BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0001.p (1026 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_812427.1| putatuve glycosylhydrolase [Bacteroides thetaio... 237 1e-60 ref|NP_242733.1| BH1867~unknown conserved protein [Bacillus halo... 229 3e-58 gb|EAJ00224.1| unknown [environmental sequence] 222 4e-56 gb|EAI26668.1| unknown [environmental sequence] 221 6e-56 ref|NP_822218.1| putative alpha-arabinofuranosidase II [Streptom... 221 9e-56 >ref|NP_812427.1| putatuve glycosylhydrolase [Bacteroides thetaiotaomicron VPI-5482] gb|AAO78621.1| putatuve glycosylhydrolase [Bacteroides thetaiotaomicron VPI-5482] Length = 389 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 130/340 (38%), Positives = 192/340 (56%), Gaps = 29/340 (8%) Query: 50 FYNVIMQVGADPWVYKHTDGFYYNVFVNASGIMVRRAKTITGIEAGERSLAWTPVNGTMY 109 + N +++ GA+PW H +G YY + + +++ IT + + W P + + Sbjct: 55 YTNPLLERGAEPWAIFH-EGKYYYTQGSENRVILWETDDITDLSHATQKDVWIPTDPSN- 112 Query: 110 SSNVWAPEMHYVQDTDGKFKWYIYFAADNGANANHRMYVLENANENPMTGTWAFKGKI-T 168 S ++WAPE+H + + KWYIYFAAD+G NH++YV+EN NPM GT+ KG+I T Sbjct: 113 SYHLWAPEIHRINN-----KWYIYFAADDGNMDNHQIYVVENEAANPMEGTFVMKGRIQT 167 Query: 169 DSTDRWAIDGTVLTVNGQHYFIWSGWEE--TDGSFQNLYIAKMSDPRTISSERVLISTPD 226 D + WAI + +GQ Y IW GW++ D Q +YIA M +P T+SS+R+LIS P+ Sbjct: 168 DKDNNWAIHASTFEHDGQRYMIWCGWQKRRIDSETQCIYIATMKNPWTLSSDRILISKPE 227 Query: 227 HDWETS-----------PGKINEGPQV--TIKGDTINLVYSANGSWTDSYCLGLITAKIG 273 ++WE P +NE PQ + D + YSA+GSWT YC+GL+TA Sbjct: 228 YEWECQWVNPDGSKTAYPIHVNEAPQYFESKNKDKACIFYSASGSWTPYYCVGLLTADAK 287 Query: 274 DDLMNPGSWVKQAQPIFSS--ANGVYGPGHHSIVASPDGAEDWIIYHAARW----PGSGW 327 +L+NP SW K P+ N VYGPG S SPDG E +++YHA + PG+ Sbjct: 288 ANLLNPASWKKSPVPVLQQDPENNVYGPGGISFTPSPDGKEWYMLYHARQIPNDAPGASD 347 Query: 328 TRKVHAQKFTWNEDNTPNLGEPADPNKPVAKPSGEPVRQR 367 +R QK W++D P LG P +P+A+PSG P+ ++ Sbjct: 348 SRSPRLQKIDWDKDGMPVLGTPQKEEEPMARPSGSPIHKK 387 >ref|NP_242733.1| BH1867~unknown conserved protein [Bacillus halodurans] pir||C83883 probable alpha-N-arabinofuranosidase (EC 3.2.1.55) BH1867 [similarity] - Bacillus halodurans (strain C-125) dbj|BAB05586.1| BH1867~unknown conserved protein [Bacillus halodurans] Length = 327 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 123/317 (38%), Positives = 175/317 (55%), Gaps = 25/317 (7%) Query: 50 FYNVIMQVGADPWVYKHTDGFYYNVFVNA----SGIMVRRAKTITGIEAGERSLAWTPVN 105 + N ++ ADPWVYKH DGFYY F + I +RRAKT+ G+ E + W + Sbjct: 8 YRNPFIEQRADPWVYKHADGFYY--FTGSVPAYDCIELRRAKTLDGLREAEPKVVWRKYD 65 Query: 106 GTMYSSNVWAPEMHYVQDTDGKFKWYIYFAADNGANA-----NHRMYVLENANENPMTGT 160 S+N+WAPE+HY++ KWYIYFAA A +HRM+VLEN + NP+ G+ Sbjct: 66 RGPMSANIWAPEIHYIEG-----KWYIYFAAARTAETKAGLFDHRMFVLENESANPLEGS 120 Query: 161 WAFKGKITDSTDRWAIDGTVLTVNGQHYFIWSGWEETDGSFQNLYIAKMSDPRTISSERV 