BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0469.0004.p (165 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAA84431.1| unknown [environmental sequence] 170 1e-41 gb|EAD89035.1| unknown [environmental sequence] 161 4e-39 gb|EAE90578.1| unknown [environmental sequence] 158 3e-38 gb|EAE95286.1| unknown [environmental sequence] 157 8e-38 ref|NP_220593.1| MITOCHONDRIAL TRANSPORTER ATM1 PRECURSOR (atm1)... 155 2e-37 >gb|EAA84431.1| unknown [environmental sequence] Length = 196 Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 83/158 (52%), Positives = 111/158 (70%) Query: 1 VHQTPYLFNATFAENMLIANQAATEEEMIAICKQIKIHDYIMSLPHGYKTVIEENGANLS 60 V Q P LF+ + EN+L + ++EEE+I K +I LP+GY TVI ENG +LS Sbjct: 39 VSQEPILFDMSIKENILYSRPNSSEEEIINAAKSAAAESFISELPNGYDTVIGENGYSLS 98 Query: 61 GGQKQRIAIARAMLKKSKIILFDEATSSLDNETQQLVKELISSISHDHTVVVIAHRLSSI 120 GGQKQR++IARA LK + I+L DEATSSLD E++ LV+E I + D T +VIAHRLS+I Sbjct: 99 GGQKQRVSIARAFLKNAPILLLDEATSSLDTESESLVQEAIKKLMKDRTTLVIAHRLSTI 158 Query: 121 IDSDEILVIDAGKLVGQGSHRNLLNNNFTYKKLYESEL 158 I++D+I+V+D GK+V G+H LL+ N YKKLYE E Sbjct: 159 INADQIIVLDDGKIVESGTHEELLSKNGVYKKLYEREF 196 >gb|EAD89035.1| unknown [environmental sequence] Length = 225 Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 79/160 (49%), Positives = 114/160 (71%) Query: 1 VHQTPYLFNATFAENMLIANQAATEEEMIAICKQIKIHDYIMSLPHGYKTVIEENGANLS 60 V Q LF+ T N+ + A++EE+I K D++MS+P GY TVI ENG LS Sbjct: 66 VSQDISLFDDTIKNNIKYSRLTASDEEIIEAAKLSNCDDFVMSMPKGYDTVIGENGVRLS 125 Query: 61 GGQKQRIAIARAMLKKSKIILFDEATSSLDNETQQLVKELISSISHDHTVVVIAHRLSSI 120 GG+KQR++IARA+LK+SKIIL DEATSSLD ET+ +++ I+ ++ + T +VIAHRLS+I Sbjct: 126 GGEKQRLSIARAILKRSKIILLDEATSSLDAETEDKIQKAINYLTKNKTTIVIAHRLSTI 185 Query: 121 IDSDEILVIDAGKLVGQGSHRNLLNNNFTYKKLYESELEC 160 ++SD+I VID+GK+V +G+H LLN + YK Y+ +L+ Sbjct: 186 LNSDKIYVIDSGKVVAEGNHNELLNTSSIYKNFYDKQLKS 225 >gb|EAE90578.1| unknown [environmental sequence] Length = 270 Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 79/159 (49%), Positives = 112/159 (70%) Query: 1 VHQTPYLFNATFAENMLIANQAATEEEMIAICKQIKIHDYIMSLPHGYKTVIEENGANLS 60 V Q LF+ T N+ + A+ EE+I K D++ S+P GY TVI ENG LS Sbjct: 111 VSQDISLFDDTIKNNIKYSRLTASNEEIIEAAKLSNCDDFVKSMPKGYDTVIGENGVRLS 170 Query: 61 GGQKQRIAIARAMLKKSKIILFDEATSSLDNETQQLVKELISSISHDHTVVVIAHRLSSI 120 GG+KQR++IARA+LKKSKIIL DEATSSLD ET+ +++ I+ ++ + T +VIAHRLS+I Sbjct: 171 GGEKQRLSIARAILKKSKIILLDEATSSLDAETEDKIQKAINYLTKNKTTIVIAHRLSTI 