BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0003.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00019228.1| hypothetical protein [Chloroflexus aurantiacus] 177 2e-43 ref|NP_471178.1| similar to sugar ABC transporter, permease prot... 161 1e-38 ref|NP_465257.1| similar to sugar ABC transporter, permease prot... 161 2e-38 ref|NP_624854.1| probable sugar transport membrane protein [Stre... 158 1e-37 ref|NP_816523.1| ABC transporter, permease protein [Enterococcus... 158 1e-37 >ref|ZP_00019228.1| hypothetical protein [Chloroflexus aurantiacus] Length = 296 Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 146/253 (57%), Gaps = 4/253 (1%) Query: 26 YWMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEAPFARYMGNSIFVAASIVILQII 85 YW V +A K EI+ P T WP P NF AAW APF RY NS L++ Sbjct: 48 YWTVMAAFKETREIYSLPVTWWPANPTLNNFPAAWQAAPFGRYYLNSFITTFFGAALEVT 107 Query: 86 NSGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLPGYLVLSELHLLNSYAGLILSNC 145 + AYAL +++F K L ++L M+P +P YL ++ L +N+Y G+I+ Sbjct: 108 LALFSAYALAYLRFPRKDLVFLLLLAALMIPVEITIVPNYLTIARLGWINTYQGIIIPGA 167 Query: 146 VSIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTVLVPVTRSSFAVLALITFIDQYN 205 + FL+RQ+FL + HE++EA VDGA H+RIL++V+ P+ + + +AL++ + ++N Sbjct: 168 AIAYGTFLLRQSFLAIPHEILEAARVDGAGHLRILFSVVAPIAQPAIVTMALLSVVSKWN 227 Query: 206 NYFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTI 265 + WP+++T D++ + G+ F++ W ++MA S F I P+L+ FL AQ+ I Sbjct: 228 EFLWPLIVTNTTDMRTLPIGV--FWLRNSEGFANWGVVMAGSLFLIVPVLIAFLFAQRAI 285 Query: 266 MQSVNMTAGSSKG 278 ++ MTAG+ KG Sbjct: 286 VE--GMTAGAVKG 296 >ref|NP_471178.1| similar to sugar ABC transporter, permease protein [Listeria innocua] pir||AB1663 sugar ABC transporter, permease protein homolog lin1843 [imported] - Listeria innocua (strain Clip11262) emb|CAC97074.1| lin1843 [Listeria innocua] Length = 276 Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 137/247 (55%), Gaps = 4/247 (1%) Query: 27 WMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEAPFARYMGNSIFVAASIVILQIIN 86 WMV S+LKT+ EI + PPT+WPE NF+ + E FA Y+ N++ + +N Sbjct: 32 WMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSFFGLFLN 91 Query: 87 SGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLPGYLVLSELHLLNSYAGLILSNCV 146 + M Y KF+ K ++L M+P +P YL+L+ L N+ G++L V Sbjct: 92 A-MAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLPGLV 150 Query: 147 SIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTVLVPVTRSSFAVLALITFIDQYNN 206 F IFL RQ +S +L+EA +DGAS I W +++P++R AV ++TFI +N+ Sbjct: 151 GAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAGWNS 210 Query: 207 YFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTIM 266 + WP++I + +S GL+ + G YG + L MA + F + P++L+F+ QK I+ Sbjct: 211 FLWPLIIANDEKFYTLSVGLQ---LLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYIL 267 Query: 267 QSVNMTA 273 + N++ Sbjct: 268 KGFNVSG 274 >ref|NP_465257.1| similar to sugar ABC transporter, permease protein [Listeria monocytogenes EGD-e] pir||AD1291 sugar ABC transporter, permease protein homolog lmo1732 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99810.1| lmo1732 [Listeria monocytogenes] Length = 276 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 137/247 (55%), Gaps = 4/247 (1%) Query: 27 WMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEAPFARYMGNSIFVAASIVILQIIN 86 WMV S+LKT+ EI + PPT+WPE NF+ + E FA Y+ N++ + +N Sbjct: 32 WMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSFFGLFLN 91 Query: 87 SGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLPGYLVLSELHLLNSYAGLILSNCV 146 + M Y KF+ K ++L M+P +P