BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0026.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_391192.1| similar to hypothetical proteins from B. subtil... 63 6e-09 ref|NP_691861.1| phage shock protein A [Oceanobacillus iheyensis... 62 7e-09 ref|NP_242062.1| BH1196~unknown conserved protein [Bacillus halo... 62 9e-09 ref|ZP_00097923.1| COG1842: Phage shock protein A (IM30), suppre... 55 2e-06 ref|NP_346954.1| Phage shock protein A [Clostridium acetobutylic... 54 2e-06 >ref|NP_391192.1| similar to hypothetical proteins from B. subtilis [Bacillus subtilis] sp|O32201|YVQH_BACSU Hypothetical protein yvqH pir||A70046 conserved hypothetical protein yvqH - Bacillus subtilis emb|CAB15302.1| yvqH [Bacillus subtilis subsp. subtilis str. 168] emb|CAA11741.1| YvqH protein [Bacillus subtilis] Length = 225 Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 107/228 (46%), Gaps = 28/228 (12%) Query: 5 IFQRITTLTKAAIHEGLNKLEDPVLLTGQYLRDLEEKISTAETKQREFQAAASVLERRIY 64 + +RI + A++HEGL+K+E+P ++ QY+RD+E I+ A+ + A +++ Sbjct: 2 VLKRIRDMFVASVHEGLDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYE 61 Query: 65 ENQVLAERSEAEAVQAMNEGNEPAARAAVMAKLRYTE--------SVQECTAGLEETRET 116 E +A + + +A A + G E A+ A + +++Y E S ++ + L + +E Sbjct: 62 EAAEVAGKRKNQAQLAFDAGEEELAKKA-LTEMKYLEGKAAEHKASYEQANSQLADLKEQ 120 Query: 117 LAVLDSSLLNAREEHXXXXXXXXXXXXXXXXXXXXXXXSESSSYSAHPGHPGQILNAGAA 176 LA L++ L + +++ + ++ H +++ +A Sbjct: 121 LAALETKLQDVKDK-----------------KQALIARANAAKAKEHMNTTFDKIDSESA 163 Query: 177 SRGFERMEDKINEWEAAVESSAHYSAG--IPESPLNSAVEAELERLRS 222 R F R+E++I E E S AG + VEAE+E++R+ Sbjct: 164 YREFLRIENRIEEMEIRANYSKSAEAGTELTRKEFADDVEAEIEKMRT 211 >ref|NP_691861.1| phage shock protein A [Oceanobacillus iheyensis HTE831] dbj|BAC12896.1| phage shock protein A (membrane protein) [Oceanobacillus iheyensis HTE831] Length = 223 Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 10/193 (5%) Query: 5 IFQRITTLTKAAIHEGLNKLEDPVLLTGQYLRDLEEKISTAETKQREFQAAASVLERRIY 64 F R+ T+ + ++ L+K EDPV + Q++RD+ E I ET + + +L+R+ Sbjct: 4 FFNRVKTVVSSELNSALDKAEDPVKMLDQFMRDMAEDIREVETAVAKQISNEKMLKRKAD 63 Query: 65 ENQVLAERSEAEAVQAMNEGNEPAARAAVMAKLRYTESVQECTAGLEETRETLAVLDSSL 124 + + + E+ + +A QA+ GN+ AR A+ K + + + VL S L Sbjct: 64 DAKAMMEKRQKQAEQAIEAGNDDLARRALQDKKEHEATATSLNESWTTAKNDAEVLKSKL 123 Query: 125 LNAREEHXXXXXXXXXXXXXXXXXXXXXXXSESSSYSAHPGHPGQILNAGAASRGFERME 184 ++E+ +ES+ + ++ +GFERME Sbjct: 124 DEMKKEY----------QEMKLKKDSLKARAESAKTRTKINRTMSSIGNDSSKQGFERME 173 Query: 185 DKINEWEAAVESS 197 +K+ +EA E+S Sbjct: 174 EKVMRYEAEAETS 186 >ref|NP_242062.1| BH1196~unknown conserved protein [Bacillus halodurans] pir||D83799 hypothetical protein BH1196 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04915.1| BH1196~unknown conserved protein [Bacillus halodurans] Length = 220 Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 58/99 (58%) Query: 5 IFQRITTLTKAAIHEGLNKLEDPVLLTGQYLRDLEEKISTAETKQREFQAAASVLERRIY 64 +F R+ L A+IHEGL+KLEDP ++ QY+R+++ ++ AE E + LER + Sbjct: 2 VFDRMKNLVLASIHEGLDKLEDPEMMLNQYIRNVQSEMGRAEKAIEEQKKLHVSLERDLE 61 Query: 65 ENQVLAERSEAEAVQAMNEGNEPAARAAVMAKLRYTESV 103 E + L +R E +A A++ G E A+ A+ +K E V Sbjct: 62 EAKRLMKRREEQAKAALSAGEEELAKKALYSKKNAAEQV 100 >ref|ZP_00097923.1| COG1842: Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Desulfitobacterium hafniense] Length = 225 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 54/91 (59%) Query: 3 MSIFQRITTLTKAAIHEGLNKLEDPVLLTGQYLRDLEEKISTAETKQREFQAAASVLERR 62 MS+F+R++ +A ++ L+K EDP + QYLRD+EE I+ AE + A A + + Sbjct: 4 MSLFKRVSDNIRANLNSLLDKAEDPEKMLDQYLRDMEEDIAEAEVAVAKQLAVAWKFKAQ 63 Query: 63 IYENQVLAERSEAEAVQAMNEGNEPAARAAV 93 + + L E+ EA+A++A+ E AR A+ Sbjct: 64 LDDAVALVEKREAQAMEALGNNREDLARRAL 94 >ref|NP_346954.1| Phage shock protein A [Clostridium acetobutylicum] pir||C96938 phage shock protein A [imported] - Clostridium acetobutylicum gb|AAK78294.1| Phage shock protein A [Clostridium acetobutylicum] Length = 218 Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 63/105 (60%), Gaps = 3/105 (2%) Query: 3 MSIFQRITTLTKAAIHEGLNKLEDPVLLTGQYLRDLEEKISTAETKQREFQAAASVLERR 62 M IF+R++ + KA ++ L+++E+P+ L Q +RD+EE ++ A+ + A +E++ Sbjct: 1 MGIFKRVSNMVKAKVNNTLDEMENPIELLDQKIRDMEESLNKAKISSAQILGNAHEIEKK 60 Query: 63 IYENQVLAERSEAEAVQAMNEGNEPAARAAVMAKL---RYTESVQ 104 + + ++ +E +++ A+ GN+ A+ A+ KL + ES+Q Sbjct: 61 LQKARLESEDYDSKVKLAVKNGNDDLAKRALERKLDADKRCESLQ 105 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.308 0.122 0.321 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 252,916,210 Number of extensions: 7817695 Number of successful extensions: 25495 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 25501 Number of HSP's successfully gapped: 14 Length of query: 229 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 108 Effective length of database: 428,710,599 Effective search space: 46300744692 Effective search space used: 46300744692 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 124 (52.4 bits)