220 W KG+I + +++D T G Y +W + + NLYIA+M +P TI E+V Sbjct: 121 WIEKGQIFTKWESFSLDATTFEHKGVRYLVWPQKDPSIEGNSNLYIAEMENPWTIKGEQV 180 Query: 221 LISTPDHDWETSPGKINEGPQVTIKGDTINLVYSANGSWTDSYCLGLITAKIGDDLMNPG 280 ++S P+ DWE K+NEGP V + + + YSA+ + YC+GL+ A DL++P Sbjct: 181 MLSKPEFDWEVIGYKVNEGPAVIKRNGKVFIAYSASAT-DHHYCMGLLWANEEADLLDPA 239 Query: 281 SWVKQAQPIF--SSANGVYGPGHHSIVASPDGAEDWIIYHAARW------PGSGWTRKVH 332 SW K P+F S NG YGPGH+S + DG D ++YHA + P R Sbjct: 240 SWTKSPTPVFQTSEENGQYGPGHNSFTVTEDGKHDVLVYHARSYKEIEGDPLYDPNRHAR 299 Query: 333 AQKFTWNEDNTPNLGEP 349 + FTW++D P GEP Sbjct: 300 LKLFTWDKDGFPQFGEP 316 >gb|EAJ00224.1| unknown [environmental sequence] Length = 634 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 196/382 (51%), Gaps = 21/382 (5%) Query: 48 ADFYNVIMQVGADPWVYKHTDGFYYNVFVNASGIMVRRAKTITGIEAGERSLAWTPVNGT 107 A F N + + GADPW+ H +Y S +++R++ TI G+ W+ + + Sbjct: 45 ATFANPLFRNGADPWLEYHNGNYYLTTTTWTSELVMRKSPTIAGLADAPAHNIWSGTDKS 104 Query: 108 MYSSNVWAPEMHYVQDTDGKFKWYIYFAADNGANAN-HRMYVLENANENPMTGTWAFKGK 166 N WA E H +Q T G +WY+ + + N + R ++LE+ +PM G + FKG Sbjct: 105 N-CCNFWAFEFHPLQTTQG-LRWYVIYTSGVAENFDGQRNHILESEGSDPM-GPYKFKG- 160 Query: 167 ITDSTDRWAIDGTVLTVNGQHYFIWSGWEETDGSFQNLYIAKMSDPRTISSERVLISTPD 226 T D W IDG+ L GQ YF+WS W D Q IAKM++P T+ E +I+ P Sbjct: 161 -TPMPDHWNIDGSYLEYKGQLYFLWSEWHGQD---QVNLIAKMTNPWTVEGEHKVITAPI 216 Query: 227 HDWETSPGKINEGPQVTIKGDTINLVYSANGSWTDSYCLGLITAKIGDDLMNPGSWVKQA 286 HDWE S +NEGP++ LV+SA+ T+ Y L ++ GDD M+P +W K Sbjct: 217 HDWEKSGLNVNEGPEIIQHEGRTFLVHSASFCNTEDYSLAVVEL-TGDDPMDPAAWTKYD 275 Query: 287 QPIFSSANGVYGPGHHSIVASPDGAEDWIIYH--AARWPGSGWTRKVHAQKFTWNEDNTP 344 +P FS ANGVYGPGHH SPDG EDW+IYH ++ G TR AQ FTW+ P Sbjct: 276 KPFFSKANGVYGPGHHGFFKSPDGKEDWLIYHGNSSASDGCSGTRAARAQPFTWDNKGLP 335 Query: 345 NLGEPADPNKPVAKPSGE--PVRQRYEAEEALLVKDPNGETFPAVRRESSASGGMKIANI 402 GEP K + PSGE P+ + E + +V G+ ++A G + + Sbjct: 336 KFGEPMADKKQLPVPSGEFGPITTQVEGVKYRIVSREVGQCLV-----TNAKGQVSVGKC 390 Query: 403 NNANDYAQFTVNVPEAGFYMMS 424 +D +Q+ ++ G Y + Sbjct: 391 E--DDNSQWVIDPSNDGLYRFA 410 >gb|EAI26668.1| unknown [environmental sequence] Length = 634 Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 135/382 (35%), Positives = 195/382 (51%), Gaps = 21/382 (5%) Query: 48 ADFYNVIMQVGADPWVYKHTDGFYYNVFVNASGIMVRRAKTITGIEAGERSLAWTPVNGT 107 A F N + + GADPW+ H +Y S +++R++ TI G+ W+ + + Sbjct: 45 ATFANPLFRNGADPWLEYHNGNYYLTTTTWTSELVMRKSPTIAGLADAPAHNIWSGTDKS 104 Query: 108 MYSSNVWAPEMHYVQDTDGKFKWYIYFAADNGANAN-HRMYVLENANENPMTGTWAFKGK 166 N WA E H +Q G +WY+ + + N + R ++LE+ +PM G + FKG Sbjct: 105 N-CCNFWAFEFHPLQTAQG-LRWYVIYTSGVAENFDGQRNHILESEGSDPM-GPYQFKG- 160 Query: 167 ITDSTDRWAIDGTVLTVNGQHYFIWSGWEETDGSFQNLYIAKMSDPRTISSERVLISTPD 226 T D W IDG+ L GQ YF+WS W D Q IAKMS+P T+ E +I+ P Sbjct: 161 -TPMPDHWNIDGSYLEYKGQLYFLWSEWHGQD---QVNLIAKMSNPWTVEGEHKVITAPI 216 Query: 227 HDWETSPGKINEGPQVTIKGDTINLVYSANGSWTDSYCLGLITAKIGDDLMNPGSWVKQA 286 HDWE S +NEGP++ LV+SA+ T+ Y L ++ GDD M+P +W K Sbjct: 217 HDWEKSGLNVNEGPEIIQHEGRTFLVHSASFCNTEDYSLAVVEL-TGDDPMDPAAWTKYD 275 Query: 287 QPIFSSANGVYGPGHHSIVASPDGAEDWIIYH--AARWPGSGWTRKVHAQKFTWNEDNTP 344 +P FS ANGVYGPGHH SPDG EDW+IYH ++ G TR AQ FTW+ P Sbjct: 276 KPFFSKANGVYGPGHHGFFKSPDGKEDWLIYHGNSSASDGCSGTRAARAQPFTWDNKGLP 335 Query: 345 NLGEPADPNKPVAKPSGE--PVRQRYEAEEALLVKDPNGETFPAVRRESSASGGMKIANI 402 GEP K + PSGE P+ + E + +V G+ ++A G + I Sbjct: 336 KFGEPMADKKQLPVPSGEFGPITTQVEGVKYRIVSREIGQCLV-----TNAKGQVSIGKC 390 Query: 403 NNANDYAQFTVNVPEAGFYMMS 424 +D +Q+ ++ G Y + Sbjct: 391 E--DDNSQWVIDPSNDGLYRFA 410 >ref|NP_822218.1| putative alpha-arabinofuranosidase II [Streptomyces avermitilis MA-4680] dbj|BAC68753.1| putative alpha-arabinofuranosidase II [Streptomyces avermitilis MA-4680] Length = 481 Score = 221 bits (562), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 127/320 (39%), Positives = 179/320 (55%), Gaps = 20/320 (6%) Query: 50 FYNVIMQVGADPWVYKHTDGFYY--NVFVNASGIMVRRAKTITGIEAGERSLAWTPVNGT 107 F N + + ADP ++KHTDG+YY I++RRA T+ G+ + WT Sbjct: 37 FTNPLAEKRADPHIFKHTDGYYYFTATVPEYDRIVLRRATTLQGLATAPETTIWTKHASG 96 Query: 108 MYSSNVWAPEMHYVQDTDGKFKWYIYFAADNGANA-NHRMYVLENANENPMTGTWAFKGK 166 + +++WAPE+H++ DGK WY+YFAA + ++ RMYVLE+ NP+TG+W KG+ Sbjct: 97 VMGAHIWAPEIHFI---DGK--WYVYFAAGSTSDVWAIRMYVLESGAANPLTGSWTEKGQ 151 Query: 167 ITDSTDRWAIDGTVLTVNGQHYFIWSGWEETDGSFQNLYIAKMSDPRTISSERVLISTPD 226 I +++D T VNG + W+ + + +L+IAKM++P TIS IS P Sbjct: 152 IATPVSSFSLDATTFVVNGVRHLAWAQRNPAEDNNTSLFIAKMANPWTISGTPTEISQPT 211 Query: 227 HDWETSPGKINEGPQVTIKGDTINLVYSANGSWTDS-YCLGLITAKIGDDLMNPGSWVKQ 285 WET K+NEGP V G + L YSA+ TD+ YCLG+++A DL+N SW K Sbjct: 212 LSWETVGYKVNEGPAVIQHGGKVFLTYSASA--TDANYCLGMLSASASADLLNAASWTKS 269 Query: 286 AQPIF--SSANGVYGPGHHSIVASPDGAEDWIIYHAARW------PGSGWTRKVHAQKFT 337 +QP+F S A G YGPGH+S S DG D ++YH + P + R+ QK Sbjct: 270 SQPVFKTSEATGQYGPGHNSFTVSEDGKSDILVYHDRNYKDISGDPLNDPNRRTRLQKVY 329 Query: 338 WNEDNTPNLGEP-ADPNKPV 356 WN D TPN G P AD PV Sbjct: 330 WNADGTPNFGIPVADGVTPV 349 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.131 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,581,012,033 Number of extensions: 69028615 Number of successful extensions: 124324 Number of sequences better than 1.0e-05: 55 Number of HSP's gapped: 124138 Number of HSP's successfully gapped: 56 Length of query: 1026 Length of database: 757,237,578 Length adjustment: 136 Effective length of query: 890 Effective length of database: 387,984,114 Effective search space: 345305861460 Effective search space used: 345305861460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)