YL+L+ L N+ G++L V Sbjct: 92 A-MAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLPGLV 150 Query: 147 SIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTVLVPVTRSSFAVLALITFIDQYNN 206 F IFL RQ +S +L+EA +DGAS I W +++P++R AV ++TFI +N+ Sbjct: 151 GAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAGWNS 210 Query: 207 YFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTIM 266 + WP++I + +S GL+ + G YG + L MA + F + P++L+F+ QK I+ Sbjct: 211 FLWPLIIANDEKFYTLSVGLQ---LLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYIL 267 Query: 267 QSVNMTA 273 + N++ Sbjct: 268 KGFNVSG 274 >ref|NP_624854.1| probable sugar transport membrane protein [Streptomyces coelicolor A3(2)] emb|CAB59597.1| probable sugar transport membrane protein [Streptomyces coelicolor A3(2)] Length = 299 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 145/253 (57%), Gaps = 7/253 (2%) Query: 27 WMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEAPFARYMGNSIFVAASIVILQIIN 86 W+V S++ +N EI R PP LWP G + A F R+ NS+ V+A V ++ Sbjct: 53 WLVLSSVMSNAEINRFPPALWPSGIDLGGYRYVLGNAMFPRWFVNSLIVSAVTVAANLVF 112 Query: 87 SGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLPGYLVLSELHLLNSYAGLILSNCV 146 + YA M+F + G++L VP +P +LV+ +L L+++ LI+ + V Sbjct: 113 GSLAGYAFARMRFAGSRVLMGLMLATMAVPFQLTMIPTFLVMKKLGLIDTLGALIVPSLV 172 Query: 147 SIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTVLVPVTRSSFAVLALITFIDQYNN 206 + FA+FL+RQ FL + EL EA +DG S +R+LW +++P++R + A +A++TF+ +N+ Sbjct: 173 TPFAVFLLRQFFLSLPRELEEAAWIDGCSRLRVLWRIVLPLSRPALATVAVLTFLTTWND 232 Query: 207 YFWPMLITKNPDLQ-LVSAGLRSFFVEGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTI 265 WP LI N D Q + GL +F G + QW +MA + T+ P+LL FL AQKT Sbjct: 233 LTWP-LIAINHDTQYTLQLGLTTF---QGQHHTQWAAVMAGNVITVLPVLLAFLGAQKTF 288 Query: 266 MQSVNMTAGSSKG 278 +QS+ T+ KG Sbjct: 289 IQSI--TSSGLKG 299 >ref|NP_816523.1| ABC transporter, permease protein [Enterococcus faecalis V583] gb|AAO82593.1| ABC transporter, permease protein [Enterococcus faecalis V583] Length = 272 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 144/243 (59%), Gaps = 3/243 (1%) Query: 27 WMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEAPFARYMGNSIFVAASIVILQIIN 86 +M+ + L + E PPT++P+ P W N++ + +APF RY N++FV+ I ++ Sbjct: 26 YMILAGLMSYSEATSMPPTMFPKQPQWQNYTEVFQKAPFLRYFLNTVFVSGVTTIATVVT 85 Query: 87 SGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLPGYLVLSELHLLNSYAGLILSNCV 146 + + ++ALT +KFR K + +++ MVP ++ Y +++L LLN+Y+ LI+ Sbjct: 86 AVLASFALTSLKFRFKNVVIALMISLLMVPYESIIFTNYQTIAQLGLLNTYSALIIPFLT 145 Query: 147 SIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTVLVPVTRSSFAVLALITFIDQYNN 206 SIF I+ + + +A ++DGAS + +W +LVP+++ + + ++TFI +N+ Sbjct: 146 SIFYIYYLNGYLKGIPDTFYKAAKIDGASDLEYIWRILVPMSKPALVTVGILTFISSWNS 205 Query: 207 YFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTIM 266 + WP+L+T +L++ GL +F E G+ L MAA+ T+ P+L+++L+ +K I+ Sbjct: 206 FLWPLLVTNEKKYRLLNNGLSAFATESGS---DVHLQMAAATLTVIPILIIYLIFRKEII 262 Query: 267 QSV 269 + V Sbjct: 263 RGV 265 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.138 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 366,422,587 Number of extensions: 13785366 Number of successful extensions: 46654 Number of sequences better than 1.0e-05: 1240 Number of HSP's gapped: 45388 Number of HSP's successfully gapped: 1240 Length of query: 278 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 154 Effective length of database: 420,565,302 Effective search space: 64767056508 Effective search space used: 64767056508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 125 (52.8 bits)