BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0012.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00097262.1| COG1136: ABC-type antimicrobial peptide trans... 317 1e-85 ref|NP_782408.1| ABC transporter ATP-binding protein [Clostridiu... 284 1e-75 ref|NP_691280.1| ABC transporter ATP-binding protein [Oceanobaci... 276 3e-73 ref|ZP_00060008.1| COG1136: ABC-type antimicrobial peptide trans... 273 3e-72 ref|NP_782040.1| transporter [Clostridium tetani E88] >gi|282035... 267 1e-70 >ref|ZP_00097262.1| COG1136: ABC-type antimicrobial peptide transport system, ATPase component [Desulfitobacterium hafniense] Length = 227 Score = 317 bits (812), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 152/223 (68%), Positives = 185/223 (82%), Gaps = 1/223 (0%) Query: 1 MPILKIEHLKKYYGKDPQTTVKALDDVSLSVEKGEFLAIVGTSGSGKSTLLHMLGGLDRA 60 M ILK L+KYYG + T V+ALD V+L+V+KGEF+A+VGTSGSGKSTLLH+LGGLDR Sbjct: 3 MVILKTTDLRKYYG-EGDTAVRALDGVNLAVDKGEFVAVVGTSGSGKSTLLHLLGGLDRP 61 Query: 61 TAGKVIVDGNDIFAMSDEKLTIFRRRSVGFIFQSYNLVPILNVLENILLPIELDGGRVDQ 120 + G V VDG +IF++ DE+LTIFRRR +GF+FQSYNLVP+LN+ ENI+LPI+LDG D+ Sbjct: 62 SGGTVAVDGKEIFSLKDEELTIFRRRKIGFVFQSYNLVPVLNIYENIILPIQLDGNEPDE 121 Query: 121 AYLDEVIRALGLQEKIHNLPSNLSGGQQQRVAIARALATKPSIILADEPTGNLDSKTSQE 180 Y+ +++ LGL+ K+ NLP LSGGQQQRVAIARA+ATKP+IILADEPTGNLDS+TSQ+ Sbjct: 122 EYVTRIVQTLGLESKLQNLPGQLSGGQQQRVAIARAIATKPAIILADEPTGNLDSRTSQD 181 Query: 181 VLILLKQLSEKFNQTIVMITHNESIAQTADRIIRIEDGHIVSG 223 V+ LLK EKF QTIVMITHNE +AQ ADRIIRIEDG I G Sbjct: 182 VMGLLKVTGEKFRQTIVMITHNEDLAQLADRIIRIEDGQIAGG 224 >ref|NP_782408.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gb|AAO36345.1| ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 226 Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 138/222 (62%), Positives = 179/222 (80%), Gaps = 1/222 (0%) Query: 1 MPILKIEHLKKYYGKDPQTTVKALDDVSLSVEKGEFLAIVGTSGSGKSTLLHMLGGLDRA 60 M ILK+E+L K YG + V+AL +VS ++E+GEF+AIVG SGSGKSTLLHM+GGLD+ Sbjct: 1 MEILKVENLSKIYG-EGNNRVEALRNVSFAIERGEFVAIVGASGSGKSTLLHMIGGLDKP 59 Query: 61 TAGKVIVDGNDIFAMSDEKLTIFRRRSVGFIFQSYNLVPILNVLENILLPIELDGGRVDQ 120 T+GKV +DG DI+ + ++ L IFRRR+VGF+FQ +NL+P+LNV ENI LP LD ++D+ Sbjct: 60 TSGKVYIDGEDIYKLKEDNLAIFRRRNVGFVFQFFNLIPVLNVEENISLPALLDKDKIDK 119 Query: 121 AYLDEVIRALGLQEKIHNLPSNLSGGQQQRVAIARALATKPSIILADEPTGNLDSKTSQE 180 AYL EV+ LGL+E+I +LPS LSGGQQQRV+I RAL KPSIILADEPTGNLDSK S+E Sbjct: 120 AYLKEVVEMLGLKERITHLPSELSGGQQQRVSIGRALINKPSIILADEPTGNLDSKNSKE 179 Query: 181 VLILLKQLSEKFNQTIVMITHNESIAQTADRIIRIEDGHIVS 222 V+ LLK S+K+NQT+++ITH+ +IA+ ADR+I I DG I S Sbjct: 180 VIELLKYSSKKYNQTLIIITHDMNIAEQADRVINIVDGEIKS 221 >ref|NP_691280.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC12315.