BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0016.p (225 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691861.1| phage shock protein A [Oceanobacillus iheyensis... 86 4e-16 ref|ZP_00097923.1| COG1842: Phage shock protein A (IM30), suppre... 79 9e-14 ref|NP_834503.1| Phage shock protein A [Bacillus cereus ATCC 145... 72 1e-11 ref|NP_658837.1| hypothetical protein predicted by GeneMark [Bac... 72 1e-11 ref|NP_981254.1| conserved hypothetical protein [Bacillus cereus... 72 1e-11 >ref|NP_691861.1| phage shock protein A [Oceanobacillus iheyensis HTE831] dbj|BAC12896.1| phage shock protein A (membrane protein) [Oceanobacillus iheyensis HTE831] Length = 223 Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 14/224 (6%) Query: 4 FRSMRDITVANLNERLEQSQDPVKLIDQFLHSTREEITEAERLYQQYAAHTKQLQQQVNQ 63 F ++ + + LN L++++DPVK++DQF+ E+I E E + ++ K L+++ + Sbjct: 5 FNRVKTVVSSELNSALDKAEDPVKMLDQFMRDMAEDIREVETAVAKQISNEKMLKRKADD 64 Query: 64 ATAMRNKREEQALLALKAGEDHLAKLALQEKIIHEEKXXXXXXXXXXXXXXXXXXXXXXX 123 A AM KR++QA A++AG D LA+ ALQ+K HE Sbjct: 65 AKAMMEKRQKQAEQAIEAGNDDLARRALQDKKEHEATATSLNESWTTAKNDAEVLKSKLD 124 Query: 124 XXKMEYQTVYSKRQYYAARMESLRLQQRMNQRATAYGNGSDVPKMFGRLEDRMSDWELEA 183 K EYQ + K+ AR ES + + ++N+ ++ GN S + F R+E+++ +E EA Sbjct: 125 EMKKEYQEMKLKKDSLKARAESAKTRTKINRTMSSIGNDS-SKQGFERMEEKVMRYEAEA 183 Query: 184 KS-------LRDLRRMGQEYAIQAGETVATVLEREMARLKEKLN 220 ++ R L +E Q G ++ E+A LK K+N Sbjct: 184 ETSEAMSYESRSLDDEFEELNKQNG------VDDELAALKAKMN 221 >ref|ZP_00097923.1| COG1842: Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Desulfitobacterium hafniense] Length = 225 Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 112/219 (51%), Gaps = 2/219 (0%) Query: 1 MSVFRSMRDITVANLNERLEQSQDPVKLIDQFLHSTREEITEAERLYQQYAAHTKQLQQQ 60 MS+F+ + D ANLN L++++DP K++DQ+L E+I EAE + A + + Q Sbjct: 4 MSLFKRVSDNIRANLNSLLDKAEDPEKMLDQYLRDMEEDIAEAEVAVAKQLAVAWKFKAQ 63 Query: 61 VNQATAMRNKREEQALLALKAGEDHLAKLALQEKIIHEEKXXXXXXXXXXXXXXXXXXXX 120 ++ A A+ KRE QA+ AL + LA+ AL++K I++ K Sbjct: 64 LDDAVALVEKREAQAMEALGNNREDLARRALEDKKINKAKSEEFRRQHESSSAMAEQLRS 123 Query: 121 XXXXXKMEYQTVYSKRQYYAARMESLRLQQRMNQRATAYGNGSDVPKMFGRLEDRMSDWE 180 K EY+ + KR AR ++ + QQ ++ + G S + F R+ED++ E Sbjct: 124 ELKEMKNEYEKLRIKRDTLVARAQAAKAQQEIHGAVSGLGKDS-TRRNFDRMEDKVLRME 182 Query: 181 LEAKSLRDLRRMGQEYAIQAGETVATVLEREMARLKEKL 219 EAK DLR + +++ A + E+E+A LKE+L Sbjct: 183 AEAKVAGDLREKDLDQELESLGKDAEI-EKELAALKERL 220 >ref|NP_834503.1| Phage shock protein A [Bacillus cereus ATCC 14579] gb|AAP11704.1| Phage shock protein A [Bacillus cereus ATCC 14579] Length = 221 Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 95/185 (51%), Gaps = 1/185 (0%) Query: 1 MSVFRSMRDITVANLNERLEQSQDPVKLIDQFLHSTREEITEAERLYQQYAAHTKQLQQQ 60 MSVF+ +RD+T++N+ +E+++DPVK+ DQ+L + ++ EAE+ A K+ + Sbjct: 1 