BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0005.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_761777.1| ABC-type dipeptide/oligopeptide/nickel transpor... 177 2e-43 ref|NP_541716.1| OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD... 176 3e-43 ref|NP_699721.1| ABC transporter, ATP-binding protein [Brucella ... 176 4e-43 emb|CAA61525.1| oligopeptidepermease [Streptococcus pyogenes] 174 2e-42 ref|NP_268642.1| oligopeptidepermease (ATP-binding protein) [Str... 174 2e-42 >ref|NP_761777.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Vibrio vulnificus CMCP6] ref|NP_934103.1| oligopeptide ABC transporter, ATP-binding protein [Vibrio vulnificus YJ016] gb|AAO11304.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Vibrio vulnificus CMCP6] dbj|BAC94074.1| oligopeptide ABC transporter, ATP-binding protein [Vibrio vulnificus YJ016] Length = 288 Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 104/262 (39%), Positives = 147/262 (56%), Gaps = 28/262 (10%) Query: 2 MSTQPVLEIEALSLAAKSNEPLV---HNVSFXXXXXXXXXXXXXXXXXXXXTLRAILGLL 58 M+++ VL ++ L ++++ V H VSF T +I+GLL Sbjct: 1 MNSEVVLSVKNLETEFQTDDGAVQVLHGVSFDVKKGRTLGLVGESGCGKSVTSMSIMGLL 60 Query: 59 PRGVTQTGGVIKSEV---------------------SSAMVFQDPRGALDPLCPVVKQLA 97 P+ G VI E+ +++FQDP AL+P+ V KQL Sbjct: 61 PK---PYGRVIGGEILYRGKDLVTLPADEMYAMRGDRISIIFQDPMTALNPVHTVGKQLM 117 Query: 98 EVV-YYRQQVSRKASRRIALELLERLGLPEALKRSDRYPSQLSGGQCQRIVIAMALACKP 156 EV+ +R + RKA R ALE+L+++ +P KR D YP LSGG QR++IAMALACKP Sbjct: 118 EVLKLHRPDLDRKARREQALEMLKKVRIPMPEKRLDEYPHNLSGGMRQRVMIAMALACKP 177 Query: 157 GILLCDEPTTALDVTVQRQIIETITSLQQELGFAMVFVTHNLAIAANLCSRLYVMKAGEI 216 IL+CDEPTTALDVTVQ I+E I LQ+E G A++F+TH+L + A +C + VM G+I Sbjct: 178 EILICDEPTTALDVTVQASILELINELQEETGMAVIFITHDLGVVAEICDDVAVMYGGKI 237 Query: 217 VEHGDTIDLLQHPSDPYTQMLI 238 VE+ D +L P PYT+ L+ Sbjct: 238 VEYADVFELFDAPKHPYTERLM 259 >ref|NP_541716.1| OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD [Brucella melitensis] pir||AI3601 oligopeptide transport ATP-binding protein oppD BMEII0738 [imported] - Brucella melitensis (strain 16M) gb|AAL53980.1| OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD [Brucella melitensis 16M] Length = 551 Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 94/207 (45%), Positives = 134/207 (64%), Gaps = 16/207 (7%) Query: 50 TLRAILGLLPRGVTQTG----------GVIKSEVSS------AMVFQDPRGALDPLCPVV 93 T A++GLL + TG G+ + E++ M+FQ+P +LDPL + Sbjct: 67 TTMAMMGLLAQNGKATGQALYRGQDLIGLSEKELNKIRGAKITMIFQEPMTSLDPLYRIG 126 