BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0024.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_466014.1| lmo2491 [Listeria monocytogenes EGD-e] >gi|2551... 226 3e-58 ref|NP_471964.1| lin2634 [Listeria innocua] >gi|25515877|pir||AE... 224 8e-58 ref|NP_764093.1| conserved hypothetical protein [Staphylococcus ... 207 9e-53 ref|ZP_00064325.1| COG1896: Predicted hydrolases of HD superfami... 206 3e-52 ref|NP_371280.1| conserved hypothetical protein [Staphylococcus ... 205 5e-52 >ref|NP_466014.1| lmo2491 [Listeria monocytogenes EGD-e] pir||AC1386 hypothetical protein lmo2491 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00569.1| lmo2491 [Listeria monocytogenes] Length = 215 Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 106/206 (51%), Positives = 149/206 (72%), Gaps = 1/206 (0%) Query: 1 MGIHKYFRSLNELERIIRCPGKFKFEEHSVAAHSWKVVQYAKTLADIEEQNGAVIDWKKL 60 MGIH+YF+SL++LE I RCPGKFK++EHSVA HS+KV A+ +EE+ G ++W+ L Sbjct: 1 MGIHQYFQSLSDLENIYRCPGKFKYQEHSVAEHSYKVTSIAQFFGAVEEEAGNEVNWRAL 60 Query: 61 YEITSSHDYGEIFIGDIKTPVKHSSLQLRSLIQQVEEGMIDNFIKEHIPEEFKSIFYHQL 120 YE +HDY E+FIGDIKTPVK+++ +LR ++ +VEE M NFI+ IPE ++ I+ H L Sbjct: 61 YEKALNHDYSELFIGDIKTPVKYATTELREMLSEVEESMTKNFIEREIPETYQPIYRHLL 120 Query: 121 REGKDESLEGLILEVADKMDQVYEAFAELQRGNTEKEFVVMYRNALIKIKNI-ELKCVEY 179 +EGKD +LEG IL ++DK+D +YE+F E+Q+GN E FV +Y AL I E+ V+Y Sbjct: 121 KEGKDSTLEGKILAISDKVDLLYESFGEIQKGNPENIFVEIYSEALATIYEYREMASVKY 180 Query: 180 FLTEILPDMVNEETISSIDIRQITEE 205 FL EILPDM+ E+ I ++ Q+T E Sbjct: 181 FLKEILPDMLAEKGIEKTELPQLTTE 206 >ref|NP_471964.1| lin2634 [Listeria innocua] pir||AE1761 hypothetical protein lin2634 [imported] - Listeria innocua (strain Clip11262) emb|CAC97861.1| lin2634 [Listeria innocua] Length = 215 Score = 224 bits (572), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 106/206 (51%), Positives = 146/206 (70%), Gaps = 1/206 (0%) Query: 1 MGIHKYFRSLNELERIIRCPGKFKFEEHSVAAHSWKVVQYAKTLADIEEQNGAVIDWKKL 60 MGIH+YF+SL++LE I RCPGKFK++EHSVA HS+KV A+ +EE G ++W+ L Sbjct: 1 MGIHQYFQSLSDLENIYRCPGKFKYQEHSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRAL 60 Query: 61 YEITSSHDYGEIFIGDIKTPVKHSSLQLRSLIQQVEEGMIDNFIKEHIPEEFKSIFYHQL 120 YE +HDY E+FIGDIKTPVK+++ +LR ++ +VEE M NFI IP F+ I+ H L Sbjct: 61 YEKALNHDYSELFIGDIKTPVKYATTELREMLSEVEESMTKNFISREIPATFQPIYRHLL 120 Query: 121 REGKDESLEGLILEVADKMDQVYEAFAELQRGNTEKEFVVMYRNALIKIKNI-ELKCVEY 179 +EGKD +LEG IL ++DK+D +YE+F E+Q+GN E FV +Y AL I E+ V+Y Sbjct: 121 KEGKDSTLEGKILAISDKVDLLYESFGEIQKGNPENIFVEIYSEALATIYEYREMASVKY 180 Query: 180 FLTEILPDMVNEETISSIDIRQITEE 205 FL EILPDM+ E+ I ++ Q+T E Sbjct: 181 FLKEILPDMLAEKGIEKTELPQLTTE 206 >ref|NP_764093.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gb|AAO04135.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] Length = 213 Score = 207 bits (528), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 99/204 (48%), Positives = 148/204 (72%), Gaps = 1/204 (0%) Query: 1 MGIHKYFRSLNELERIIRCPGKFKFEEHSVAAHSWKVVQYAKTLADIEEQNGAVIDWKKL 60 MG+H+YF+ L++LE++IR PGKFK+ EH+VAAHS+KV + A+ +A +EE +G IDWK L Sbjct: 1 MGMHQYFKRLSDLEKLIRLPGKFKYFEHNVAAHSFKVTKIAQYMATVEEYHGNKIDWKSL 60 Query: 61 YEITSSHDYGEIFIGDIKTPVKHSSLQLRSLIQQVEEGMIDNFIKEHIPEEFKSIFYHQL 120 YE + +HD+ E+F GDIKTPVK++S +L+ L