MSVFKRLRDLTMSNVYSLIEKAEDPVKMTDQYLRDMQADVQEAEKSVAAQIALEKKFKIL 60 Query: 61 VNQATAMRNKREEQALLALKAGEDHLAKLALQEKIIHEEKXXXXXXXXXXXXXXXXXXXX 120 + A+ KREEQA +A++A LA+ AL+EK E+K Sbjct: 61 FEEQEALVKKREEQAHMAVQANNLDLARRALEEKQNAEQKMNEYKASYEQNKAAADNLRL 120 Query: 121 XXXXXKMEYQTVYSKRQYYAARMESLRLQQRMNQRATAYGNGSDVPKMFGRLEDRMSDWE 180 + + + +KR+ AR+ + + Q+ +NQ + + + S R+E++ E Sbjct: 121 KLEEMRKQLNELKNKRETLVARVNAAKAQKNINQAMSGFDSNS-AKAGLSRMEEKALQLE 179 Query: 181 LEAKS 185 EA++ Sbjct: 180 AEAEA 184 >ref|NP_658837.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847252.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28738.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 221 Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 95/185 (51%), Gaps = 1/185 (0%) Query: 1 MSVFRSMRDITVANLNERLEQSQDPVKLIDQFLHSTREEITEAERLYQQYAAHTKQLQQQ 60 MSVF+ +RD+T++N+ +E+++DPVK+ DQ+L + ++ EAE+ A K+ + Sbjct: 1 MSVFKRLRDLTMSNVYSLIEKAEDPVKMTDQYLRDMQADVQEAEKSVAAQIALEKKFKIL 60 Query: 61 VNQATAMRNKREEQALLALKAGEDHLAKLALQEKIIHEEKXXXXXXXXXXXXXXXXXXXX 120 + A+ KREEQA +A++A LA+ AL+EK E+K Sbjct: 61 FEEQEALVKKREEQAHMAVQASNLDLARRALEEKQNAEQKMNEYKASYEQNKAAADNLRL 120 Query: 121 XXXXXKMEYQTVYSKRQYYAARMESLRLQQRMNQRATAYGNGSDVPKMFGRLEDRMSDWE 180 + + + +KR+ AR+ + + Q+ +NQ + + + S R+E++ E Sbjct: 121 KLEEMRKQLTELKNKRETLVARVNAAKAQKNINQAMSGFDSNS-AKAGLSRMEEKALQLE 179 Query: 181 LEAKS 185 EA++ Sbjct: 180 AEAEA 184 >ref|NP_981254.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43862.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 221 Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 95/185 (51%), Gaps = 1/185 (0%) Query: 1 MSVFRSMRDITVANLNERLEQSQDPVKLIDQFLHSTREEITEAERLYQQYAAHTKQLQQQ 60 MSVF+ +RD+T++N+ +E+++DPVK+ DQ+L + ++ EAE+ A K+ + Sbjct: 1 MSVFKRLRDLTMSNVYSLIEKAEDPVKMTDQYLRDMQADVQEAEKSVAAQIALEKKFKIL 60 Query: 61 VNQATAMRNKREEQALLALKAGEDHLAKLALQEKIIHEEKXXXXXXXXXXXXXXXXXXXX 120 + A+ KREEQA +A++A LA+ AL+EK E+K Sbjct: 61 FEEQEALVKKREEQAHMAVQANNLDLARRALEEKQNAEQKMNEYKASYEQNKVAADNLRL 120 Query: 121 XXXXXKMEYQTVYSKRQYYAARMESLRLQQRMNQRATAYGNGSDVPKMFGRLEDRMSDWE 180 + + + +KR+ AR+ + + Q+ +NQ + + + S R+E++ E Sbjct: 121 KLEEMRKQLTELKNKRETLVARVNAAKAQKNINQAMSGFDSNS-AKAGLSRMEEKALQLE 179 Query: 181 LEAKS 185 EA++ Sbjct: 180 AEAEA 184 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.126 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 240,937,928 Number of extensions: 7578949 Number of successful extensions: 37969 Number of sequences better than 1.0e-05: 45 Number of HSP's gapped: 37958 Number of HSP's successfully gapped: 45 Length of query: 225 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 104 Effective length of database: 428,710,599 Effective search space: 44585902296 Effective search space used: 44585902296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)