Query: 94 KQLAEVVYYRQQVSRKASRRIALELLERLGLPEALKRSDRYPSQLSGGQCQRIVIAMALA 153 QLAE + Y + +S+K +R LELL+ +G+PE +R D YP +LSGGQ QR++IAMALA Sbjct: 127 DQLAEPLRYHRGLSKKDARPRILELLKLVGIPEPERRIDSYPYELSGGQRQRVMIAMALA 186 Query: 154 CKPGILLCDEPTTALDVTVQRQIIETITSLQQELGFAMVFVTHNLAIAANLCSRLYVMKA 213 +P IL+ DEPTTALDVT+Q QI++ + LQ+ LG A+VF+TH+L I R+YVM++ Sbjct: 187 NEPDILIADEPTTALDVTIQAQILDLLADLQKRLGMAVVFITHDLGIVRRFADRVYVMRS 246 Query: 214 GEIVEHGDTIDLLQHPSDPYTQMLIDS 240 GE+VE G T L P PYT+ML+D+ Sbjct: 247 GEVVETGVTEKLFTAPEHPYTRMLLDA 273 Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 3/167 (1%) Query: 77 MVFQDPRGALDPLCPVVKQLAE-VVYYRQQVSRKASRRIALELLERLGLPEALKRSDRYP 135 +VFQDP G+L P + + + E ++ + Q+S K R A E L +G+ A++ +RYP Sbjct: 378 LVFQDPFGSLSPRMTIGRIITEGLLIHEPQLSAKDRDRRAQEALREVGMDPAMR--NRYP 435 Query: 136 SQLSGGQCQRIVIAMALACKPGILLCDEPTTALDVTVQRQIIETITSLQQELGFAMVFVT 195 + SGGQ QRI IA + KP +++ DEPT+ALD +VQ+QI+ + LQ++ G + +F++ Sbjct: 436 HEFSGGQRQRIAIARTMILKPRVIVLDEPTSALDRSVQKQIVTLLRDLQKDHGLSYLFIS 495 Query: 196 HNLAIAANLCSRLYVMKAGEIVEHGDTIDLLQHPSDPYTQMLIDSVL 242 H++A+ + + VMK G+IVE GDT + HP + YT+ L+ + L Sbjct: 496 HDMAVVRAVSDYVIVMKNGKIVEQGDTEQVFDHPREEYTKALMAAAL 542 >ref|NP_699721.1| ABC transporter, ATP-binding protein [Brucella suis 1330] gb|AAN33726.1| ABC transporter, ATP-binding protein [Brucella suis 1330] Length = 536 Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 94/207 (45%), Positives = 134/207 (64%), Gaps = 16/207 (7%) Query: 50 TLRAILGLLPRGVTQTG----------GVIKSEVSS------AMVFQDPRGALDPLCPVV 93 T A++GLL + TG G+ + E++ M+FQ+P +LDPL + Sbjct: 52 TTMAMMGLLAQNGKATGQALYRGQDLIGLSEKELNKIRGAKITMIFQEPMTSLDPLYRIG 111 Query: 94 KQLAEVVYYRQQVSRKASRRIALELLERLGLPEALKRSDRYPSQLSGGQCQRIVIAMALA 153 QLAE + Y + +S+K +R LELL+ +G+PE +R D YP +LSGGQ QR++IAMALA Sbjct: 112 DQLAEPLRYHRGLSKKDARPRILELLKLVGIPEPERRIDSYPYELSGGQRQRVMIAMALA 171 Query: 154 CKPGILLCDEPTTALDVTVQRQIIETITSLQQELGFAMVFVTHNLAIAANLCSRLYVMKA 213 +P IL+ DEPTTALDVT+Q QI++ + LQ+ LG A+VF+TH+L I R+YVM++ Sbjct: 172 NEPDILIADEPTTALDVTIQAQILDLLADLQKRLGMAVVFITHDLGIVRRFADRVYVMRS 231 Query: 214 GEIVEHGDTIDLLQHPSDPYTQMLIDS 240 GE+VE G T L P PYT+ML+D+ Sbjct: 232 GEVVETGVTEKLFTAPEHPYTRMLLDA 258 Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 3/167 (1%) Query: 77 MVFQDPRGALDPLCPVVKQLAE-VVYYRQQVSRKASRRIALELLERLGLPEALKRSDRYP 135 +VFQDP G+L P + + + E ++ + Q+S K R A E L +G+ A++ +RYP Sbjct: 363 LVFQDPFGSLSPRMTIGRIITEGLLIHEPQLSAKDRDRRAQEALREVGMDPAMR--NRYP 420 Query: 136 SQLSGGQCQRIVIAMALACKPGILLCDEPTTALDVTVQRQIIETITSLQQELGFAMVFVT 