BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0472.0004.p (242 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_760036.1| Peptide ABC transporter, ATP-binding protein [V... 234 2e-60 gb|EAJ84433.1| unknown [environmental sequence] 233 3e-60 gb|EAI64576.1| unknown [environmental sequence] 232 5e-60 ref|NP_796426.1| peptide ABC transporter, ATP-binding protein [V... 231 1e-59 ref|NP_886453.1| probable ABC transporter, ATP-binding protein [... 231 1e-59 >ref|NP_760036.1| Peptide ABC transporter, ATP-binding protein [Vibrio vulnificus CMCP6] ref|NP_932836.1| Peptide ABC transporter, ATP-binding protein [Vibrio vulnificus YJ016] gb|AAO09563.1| Peptide ABC transporter, ATP-binding protein [Vibrio vulnificus CMCP6] dbj|BAC92807.1| Peptide ABC transporter, ATP-binding protein [Vibrio vulnificus YJ016] Length = 571 Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 121/232 (52%), Positives = 159/232 (68%), Gaps = 5/232 (2%) Query: 2 DDISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDGGKILLGSQEL----RKKRSREQ 57 +++S Q+ E T GLVGESGSGKST+ARVIAGL AP+ GK+ +L +K R Sbjct: 330 NNVSFQVHEGETFGLVGESGSGKSTIARVIAGLYAPNSGKVTFEGIDLTALTSEKARRPL 389 Query: 58 HKKIQMIFQNPDASLNPKHSIRQILSEALLFHKLVH-RPQVEQRCKELLARVHLEAKALD 116 +++QM+FQNP S+NP+ I I++E + FHKL + + Q +LL V L A Sbjct: 390 RRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTNSEAETRQIVNDLLEHVGLGRMAGV 449 Query: 117 RYPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTELNLTML 176 +YPHEFSGGQRQRI+IARAL+ P LLI DEPTSALDVSVQ +L L K L++ELNLTML Sbjct: 450 KYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQSELNLTML 509 Query: 177 FISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPKM 228 FISHDL VI + D V VM+ G L+E + +Q F P+H+YS+ L+S +P+ Sbjct: 510 FISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFRSPQHEYSKHLISLMPEF 561 Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 95/238 (39%), Positives = 140/238 (58%), Gaps = 18/238 (7%) Query: 4 ISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAP-----------DGGKIL-LGSQELRK 51 +S +E +G+VGESG+GKST+ ++ L++P DG KI L + +RK Sbjct: 26 LSFNIERGEIVGVVGESGAGKSTVGNAVSDLLSPPGRIASGDVFLDGEKISGLSPEAMRK 85 Query: 52 KRSREQHKKIQMIFQNPDASLNPKHSIRQILSEALLFHKLVHRPQVEQRCKELLARVHLE 111 R KI IFQ+P SLNP ++ Q L E + + V + R L+ +V + Sbjct: 86 VRG----SKIGFIFQDPMTSLNPLFTVEQQLKETIHANMNVSDEEAYTRALSLMKQVGIP 141 Query: 112 A--KALDRYPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKT 169 L +YPH+FSGG RQR+ IA AL+ EP L+IADEPT+ALDVS+Q +L L + L Sbjct: 142 QPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTALDVSIQDQILNLIRELCI 201 Query: 170 ELNLTMLFISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPK 227 + N+ + ++HD+GV+ ++D VAVM +G LVE + P+H Y+R L+SAVP+ Sbjct: 202 KHNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLGNPDHPYTRSLISAVPR 259 >gb|EAJ84433.1| unknown [environmental sequence] Length = 561 Score = 233 bits (594), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 109/229 (47%), Positives = 158/229 (68%), Gaps = 1/229 (0%) Query: 1 LDDISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDGGKILLGSQELRKKRSREQHKK 60 LD++S + E + GLVGESGSGKST+A++I LI P G++ + L +K + + + Sbjct: 329 LDNVSFNIFEGESFGLVGESGSGKSTIAKIITNLIKPTSGEVFYENISLNQKNNNKFRGQ 388 Query: 61 IQMIFQNPDASLNPKHSIRQILSEAL-LFHKLVHRPQVEQRCKELLARVHLEAKALDRYP 119 IQMIFQ+P +SLNP+ ++ I++E + F K + + +E +L+ V + ++LDRYP Sbjct: 389 IQMIFQDPYSSLNPRFKVKNIIAEPIKFFQKNLDKKTIENNVNDLIDIVGMTRQSLDRYP 448 Query: 120 HEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTELNLTMLFIS 179 HEFSGGQRQRI+IARAL+ P LLI DEPTSALDVS+Q +L L K L+ +LNLT+LFIS Sbjct: 449 HEFSGGQRQRISIARALATRPRLLICDEPTSALDVSIQAQILNLLKDLQEQLNLTILFIS 508 Query: 180 HDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPKM 228 HDL VI + D +AV++ G L E + + F P H Y++EL++ +PK+ Sbjct: 509 HDLPVIRQMCDRIAVLKNGNLCEIENTEILFNNPSHQYTKELINLMPKI 557 Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 98/233 (42%), Positives = 139/233 (59%), Gaps = 9/233 (3%) Query: 3 DISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDG----GKILLGSQELRKKRS---R 55 D+ LE LG+VGESGSGKST+A I LI P G G I + ++E+ + Sbjct: 25 DVEFYLERGEILGIVGESGSGKSTIANAIINLIDPPGEITDGSIKIDNEEICNNEEIIQK 84 Query: 56 EQHKKIQMIFQNPDASLNPKHSIRQILSEALLFHKLVHRPQVEQRCKELLARVHLE--AK 113 + KKI +FQ+P SLNP I+ L E + H ++ Q QR +LL V +E K Sbjct: 85 ARGKKIGFVFQDPQTSLNPLFKIKDQLIETIQTHLKLNYDQALQRSIQLLNEVGIEDAEK 144 Query: 114 ALDRYPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTELNL 173 ++ YPH+FSGG RQR+ IA A+S EP L+IADEPT+ALDVS+Q +L+L K L + NL Sbjct: 145 RIEDYPHQFSGGMRQRVVIALAISCEPDLIIADEPTTALDVSIQYQILQLLKDLTKKRNL 204 Query: 174 TMLFISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVP 226 ++ I+HD+GVI ++ V +MR G +VE T P+ + + L+ +VP Sbjct: 205 GVIIITHDMGVIAETTNKVIIMRNGVIVEYGLTKDVLTNPKSNEGKSLIISVP 257 >gb|EAI64576.1| unknown [environmental sequence] Length = 445 Score = 232 bits (592), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 111/233 (47%), Positives = 162/233 (69%), Gaps = 5/233 (2%) Query: 1 LDDISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDGGKILLGSQELRKKRSREQ--- 57 +D++S +L E TLGLVGESGSGKST+A++I GLIAP+ G ++ ++ L + Q Sbjct: 209 VDNVSFELFEGETLGLVGESGSGKSTIAKIITGLIAPNKGDLIYNNEPLYNSNKKYQIHN 268 Query: 58 -HKKIQMIFQNPDASLNPKHSIRQILSEAL-LFHKLVHRPQVEQRCKELLARVHLEAKAL 115 +IQMIFQ+P +SLNP+ ++ I++E + F K + ++ Q +L+ V + ++L Sbjct: 269 SRGQIQMIFQDPYSSLNPRFKVKDIIAEPIKFFQKNISNNELSQNVYDLIDIVGMTRQSL 328 Query: 116 DRYPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTELNLTM 175 DRYPHEFSGGQRQRI+IARAL+ P LLI DEPTSALDVS+Q +L L K ++ EL+LTM Sbjct: 329 DRYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSIQAQILNLLKDIQDELHLTM 388 Query: 176 LFISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPKM 228 LFISHDL VI + + + V++ G + E ++ F PEH+Y++EL+ +PK+ Sbjct: 389 LFISHDLPVIRQMCNRIIVLKNGAVCETKDTEELFNNPEHEYTKELIRLMPKI 441 Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 2/126 (1%) Query: 103 ELLARVHLEA--KALDRYPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSV 160 +LL V +E K ++ YPH+FSGG RQR+ IA A+S EP L+IADEPT+ALDVS+Q + Sbjct: 5 QLLKEVGIENAEKRIEDYPHQFSGGMRQRVVIALAISCEPDLIIADEPTTALDVSIQYQI 64 Query: 161 LELFKSLKTELNLTMLFISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRE 220 LEL K L + NL ++ I+HD+GVI +D V VMR G +VE+ + T P+ +R Sbjct: 65 LELLKDLTKKRNLGVIIITHDMGVIAETTDKVIVMRYGHIVEQGETKELLTNPKSTEARS 124 Query: 221 LLSAVP 226 L+ +VP Sbjct: 125 LVISVP 130 >ref|NP_796426.1| peptide ABC transporter, ATP-binding protein [Vibrio parahaemolyticus RIMD 2210633] dbj|BAC58310.1| peptide ABC transporter, ATP-binding protein [Vibrio parahaemolyticus] Length = 571 Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/232 (50%), Positives = 160/232 (68%), Gaps = 5/232 (2%) Query: 2 DDISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDGGKILLGSQELRKKRS----REQ 57 +++S ++ E T GLVGESGSGKST+ARVIAGL P+ G++ +L +S R Sbjct: 330 NNVSFEVHEGETFGLVGESGSGKSTIARVIAGLYEPNSGQVKFEGIDLTAMKSEKERRPM 389 Query: 58 HKKIQMIFQNPDASLNPKHSIRQILSEALLFHKLV-HRPQVEQRCKELLARVHLEAKALD 116 +++QM+FQNP S+NP+ + I++E + FH+L + + Q +LL V L A Sbjct: 390 RRQMQMVFQNPYTSMNPRMKVADIIAEPIRFHRLTKNEAETRQIVNDLLDHVGLGRMAGV 449 Query: 117 RYPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTELNLTML 176 +YPHEFSGGQRQRI+IARAL+ P LLI DEPTSALDVSVQ +L L K L++ELNLTML Sbjct: 450 KYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQSELNLTML 509 Query: 177 FISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPKM 228 FISHDL VI + D V VM+ G L+E + +Q FT P+H+YS++L+S +P+ Sbjct: 510 FISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTAPQHEYSKKLISLMPEF 561 Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 94/238 (39%), Positives = 140/238 (58%), Gaps = 18/238 (7%) Query: 4 ISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDG----GKILLGSQE--------LRK 51 +S +E +G+VGESG+GKST+ + L++P G G + L ++ +RK Sbjct: 26 LSFNIERGEIVGVVGESGAGKSTVGNAVIDLLSPPGRVASGDVFLDGEKISGLTPEAMRK 85 Query: 52 KRSREQHKKIQMIFQNPDASLNPKHSIRQILSEALLFHKLVHRPQVEQRCKELLARVHLE 111 R KI IFQ+P SLNP ++ Q L E + + V + QR L+ +V + Sbjct: 86 VRG----SKIGFIFQDPMTSLNPLFTVEQQLKETIHANMKVSDDEAYQRALSLMQQVGIP 141 Query: 112 A--KALDRYPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKT 169 L +YPH+FSGG RQR+ IA AL+ EP L+IADEPT+ALDVS+Q +L L + L Sbjct: 142 QPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTALDVSIQDQILNLIRELCI 201 Query: 170 ELNLTMLFISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPK 227 + N+ + ++HD+GV+ ++D VAVM +G LVE + P+H Y+R L+SAVP+ Sbjct: 