QVEE M+D FIKE IP +++ ++ +L Sbjct: 61 YEKSLNHDFAEVFTGDIKTPVKYASKELKHLFSQVEEEMVDTFIKEEIPTQYQHVYRERL 120 Query: 121 REGKDESLEGLILEVADKMDQVYEAFAELQRGNTEKEFVVMYRNALIKIKNIE-LKCVEY 179 +EGKD+SLEG IL VADK+D +YE F E+Q+ N E F +Y +L I + L+ V+ Sbjct: 121 QEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEPLFFEIYEMSLETIIQFDHLESVKN 180 Query: 180 FLTEILPDMVNEETISSIDIRQIT 203 F+ ++P+M+ E I ++R+ T Sbjct: 181 FIENVIPEMLTENFIPRTELRETT 204 >ref|ZP_00064325.1| COG1896: Predicted hydrolases of HD superfamily [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 217 Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 97/195 (49%), Positives = 142/195 (72%), Gaps = 1/195 (0%) Query: 1 MGIHKYFRSLNELERIIRCPGKFKFEEHSVAAHSWKVVQYAKTLADIEEQNGAVIDWKKL 60 M +H+YF +++LE I R PG FK++ HSVAAHSWKV Q A+ LAD+EEQNGA I+WK + Sbjct: 1 MAMHQYFMGMSQLELINRAPGFFKYQPHSVAAHSWKVTQIAQFLADVEEQNGAQINWKSV 60 Query: 61 YEITSSHDYGEIFIGDIKTPVKHSSLQLRSLIQQVEEGMIDNFIKEHIPEEFKSIFYHQL 120 YE +HDY E FIGDIKTPVK+++ LRS++ VEE M +NFIK IPE+F++ + +L Sbjct: 61 YEKALNHDYTERFIGDIKTPVKYATSTLRSMLADVEESMTENFIKTEIPEQFQAAYTRRL 120 Query: 121 REGKDESLEGLILEVADKMDQVYEAFAELQRGNTEKEFVVMYRNALIKIKNI-ELKCVEY 179 EGKD+++EG IL ++DK+D +YEA+ EL++ N E FV +++++L + ++ V+Y Sbjct: 121 GEGKDDTIEGKILSISDKIDLLYEAYGELEKFNPEPVFVNIFQSSLEALAEFKDMASVKY 180 Query: 180 FLTEILPDMVNEETI 194 EILP++ E+ I Sbjct: 181 LAKEILPEVFKEDFI 195 >ref|NP_371280.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_373966.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] ref|NP_645535.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] pir||E89848 conserved hypothetical protein SA0711 [imported] - Staphylococcus aureus (strain N315) dbj|BAB41944.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] dbj|BAB56918.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] dbj|BAB94583.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] Length = 216 Score = 205 bits (522), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 98/204 (48%), Positives = 147/204 (72%), Gaps = 1/204 (0%) Query: 1 MGIHKYFRSLNELERIIRCPGKFKFEEHSVAAHSWKVVQYAKTLADIEEQNGAVIDWKKL 60 MG+H+YF+ L+++ER+IR PGKFK+ EH+VAAHS+KV + A+ LA +EE +G I+WK L Sbjct: 1 MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSL 60 Query: 61 YEITSSHDYGEIFIGDIKTPVKHSSLQLRSLIQQVEEGMIDNFIKEHIPEEFKSIFYHQL 120 YE +HD+ E+F GDIKTPVK++S +L+ L QVEE M++ FI+E IP +++ ++ +L Sbjct: 61 YEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRL 120 Query: 121 REGKDESLEGLILEVADKMDQVYEAFAELQRGNTEKEFVVMYRNALIKIKNIE-LKCVEY 179 +EGKD+SLEG IL VADK+D +YE F E+Q+ N E+ F +Y +L I + L V+ Sbjct: 121 QEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQD 180 Query: 180 FLTEILPDMVNEETISSIDIRQIT 203 F+ I+P+M+ E I ++R+ T Sbjct: 181 FINNIIPEMLTENFIPRTELRETT 204 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 297,098,607 Number of extensions: 11714112 Number of successful extensions: 34736 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 34741 Number of HSP's successfully gapped: 31 Length of query: 209 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 89 Effective length of database: 431,425,698 Effective search space: 38396887122 Effective search space used: 38396887122 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)