195 + SGGQ QRI IA + KP +++ DEPT+ALD +VQ+QI+ + LQ++ G + +F++ Sbjct: 421 HEFSGGQRQRIAIARTMILKPRVIMLDEPTSALDRSVQKQIVTLLRDLQKDHGLSYLFIS 480 Query: 196 HNLAIAANLCSRLYVMKAGEIVEHGDTIDLLQHPSDPYTQMLIDSVL 242 H++A+ + + VMK G+IVE GDT + HP + YT+ L+ + L Sbjct: 481 HDMAVVRAVSDYVIVMKNGKIVEQGDTEQVFDHPREEYTKALMAAAL 527 >emb|CAA61525.1| oligopeptidepermease [Streptococcus pyogenes] Length = 356 Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 81/172 (47%), Positives = 118/172 (68%), Gaps = 3/172 (1%) Query: 76 AMVFQDPRGALDPLCPVVKQLAEVVYYRQQVSRKASRRIALELLERLGLPEALKRSDRYP 135 A +FQDP +L P+ + Q+ EV+ Q+VS ++ +AL+ + ++G+P A KR + YP Sbjct: 98 ATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYP 157 Query: 136 SQLSGGQCQRIVIAMALACKPGILLCDEPTTALDVTVQRQIIETITSLQQELGFAMVFVT 195 + SGG QRIVIA+ALAC+P IL+CDEPTTALDVT+Q QI+E + SLQ+E F ++F+T Sbjct: 158 FEYSGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFIT 217 Query: 196 HNLAIAANLCSRLYVMKAGEIVEHGDTIDLLQHPSDPYTQMLIDSVLPLPEL 247 H+L + A++ ++ VM AGEIVE G ++ P PYT L+ S LP+L Sbjct: 218 HDLGVVASIADKVAVMYAGEIVEFGTVEEIFYDPRHPYTWSLLSS---LPQL 266 >ref|NP_268642.1| oligopeptidepermease (ATP-binding protein) [Streptococcus pyogenes] gb|AAK33363.1| oligopeptidepermease (ATP-binding protein) [Streptococcus pyogenes M1 GAS] Length = 356 Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 81/172 (47%), Positives = 118/172 (68%), Gaps = 3/172 (1%) Query: 76 AMVFQDPRGALDPLCPVVKQLAEVVYYRQQVSRKASRRIALELLERLGLPEALKRSDRYP 135 A +FQDP +L P+ + Q+ EV+ Q+VS ++ +AL+ + ++G+P A KR + YP Sbjct: 98 ATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYP 157 Query: 136 SQLSGGQCQRIVIAMALACKPGILLCDEPTTALDVTVQRQIIETITSLQQELGFAMVFVT 195 + SGG QRIVIA+ALAC+P IL+CDEPTTALDVT+Q QI+E + SLQ+E F ++F+T Sbjct: 158 FEYSGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFIT 217 Query: 196 HNLAIAANLCSRLYVMKAGEIVEHGDTIDLLQHPSDPYTQMLIDSVLPLPEL 247 H+L + A++ ++ VM AGEIVE G ++ P PYT L+ S LP+L Sbjct: 218 HDLGVVASIADKVAVMYAGEIVEFGTVEEIFYDPRHPYTWSLLSS---LPQL 266 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 305,163,285 Number of extensions: 10141563 Number of successful extensions: 55170 Number of sequences better than 1.0e-05: 13259 Number of HSP's gapped: 53479 Number of HSP's successfully gapped: 13751 Length of query: 254 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 131 Effective length of database: 423,280,401 Effective search space: 55449732531 Effective search space used: 55449732531 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)