFGHLRILFRHLLPNAMFGSIVFSMSDAVLVL 220 Query: 214 VAIVTLGYLGIGIAPPTPDWGTMISDGQPFITTAWWLSAVPGFAVVYTGIALSLVGDGLA 273 ++ ++ YLG+G+ PP +WGTM+++GQ F+T+AWW+ PG A+V + SL+ DG+A Sbjct: 221 LSGASVSYLGLGVQPPMAEWGTMVAEGQAFLTSAWWICTFPGLAIVTLAMGFSLLADGVA 280 Query: 274 DIWRKK 279 + ++ Sbjct: 281 ETLGER 286 >ref|NP_756931.1| Hypothetical ABC transporter permease protein yddQ [Escherichia coli CFT073] gb|AAN83505.1| Hypothetical ABC transporter permease protein yddQ [Escherichia coli CFT073] Length = 277 Score = 196 bits (497), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 100/265 (37%), Positives = 160/265 (60%) Query: 11 LKRIWNTPSLLVGTLMFLVLIILAVFIPYLSPYSPTEQNLSAFLQPPSAAHWLGTDQLGR 70 L+R+ ++P+ G ++ L+L+++A+F P+L+P+ P Q+ +A LQ PS HWLGTD GR Sbjct: 7 LRRLRHSPAAFCGLIIILLLMLIALFAPWLAPHDPNWQDAAARLQAPSRQHWLGTDSYGR 66 Query: 71 DLFTRLIYAARTDLKIMVLAEIIPFCTGIFLGMLAGYYGKWLDAAISLLTDTLIAFPFYL 130 DL +RLIY +R L ++ L II G+ +G+LAGYYG WL+ + TD +++ P + Sbjct: 67 DLLSRLIYGSRPALGLVALVTIITLPVGLLIGILAGYYGGWLERVLMRFTDVVMSMPRLI 126 Query: 131 IVIIVAFASGAGERGIYITFMLVGWIVFARVVRGLSASFRKQEWVASAQTLGLPGVRIIL 190 + G G + L W +AR R R +++A+A+ +G+ G R++ Sbjct: 127 LAFAFVAMLGPGLVNGALALALTTWPAYARQARSEIQRLRHSDYLAAAEMMGIRGRRLLA 186 Query: 191 RHLLPNVLPQAVVVLMTDMIGLLVAIVTLGYLGIGIAPPTPDWGTMISDGQPFITTAWWL 250 H+LP LP A+V L D+ G+++A LG+LG+G PP +WG MI+DG I WW+ Sbjct: 187 GHILPLCLPSAIVRLALDLAGIILAAAGLGFLGLGARPPMAEWGAMIADGMQVIFDQWWI 246 Query: 251 SAVPGFAVVYTGIALSLVGDGLADI 275 +A PG ++ +A +L+GDGL D+ Sbjct: 247 AAAPGAIILIASLAFNLLGDGLRDV 271 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.144 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 414,209,145 Number of extensions: 16781903 Number of successful extensions: 66014 Number of sequences better than 1.0e-05: 1490 Number of HSP's gapped: 64651 Number of HSP's successfully gapped: 1498 Length of query: 279 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 155 Effective length of database: 420,565,302 Effective search space: 65187621810 Effective search space used: 65187621810 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)