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 227 Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 135/220 (61%), Positives = 173/220 (78%), Gaps = 1/220 (0%) Query: 1 MPILKIEHLKKYYGKDPQTTVKALDDVSLSVEKGEFLAIVGTSGSGKSTLLHMLGGLDRA 60 M +LKIE+L K YGK T VKALDD+S SV+KGEF+AI+G SGSGKSTLLH+LGG+DR Sbjct: 1 MEMLKIENLSKVYGKG-DTAVKALDDISFSVDKGEFVAIIGPSGSGKSTLLHLLGGVDRP 59 Query: 61 TAGKVIVDGNDIFAMSDEKLTIFRRRSVGFIFQSYNLVPILNVLENILLPIELDGGRVDQ 120 T GKV VDG D++ +S+ +L IFRRR +G I+Q YNL+PIL V ENI LP+ LD +VDQ Sbjct: 60 TEGKVFVDGTDMYELSETQLAIFRRRQIGLIYQFYNLLPILTVEENITLPLLLDSHKVDQ 119 Query: 121 AYLDEVIRALGLQEKIHNLPSNLSGGQQQRVAIARALATKPSIILADEPTGNLDSKTSQE 180 + E++ LGLQ++I LP+ LSGGQQQRV+I RA+ + PSIILADEPTGNLDS+ S+E Sbjct: 120 KHFKEIVDILGLQKRIEYLPNQLSGGQQQRVSIGRAIISNPSIILADEPTGNLDSENSKE 179 Query: 181 VLILLKQLSEKFNQTIVMITHNESIAQTADRIIRIEDGHI 220 ++ LLK + +NQT+V+ITH++ IA ADR+I IEDG I Sbjct: 180 IVDLLKMFNRTYNQTLVVITHDDRIALQADRVISIEDGRI 219 >ref|ZP_00060008.1| COG1136: ABC-type antimicrobial peptide transport system, ATPase component [Clostridium thermocellum ATCC 27405] Length = 231 Score = 273 bits (697), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 130/221 (58%), Positives = 179/221 (80%), Gaps = 1/221 (0%) Query: 1 MPILKIEHLKKYYGKDPQTTVKALDDVSLSVEKGEFLAIVGTSGSGKSTLLHMLGGLDRA 60 M IL++E++ K YG + V+ALD VS SV+KGEF+AIVG SGSGKSTLLH+LGG+D+ Sbjct: 5 MEILRVENVTKTYGTG-ENMVRALDGVSFSVKKGEFIAIVGPSGSGKSTLLHILGGVDKP 63 Query: 61 TAGKVIVDGNDIFAMSDEKLTIFRRRSVGFIFQSYNLVPILNVLENILLPIELDGGRVDQ 120 T+GKV +DG D++A +DE+L IFRRR VG I+Q YNL+P+LNV+ENI LP+ +DG +V++ Sbjct: 64 TSGKVFMDGKDVYAQNDEQLAIFRRRQVGLIYQFYNLIPVLNVVENITLPVLMDGRKVNK 123 Query: 121 AYLDEVIRALGLQEKIHNLPSNLSGGQQQRVAIARALATKPSIILADEPTGNLDSKTSQE 180 L+E+I L L+ + ++LP+ LSGGQQQRV+I RAL PS++LADEPTGNLDSK SQE Sbjct: 124 ERLEELIETLNLKGRENHLPNQLSGGQQQRVSIGRALINAPSVVLADEPTGNLDSKNSQE 183 Query: 181 VLILLKQLSEKFNQTIVMITHNESIAQTADRIIRIEDGHIV 221 ++ LLK ++K+NQT+++ITH+E+IA A+R+I IEDG I+ Sbjct: 184 IVELLKLSNKKYNQTLIVITHDENIALQANRVIAIEDGRII 224 >ref|NP_782040.1| transporter [Clostridium tetani E88] gb|AAO35977.1| transporter [Clostridium tetani E88] Length = 227 Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 132/221 (59%), Positives = 175/221 (79%), Gaps = 1/221 (0%) Query: 1 MPILKIEHLKKYYGKDPQTTVKALDDVSLSVEKGEFLAIVGTSGSGKSTLLHMLGGLDRA 60 M +LK L K YG T V AL ++++S+ +GEF+A+VG SGSGKSTLLH+LGG+D+ Sbjct: 1 MEVLKTIDLSKSYGLG-DTKVNALKNINISINEGEFVAVVGASGSGKSTLLHLLGGVDKP 59 Query: 61 TAGKVIVDGNDIFAMSDEKLTIFRRRSVGFIFQSYNLVPILNVLENILLPIELDGGRVDQ 120 T+GKVIVDG DI+A+S+++L +FRRR +GFIFQ YNL+P+L ENI LPI LD +VD+ Sbjct: 60 TSGKVIVDGADIYALSEKELAVFRRRKIGFIFQFYNLIPVLTAEENITLPILLDNKKVDK 119 Query: 121 AYLDEVIRALGLQEKIHNLPSNLSGGQQQRVAIARALATKPSIILADEPTGNLDSKTSQE 180 Y +E+I LGLQ + ++LPS LSGGQQQRV+I RALA KPSIILADEPTGNLDSK S+E Sbjct: 120 KYEEELINILGLQNRRNHLPSELSGGQQQRVSIGRALAYKPSIILADEPTGNLDSKNSKE 179 Query: 181 VLILLKQLSEKFNQTIVMITHNESIAQTADRIIRIEDGHIV 221 ++ LL+ +K++QT+++ITH+ +IA ADRII IEDG +V Sbjct: 180 IIELLRFSVQKYHQTLIIITHDLNIASQADRIITIEDGSVV 220 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.135 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 333,683,580 Number of extensions: 13399531 Number of successful extensions: 120909 Number of sequences better than 1.0e-05: 22798 Number of HSP's gapped: 94550 Number of HSP's successfully gapped: 24698 Length of query: 233 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 111 Effective length of database: 425,995,500 Effective search space: 47285500500 Effective search space used: 47285500500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)