BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0009.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693011.1| hypothetical protein OB2090 [Oceanobacillus ihe... 260 4e-68 ref|ZP_00035516.1| COG4209: ABC-type polysaccharide transport sy... 259 7e-68 ref|NP_241350.1| transmembrane lipoprotein [Bacillus halodurans]... 254 3e-66 ref|NP_242777.1| transmembrane lipoprotein [Bacillus halodurans]... 251 1e-65 ref|NP_388592.1| transmembrane lipoprotein [Bacillus subtilis] >... 251 2e-65 >ref|NP_693011.1| hypothetical protein OB2090 [Oceanobacillus iheyensis HTE831] dbj|BAC14046.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 320 Score = 260 bits (664), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 131/306 (42%), Positives = 204/306 (66%), Gaps = 1/306 (0%) Query: 15 VATKKKNHFLHNLKRDSXXXXXXXXXXXXXXXXKYAPIYGLVMAFQDYNIFEGIKGSEWV 74 + +++ L N+K++ KY P+ GLV++FQDY + GI GSEWV Sbjct: 15 IKKSRRHEILKNIKKNKLIYLMILPGILYFFIYKYLPMTGLVISFQDYKPYLGISGSEWV 74 Query: 75 GLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGFPAPILLAILLNEVRQAAFKKVTQTVLY 134 G + F +F F+ +NTL+L L +I FP PI+++++LNEVR + +K+ QT++Y Sbjct: 75 GFEHFERLFTSPDFWMIFRNTLILFALQIIIFFPIPIIISLMLNEVRHSLYKRGIQTLIY 134 Query: 135 LPHFLSWVIIGGMVYLMFS-NSGMINNFLAGFGLDKIEFLSQKTPWLITYISVGVWQNIG 193 +PHF+SWV+I + Y+M + + G+IN+ + FG +KI FL + + YI +W+ G Sbjct: 135 IPHFMSWVVIVSISYVMLTLDGGIINSLIEYFGFEKINFLMNEEWFRPMYILQVIWREAG 194 Query: 194 WGTIIYLAAITGINKELYEASDIDGCSRLRQMWHITLPGIKSTINILLILQIGRMVSIGF 253 WGTII+LAAITG++ +LYEA+ +DG +RLRQMWHITLP I+S I I+LIL+IG ++ +GF Sbjct: 195 WGTIIFLAAITGVDPQLYEAAKMDGANRLRQMWHITLPAIRSVIIIMLILKIGDVLELGF 254 Query: 254 DRPFVMGNSLVNEYSDVISTFVYRVGISSGDFSQATAVGLFQSVVGLVLLLSANFIAKKL 313 + +++ N+ E ++ T+VY G+ G FS +TAVG F+ VVGL+L++ AN +AK+ Sbjct: 255 EHVYLLLNASNREVGEIFDTYVYTAGLQQGQFSYSTAVGFFKGVVGLILVIFANRLAKRF 314 Query: 314 GEDGIW 319 GE+GI+ Sbjct: 315 GEEGIY 320 >ref|ZP_00035516.1| COG4209: ABC-type polysaccharide transport system, permease component [Enterococcus faecium] Length = 324 Score = 259 bits (661), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 125/273 (45%), Positives = 187/273 (68%), Gaps = 1/273 (0%) Query: 48 KYAPIYGLVMAFQDYNIFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGF 107 +Y P+ GLV+AFQDY F GI GS WVG F +F + +F+ L+NTL+L L++ F Sbjct: 52 RYLPMGGLVIAFQDYQPFLGIMGSPWVGFKHFIRLFTEPTFFTLLRNTLILFGLNIFVFF 111 Query: 108 PAPILLAILLNEVRQAAFKKVTQTVLYLPHFLSWVIIGGMVYLMFS-NSGMINNFLAGFG 166 P PI+L++LLNEV K QT++Y+PHF+SWVII + Y+ + + G++N FLA G Sbjct: 112 PMPIILSLLLNEVTNKRLKNGIQTIIYIPHFMSWVIIVSITYVFLNVDGGVLNEFLATMG 171 Query: 167 LDKIEFLSQKTPWLITYISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMW 226 +KI FL+ YI +W+ +GW TIIYL+AIT ++ +LYEA+++DG RLR+ W Sbjct: 172 FEKISFLTSPEWTRTVYIGQVIWKELGWSTIIYLSAITAVDTQLYEAAEMDGAGRLRKTW 231 Query: 227 HITLPGIKSTINILLILQIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFS 286 H+TLP I+ I LLIL+IG+ + +GF+ +++ NSL +++ T++Y G+ +G S Sbjct: 232 HVTLPAIRPVIITLLILKIGQTLDLGFEHMYLLLNSLNRSVAEIFDTYIYTAGLKNGQLS 291 Query: 287 QATAVGLFQSVVGLVLLLSANFIAKKLGEDGIW 319 +TA+GLF+ VVGL +++ AN IAKKLGEDG++ Sbjct: 292 FSTAMGLFKGVVGLFMVILANKIAKKLGEDGVY 324 >ref|NP_241350.1| transmembrane lipoprotein [Bacillus halodurans] pir||D83710 transmembrane lipoprotein BH0484 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04203.1| transmembrane lipoprotein [Bacillus halodurans] Length = 325 Score = 254 bits (648), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 126/273 (46%), Positives = 192/273 (70%), Gaps = 1/273 (0%) Query: 48 KYAPIYGLVMAFQDYNIFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGF 107 KY P++GL++AFQDY F G+ GSEWVG F +F + +F++ L+NTLVL + +LI F Sbjct: 53 KYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFF 112 Query: 108 PAPILLAILLNEVRQAAFKKVTQTVLYLPHFLSWVIIGGMVYLMFS-NSGMINNFLAGFG 166 P PI+LA+LLNE+R FK+ QT++Y+PHF+SWVI+ + Y++F+ + G+IN + Sbjct: 113 PVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSIT 172 Query: 167 LDKIEFLSQKTPWLITYISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMW 226 + FL + + YI +W+ GW TIIY AAI I+ LYEA+ +DG +R RQ+W Sbjct: 173 GKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIW 232 Query: 227 HITLPGIKSTINILLILQIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFS 286 HITLP I+S I +LLIL+IG ++ +GF+ F+M N++ E +++ T+VY G+ G FS Sbjct: 233 HITLPAIRSVIVVLLILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFS 292 Query: 287 QATAVGLFQSVVGLVLLLSANFIAKKLGEDGIW 319 +TAVG F+S+VGL++++ AN++AKK GE+G++ Sbjct: 293 YSTAVGFFKSIVGLIMVMLANWLAKKFGEEGVY 325 >ref|NP_242777.1| transmembrane lipoprotein [Bacillus halodurans] pir||G83888 transmembrane lipoprotein lplB [imported] - Bacillus halodurans (strain C-125) dbj|BAB05630.1| transmembrane lipoprotein [Bacillus halodurans] Length = 319 Score = 251 bits (642), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 127/319 (39%), Positives = 197/319 (61%), Gaps = 5/319 (1%) Query: 4 MKAVLDNSREYVATKKKNHFLHNLKRDSXXXXXXXXXXXXXXXXKYAPIYGLVMAFQDYN 63 M+ V + + + +++ L LK+ Y P++G MAFQ++ Sbjct: 1 METVKEKAHSKIRVQRRKKILTTLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFR 60 Query: 64 IFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGFPAPILLAILLNEVRQA 123 EWVGL F +F+ + FY L+NTL ++++ LI GF PIL A+LLNEVR Sbjct: 61 PGLSFFEQEWVGLQHFIELFQDNRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHM 120 Query: 124 AFKKVTQTVLYLPHFLSWVIIGGMVYLMFS-NSGMINNFLAGFGL--DKIEFLSQ-KTPW 179 FK+ QTV YLPHF+SWV++ G+V M S + G++N L FG ++F+++ + W Sbjct: 121 VFKRTVQTVSYLPHFVSWVVVAGIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFW 180 Query: 180 LITYISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMWHITLPGIKSTINI 239 +I +S +W+ +GW +II+LAA+ GI+ +LYEA+ +DG SR RQ+WHITLPGI+ TI + Sbjct: 181 VIVTLS-DLWKEMGWNSIIFLAAMAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILV 239 Query: 240 LLILQIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFSQATAVGLFQSVVG 299 +LIL IG +++IGF++ F++GN LV +YS+V+ + G+ G +S TA+G+F SVV Sbjct: 240 ILILSIGHLMAIGFEKQFLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVC 299 Query: 300 LVLLLSANFIAKKLGEDGI 318 ++LL AN I K+ + Sbjct: 300 IILLFLANGIFKRFTNQSV 318 >ref|NP_388592.1| transmembrane lipoprotein [Bacillus subtilis] sp|P39128|LPLB_BACSU LplB protein pir||A69653 transmembrane lipoprotein lplB - Bacillus subtilis emb|CAB12530.1| transmembrane lipoprotein [Bacillus subtilis subsp. subtilis str. 168] Length = 318 Score = 251 bits (640), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 133/317 (41%), Positives = 207/317 (65%), Gaps = 2/317 (0%) Query: 4 MKAVLDNSREYVATKKKN-HFLHNLKRDSXXXXXXXXXXXXXXXXKYAPIYGLVMAFQDY 62 M+ V V T K ++ LKRD KY P++G+++AF+DY Sbjct: 1 METVPKKRDAPVLTAGKGISWMAALKRDKWLYLLLIPGLLYFLIFKYLPMWGVLIAFKDY 60 Query: 63 NIFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGFPAPILLAILLNEVRQ 122 + + G SEWVG D F+ F F+R L+NTL+L LDL+ FPAP++LA+LLNEVR+ Sbjct: 61 SPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLLFAFPAPLILALLLNEVRK 120 Query: 123 AAFKKVTQTVLYLPHFLSWVIIGGMVYLMFS-NSGMINNFLAGFGLDKIEFLSQKTPWLI 181 A +K+ QT +Y+PHF+SW I+ + ++ F+ ++G+IN + ++I FLS + Sbjct: 121 AVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKLIMSLTGEQISFLSDADWFRP 180 Query: 182 TYISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMWHITLPGIKSTINILL 241 + +W+ GWGTI++LAA+ +++E YEA+ +DG R R+MWHITLP I+STI +LL Sbjct: 181 MIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFRRMWHITLPAIRSTIIVLL 240 Query: 242 ILQIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFSQATAVGLFQSVVGLV 301 IL+IG +++GF++ ++M NSL +D+ T+VY +GI+ G +S +TAVGLF+SVVG++ Sbjct: 241 ILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQGAYSYSTAVGLFKSVVGII 300 Query: 302 LLLSANFIAKKLGEDGI 318 L+ AN+IAKK ++G+ Sbjct: 301 LIFGANYIAKKFDQEGL 317 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 430,953,466 Number of extensions: 16943951 Number of successful extensions: 55987 Number of sequences better than 1.0e-05: 956 Number of HSP's gapped: 55577 Number of HSP's successfully gapped: 956 Length of query: 319 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 194 Effective length of database: 417,850,203 Effective search space: 81062939382 Effective search space used: 81062939382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)