BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0040.p (194 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAD62362.1| unknown [environmental sequence] 68 1e-10 ref|ZP_00022110.1| COG0454: Histone acetyltransferase HPA2 and r... 65 8e-10 gb|EAE17251.1| unknown [environmental sequence] 63 4e-09 ref|ZP_00170648.1| hypothetical protein Raeut192401 [Ralstonia e... 62 8e-09 ref|NP_103617.1| hypothetical protein mll2222 [Mesorhizobium lot... 57 2e-07 >gb|EAD62362.1| unknown [environmental sequence] Length = 173 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 6/149 (4%) Query: 4 SKEILIRNAADSDRDAIAKVLLEAYGQYAAELPEPFWAEYRRSILDSVHGTAPYARIV-A 62 + +++IR A SD ++IA + + AY + P + + L V G A A IV A Sbjct: 2 TSQLVIREAETSDYESIANLTMAAYKPLFEGVGLPEDLGWYGAELRDVAGRASRAMIVVA 61 Query: 63 EIDNRIVGSVLLFLS-SEEAY-GRPELGIRSPIIRLLAVSPSVRGRGIAVLLIREAARRS 120 EID++IVGS+ +EEA+ G P+ R+LA PS +GRGI L R ++ Sbjct: 62 EIDHQIVGSLAYHHDYAEEAHEGNPQ---DCAGFRVLATDPSYQGRGIGEALTRWCIDKA 118 Query: 121 IGLGAATLNLHTSDMMASAVKLYERLGFQ 149 G + L L+T+D M +A +LY RLGF+ Sbjct: 119 RSDGRSALVLNTTDYMEAAQRLYRRLGFE 147 >ref|ZP_00022110.1| COG0454: Histone acetyltransferase HPA2 and related acetyltransferases [Ralstonia metallidurans] Length = 192 Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 4/162 (2%) Query: 2 SNSKEILIRNAADSDRDAIAKVLLEAYGQYAAELPEPFWAEYRRSILD--SVHGTAPYAR 59 NS R AA D IA V AYGQY E+ E A ++R + + Sbjct: 7 QNSPRFRFRLAATYDWGDIAAVTQHAYGQYELEIMEDCRASFQRGMQSVLAAKDNPDMEW 66 Query: 60 IVAEIDNRIVGSVLLFL--SSEEAYGRPELGIRSPIIRLLAVSPSVRGRGIAVLLIREAA 117 VAE D+ I G+VL ++ A + + P RLL+VSP RG G+ L++ Sbjct: 67 WVAETDHGISGAVLFCHPDATVPALDGSMVTLTQPEARLLSVSPQARGLGLGHRLMQICI 126 Query: 118 RRSIGLGAATLNLHTSDMMASAVKLYERLGFQRAYETDIMNG 159 +R+ +G+ TL T M SA +L +++GF++ E +G Sbjct: 127 QRARDIGSKTLVCRTMPEMDSANRLCQQMGFEKRTEAGARHG 168 >gb|EAE17251.1| unknown [environmental sequence] Length = 154 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 6/146 (4%) Query: 7 ILIRNAADSDRDAIAKVLLEAYGQYAAELPEPFWAEYRRSILDSVHGTAPYARI-VAEID 65 +LIR A S+ + +A + + AY EL P + + L V G A + I VA D Sbjct: 5 LLIREAQSSEYETVANLTMAAYRPLFTELDLPEDLGWYGAELRDVAGRAARSEIIVAVTD 64 Query: 66 NRIVGSVLLF--LSSEEAYGRPELGIRSPIIRLLAVSPSVRGRGIAVLLIREAARRSIGL 123 +IVGS+ S E G P R+LA P ++GRG+ L R R+ Sbjct: 65 EQIVGSLAYHDDYSDEVKSGNPR---NCAGFRVLATDPKLQGRGVGEALTRWCIERARSD 121 Query: 124 GAATLNLHTSDMMASAVKLYERLGFQ 149 G L L+T+D M +A +LY RLGF+ Sbjct: 122 GRTALLLNTTDYMKAAQRLYRRLGFE 147 >ref|ZP_00170648.1| hypothetical protein Raeut192401 [Ralstonia eutropha JMP134] Length = 190 Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 7/162 (4%) Query: 3 NSKEILIRNAADSDRDAIAKVLLEAYGQYAAELPEPFWAEYRR---SILDSVHGTAPYAR 59 S R A D IA V +AY QY E+ E A ++R ++L + H + Sbjct: 8 TSPRFHYRLATVQDWGDIAAVTQQAYSQYELEIMEDCRASFQRGMQAVLATSHPDMEW-- 65 Query: 60 IVAEIDNRIVGSVLLFL--SSEEAYGRPELGIRSPIIRLLAVSPSVRGRGIAVLLIREAA 117 VAE ++ I G+VL ++ A + + P RLL+VSP RG G+ L++ Sbjct: 66 WVAETEHGIAGAVLFCHPGATLPALDGSTITLTQPEARLLSVSPQARGLGLGHTLMQICI 125 Query: 118 RRSIGLGAATLNLHTSDMMASAVKLYERLGFQRAYETDIMNG 159 +R+ +G+ TL + T MASA +L +++GF + E G Sbjct: 126 QRARDIGSPTLLVRTMPEMASANRLCQQMGFAKRTEAGARTG 167 >ref|NP_103617.1| hypothetical protein mll2222 [Mesorhizobium loti MAFF303099] dbj|BAB49403.1| hypothetical protein [Mesorhizobium loti] Length = 155 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 21/165 (12%) Query: 1 MSNSKEILIRNAADSDRDAIAKVLLEAYGQYAAEL---PEPFWAEYRRSILDSVHGTAPY 57 M+ + I R A +D AI ++ AYG++ + P P A+Y +++ + P+ Sbjct: 1 MTINSSIRFRPAEPADAAAIRDIVRSAYGKWVPVIGREPLPMRADYGKAVAEH-----PF 55 Query: 58 ARIVAEIDNRIVGSVLLFLSSEEAYGRPELGIRSPIIRLLAVSPSVRGRGIAVLLIREAA 117 VA D RIVG + L+ + + I + V+P +G+GI LL+ A Sbjct: 56 ELAVA--DGRIVGMIETMLAGDHLW-----------IENVCVAPQAQGKGIGRLLLERAE 102 Query: 118 RRSIGLGAATLNLHTSDMMASAVKLYERLGFQRAYETDIMNGDTL 162 ++++ G A L L T+ + V LY+R G+ E M G T+ Sbjct: 103 QKALEAGRAELRLLTNGAFEANVLLYKRHGYTINREEPFMGGMTV 147 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 259,905,539 Number of extensions: 9759631 Number of successful extensions: 22945 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 23015 Number of HSP's successfully gapped: 8 Length of query: 194 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 75 Effective length of database: 434,140,797 Effective search space: 32560559775 Effective search space used: 32560559775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)