230 Query: 121 IDSDEILVIDAGKLVGQGSHRNLLNNNFTYKKLYESELE 159 ++SD+I VID+GK+V +G+H LLN + YK Y+ +L+ Sbjct: 231 LNSDKIYVIDSGKVVAEGNHNELLNTSSIYKNFYDKQLK 269 >gb|EAE95286.1| unknown [environmental sequence] Length = 229 Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 77/159 (48%), Positives = 113/159 (71%) Query: 1 VHQTPYLFNATFAENMLIANQAATEEEMIAICKQIKIHDYIMSLPHGYKTVIEENGANLS 60 V Q LF+ T N+ AN+ AT+EE+ + K ++I +LP+ + T+I ENG LS Sbjct: 70 VSQETTLFDDTILNNIKYANENATDEEVFEVAKLSYCDEFINNLPNKFDTLIGENGVRLS 129 Query: 61 GGQKQRIAIARAMLKKSKIILFDEATSSLDNETQQLVKELISSISHDHTVVVIAHRLSSI 120 GG+KQR++IARAMLKKS +IL DEATSSLD+ET+ ++E + ++ + T +VIAHRLS+I Sbjct: 130 GGEKQRLSIARAMLKKSSVILLDEATSSLDSETEAKIQEALKILTENKTTIVIAHRLSTI 189 Query: 121 IDSDEILVIDAGKLVGQGSHRNLLNNNFTYKKLYESELE 159 ++S+ I VID GK+VG G H +L+NN+ YK YE +++ Sbjct: 190 LNSNNIYVIDNGKVVGSGKHESLINNSKLYKNFYEKQIQ 228 >ref|NP_220593.1| MITOCHONDRIAL TRANSPORTER ATM1 PRECURSOR (atm1) [Rickettsia prowazekii] pir||G71731 mitochondrial transporter atm1 precursor (atm1) RP205 - Rickettsia prowazekii emb|CAA14670.1| MITOCHONDRIAL TRANSPORTER ATM1 PRECURSOR (atm1) [Rickettsia prowazekii] Length = 609 Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/163 (48%), Positives = 111/163 (68%), Gaps = 1/163 (0%) Query: 1 VHQTPYLFNATFAENMLIANQAATEEEMIAICKQIKIHDYIMSLPHGYKTVIEENGANLS 60 V Q LFN T N+ N AA+ +E+IA K IH++I LP GY T + E G LS Sbjct: 435 VPQDTVLFNDTIYYNIAYGNNAASYDEVIAASKNAHIHEFISVLPEGYATQVGERGLKLS 494 Query: 61 GGQKQRIAIARAMLKKSKIILFDEATSSLDNETQQLVKELISSISHDHTVVVIAHRLSSI 120 GG+KQRIAIAR +LK I +FDEATSSLD +T++L++ + IS +HT ++IAHRLS+I Sbjct: 495 GGEKQRIAIARTILKNPSIYVFDEATSSLDTKTEKLIQASLKEISANHTTLIIAHRLSTI 554 Query: 121 IDSDEILVIDAGKLVGQGSHRNLLNNNFTYKKL-YESELECRE 162 +D+DEI+V+D G +V +G+H+ LL N Y +L Y+ + EC + Sbjct: 555 VDADEIIVLDNGYIVERGNHKTLLKNQGYYAELWYKQQEECNQ 597 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.132 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 226,147,442 Number of extensions: 8177394 Number of successful extensions: 59716 Number of sequences better than 1.0e-05: 9565 Number of HSP's gapped: 60250 Number of HSP's successfully gapped: 10254 Length of query: 165 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 49 Effective length of database: 442,286,094 Effective search space: 21672018606 Effective search space used: 21672018606 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)