BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0007.p (150 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_625707.1| putative AsnC-family transcriptional regulatory... 71 7e-12 ref|NP_376373.1| 151aa long hypothetical transcriptional regulat... 71 8e-12 ref|NP_828097.1| putative AsnC-family transcriptional regulator ... 70 2e-11 ref|NP_742824.1| transcriptional regulator, AsnC family [Pseudom... 69 3e-11 ref|NP_253472.1| probable transcriptional regulator [Pseudomonas... 69 4e-11 >ref|NP_625707.1| putative AsnC-family transcriptional regulatory protein [Streptomyces coelicolor A3(2)] emb|CAB61666.1| putative AsnC-family transcriptional regulatory protein [Streptomyces coelicolor A3(2)] Length = 165 Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 6/131 (4%) Query: 15 NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74 +GR+ + ++G+ +S VHQRV +LE+ GVI+GY +VD + Sbjct: 34 DGRMSYTDLGKATGLSTSAVHQRVRRLEQRGVIRGYAAVVDPEAVG----LPMTAFISVK 89 Query: 75 XFRQAADQIIGIQIPGVSVLE-CQRMAGEWCMLLKVRVASPEQLTLLLDEILRIPDIKET 133 F +A I ++ GV +E C +AG+ +LKVRVA+P +L LL + + + T Sbjct: 90 PFDPSAPDDIADRLAGVPEIEACHSVAGDENYILKVRVATPHELEELLARVRSLAGVS-T 148 Query: 134 STTFILSTIYE 144 TT +LST YE Sbjct: 149 RTTVVLSTPYE 159 >ref|NP_376373.1| 151aa long hypothetical transcriptional regulator [Sulfolobus tokodaii] dbj|BAB65482.1| 151aa long hypothetical transcriptional regulator [Sulfolobus tokodaii] Length = 151 Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 15 NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74 + R P +I ++L++S T+H R+ +L +NG+IKG+ VD K+ Sbjct: 19 DARTPFSKIAKMLNLSESTIHIRIKRLRENGIIKGFYVDVDPEKIGYNVVAFVLIKADPK 78 Query: 75 XFRQAADQIIGIQIPGVSVLECQRMAGEWCMLLKVRVASPEQLTLLLDEILRIPDIKETS 134 + Q +I + V E + GE+ LLKVRV S E+L +LD+I + + T Sbjct: 79 KYEQILKKIYEFK----EVYEIFDVTGEYYALLKVRVKSREELATILDKIGNMDGVTSTY 134 Query: 135 TTFILSTIYEDGMKGI 150 T F+L TI E MK I Sbjct: 135 TMFVLRTIKE--MKTI 148 >ref|NP_828097.1| putative AsnC-family transcriptional regulator [Streptomyces avermitilis MA-4680] dbj|BAC74632.1| putative AsnC-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 165 Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 6/131 (4%) Query: 15 NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74 +GR+ + ++G+ +S VHQRV +LE+ GVI+GY +VD + Sbjct: 34 DGRMSYTDLGKATGLSTSAVHQRVRRLEQRGVIRGYAAVVDSEAVG----LPLTAFISVK 89 Query: 75 XFRQAADQIIGIQIPGVSVLE-CQRMAGEWCMLLKVRVASPEQLTLLLDEILRIPDIKET 133 F +A I ++ GV +E C +AG+ +LKVRV++P +L LL + + + T Sbjct: 90 PFDPSAPDDIAERLAGVPEIEACHSVAGDENYILKVRVSTPHELEELLARVRTLAGVS-T 148 Query: 134 STTFILSTIYE 144 TT +LST YE Sbjct: 149 RTTVVLSTPYE 159 >ref|NP_742824.1| transcriptional regulator, AsnC family [Pseudomonas putida KT2440] gb|AAN66288.1| transcriptional regulator, AsnC family [Pseudomonas putida KT2440] Length = 145 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 2/128 (1%) Query: 15 NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74 N R+ H E+G +++SR V QR+ +LE++G I+GY + G+ Sbjct: 19 NARIAHAELGLKVNLSRNAVRQRIERLERDGAIQGYTLRIGEGRRPASLINAVIFVYRYD 78 Query: 75 XFRQAADQIIGIQIPGVSVLECQRMAGEWCMLLKVRVASPEQLTLLLDEILRIPDIKETS 134 R A QIP V++C+ ++GE+ ++L+V +SPE++ + EI +P ++ T Sbjct: 79 RMRGEAVLDALRQIP--EVIQCEVLSGEFDLMLRVEASSPERVHHVWKEIAAMPGVENTV 136 Query: 135 TTFILSTI 142 T+F+L+ + Sbjct: 137 TSFVLAAV 144 >ref|NP_253472.1| probable transcriptional regulator [Pseudomonas aeruginosa PA01] ref|ZP_00141231.1| COG1522: Transcriptional regulators [Pseudomonas aeruginosa UCBPP-PA14] pir||F83046 probable transcription regulator PA4784 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08170.1| probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 155 Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 7/131 (5%) Query: 15 NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74 NGRL E+ R +++S P V RV+KLE GVI GY V+ KL Sbjct: 15 NGRLTFAELARRINLSPPAVADRVAKLEAEGVITGYHASVNLAKLGLPIECVIELRITEK 74 Query: 75 XFRQAADQIIGIQIPGVSVLECQRMAGEWCMLLKVRVASPEQLTLLLDEILRIPDIKETS 134 + D++ +IP +++ C R+ G+ C+L+K VAS +L L+D +++ + Sbjct: 75 DCQSVLDEL--ARIPQLTL--CHRITGDACVLMKAAVASMPELQDLIDRLMK---FGISK 127 Query: 135 TTFILSTIYED 145 T+ ILST + D Sbjct: 128 TSMILSTPFAD 138 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.141 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 169,001,852 Number of extensions: 5163763 Number of successful extensions: 13474 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 13529 Number of HSP's successfully gapped: 35 Length of query: 150 Length of database: 757,237,578 Length adjustment: 109 Effective length of query: 41 Effective length of database: 461,291,787 Effective search space: 18912963267 Effective search space used: 18912963267 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)