202 QNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLGNPDHPYTRSLISAVPR 259 >ref|NP_886453.1| probable ABC transporter, ATP-binding protein [Bordetella parapertussis 12822] ref|NP_891445.1| probable ABC transporter, ATP-binding protein [Bordetella bronchiseptica RB50] emb|CAE35275.1| probable ABC transporter, ATP-binding protein [Bordetella bronchiseptica] emb|CAE39604.1| probable ABC transporter, ATP-binding protein [Bordetella parapertussis] Length = 573 Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/230 (50%), Positives = 156/230 (67%), Gaps = 5/230 (2%) Query: 4 ISLQLEEHTTLGLVGESGSGKSTLARVIAGLIAPDGGKILLGSQELR----KKRSREQHK 59 ++L + E GLVGESGSGKST+AR+IAGL P G++L +L +KR + Sbjct: 334 VNLSINEGEVFGLVGESGSGKSTVARLIAGLYTPTNGRVLFNGVDLTGLKDEKRMNAFRR 393 Query: 60 KIQMIFQNPDASLNPKHSIRQILSEALLFHKLVH-RPQVEQRCKELLARVHLEAKALDRY 118 +IQM+FQ+P +SLNP+ +++I++E + FH+L Q + +LL V L A A RY Sbjct: 394 QIQMVFQDPYSSLNPRMRVQEIVAEPIRFHRLAEGEAQTRRVVADLLDVVGLGASAAQRY 453 Query: 119 PHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTELNLTMLFI 178 PHEFSGGQRQRI IARAL+ P LI DEPTSALDVS+Q +L L K L+ +L LTMLFI Sbjct: 454 PHEFSGGQRQRICIARALATRPRFLICDEPTSALDVSIQAQILNLLKDLQEQLGLTMLFI 513 Query: 179 SHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPKM 228 SHDL VI + D V VM G+L+E ++ + FT PEHDY+R LLS +P++ Sbjct: 514 SHDLPVIRQMCDRVGVMLHGQLLETAATETLFTHPEHDYTRHLLSLMPRL 563 Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 104/237 (43%), Positives = 152/237 (64%), Gaps = 10/237 (4%) Query: 1 LDDISLQLEEHTTLGLVGESGSGKSTLARVIAGLI-APD---GGKILLGSQELRKKRSRE 56 +D +SL LE+ LG+VGESG+GKST+ + GL+ AP GG++LL + + + E Sbjct: 23 VDGVSLSLEKGEILGVVGESGAGKSTIGNAVIGLLEAPGRLAGGEVLLEGRRIDTLSNAE 82 Query: 57 QHK----KIQMIFQNPDASLNPKHSIRQILSEALLFHKLVHRPQVEQRCKELLARVHLEA 112 Q K +I MIFQ+P SL+P ++ L E + H ++ Q QR ELL +V ++ Sbjct: 83 QRKVRGRRIGMIFQDPLTSLDPLQTVESQLVETMQVHLDLNHEQARQRAVELLRQVGIDE 142 Query: 113 KAL--DRYPHEFSGGQRQRIAIARALSVEPSLLIADEPTSALDVSVQLSVLELFKSLKTE 170 L +YPH+FSGG RQR+ IA ALS P ++IADEPT+ALDVS+Q +L+L + L E Sbjct: 143 PELRVKQYPHQFSGGMRQRVVIALALSCGPEVIIADEPTTALDVSIQAQILDLLRKLCRE 202 Query: 171 LNLTMLFISHDLGVIHAISDTVAVMRQGKLVEKSSRDQFFTRPEHDYSRELLSAVPK 227 + M+ I+HD+GVI ++D VAV+ +GKLVE+ + P+H Y+R L+SAVP+ Sbjct: 203 KQVGMIIITHDMGVIADVTDRVAVLYRGKLVEQGPTAKILGNPDHPYTRSLISAVPR 259 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 331,836,724 Number of extensions: 12121402 Number of successful extensions: 114837 Number of sequences better than 1.0e-05: 20185 Number of HSP's gapped: 93898 Number of HSP's successfully gapped: 21753 Length of query: 242 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 120 Effective length of database: 425,995,500 Effective search space: 51119460000 Effective search space used: 51119460000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)