BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0468.0002.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00154858.1| COG4185: Uncharacterized protein conserved in... 145 8e-34 ref|NP_439549.2| hypothetical protein HI1395 [Haemophilus influe... 117 1e-25 ref|NP_758993.1| unknown [Zymomonas mobilis] >gi|26983936|gb|AAL... 117 2e-25 sp|P44173|YD95_HAEIN Hypothetical protein HI1395 >gi|1074752|pir... 117 2e-25 ref|NP_348119.1| Predicted ATPase [Clostridium acetobutylicum] >... 108 1e-22 >ref|ZP_00154858.1| COG4185: Uncharacterized protein conserved in bacteria [Haemophilus influenzae R2846] Length = 197 Score = 145 bits (365), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 114/180 (63%), Gaps = 1/180 (0%) Query: 33 FAGTNGAGKSTLSMQMKSWLGELVDPDQIARELKPDNPRGADLSAGREAVRRIRSLIKQA 92 + GTNG+GKSTL + + ++D D IA ++ P NPR AD+ A R+A+ R IKQ Sbjct: 8 YCGTNGSGKSTLRSFNQDTVQIVIDSDHIAMQINPQNPRLADIDADRKAIGLFRFAIKQH 67 Query: 93 QPFAIETTLSGTFVLKHMQIAKENGYEIVMYYIGLQDVQMHIDRVASRVEQGGHWIAEED 152 F++E+TLSG +++ M+ AKENG+ + + YIG+ V++++ RV +RV+ GGH+IAE+ Sbjct: 68 IDFSMESTLSGNSIIQRMKTAKENGFYVHLNYIGVNSVEINLARVKARVKSGGHFIAEDV 127 Query: 153 IRWRYGQSLQNLTPALAIADQVIIIDN-TYEPTIVAEIKHNNMVYCVENVPAWSAAIVSG 211 +R RY SL NL L D++ I DN + P ++ ++K N + E +P+W I++ Sbjct: 128 VRNRYQISLDNLFLVLPYCDEIFIYDNSSIAPELIFQLKDNCITQFSEFLPSWCEKILNN 187 >ref|NP_439549.2| hypothetical protein HI1395 [Haemophilus influenzae Rd KW20] Length = 132 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 53/125 (42%), Positives = 86/125 (68%) Query: 33 FAGTNGAGKSTLSMQMKSWLGELVDPDQIARELKPDNPRGADLSAGREAVRRIRSLIKQA 92 + GTNG+GKSTL + + ++D D IA ++ P NPR AD+ AGR+A+ IKQ Sbjct: 8 YCGTNGSGKSTLRSFNQDAVQIVIDSDHIAMQINPQNPRLADIDAGRKAIGLFHFAIKQH 67 Query: 93 QPFAIETTLSGTFVLKHMQIAKENGYEIVMYYIGLQDVQMHIDRVASRVEQGGHWIAEED 152 F +E+TLSG +++ M+ AKENG+ + + YIG+ V++++ R+ +RV+ GGH+IAE+ Sbjct: 68 IGFPMESTLSGNSIIQRMKTAKENGFYVHLNYIGINRVEINLARIKARVKSGGHFIAEDI 127 Query: 153 IRWRY 157 +++RY Sbjct: 128 VKYRY 132 >ref|NP_758993.1| unknown [Zymomonas mobilis] gb|AAL36128.1| unknown [Zymomonas mobilis] Length = 193 Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 106/180 (58%), Gaps = 3/180 (1%) Query: 28 PVMTVFAGTNGAGKSTLSMQMKSWLGELVDPDQIARELKPD--NPRGADLSAGREAVRRI 85 P + +FAG NG GKSTL+ + + E+++PD IA E+ P+ P AGR A+ R Sbjct: 4 PHLWIFAGPNGGGKSTLAQRYVARKIEIINPDNIALEIAPNQQTPPATASKAGRIAIERR 63 Query: 86 RSLIKQAQPFAIETTLSGTFVLKHMQIAKENGYEIVMYYIGLQDVQMHIDRVASRVEQGG 145 +L+K Q FAIETTLSG M+ A + G++I + ++G+ V RVA R+ +GG Sbjct: 64 HALLKLGQSFAIETTLSGQGECAFMKDALDRGFKINLVFVGVSSVLQSRSRVAERILRGG 123 Query: 146 HWIAEEDIRWRYGQSLQNLTPALAIADQVIIIDNTYEPT-IVAEIKHNNMVYCVENVPAW 204 H + DI R+G+S+ +L A+ IA +V+++DN+ + ++ ++ + + ++P W Sbjct: 124 HAVPPADIEQRFGRSMTHLVQAIQIAHRVLLLDNSSKRLRLLVSCENGRVKHISAHLPRW 183 >sp|P44173|YD95_HAEIN Hypothetical protein HI1395 pir||C64027 hypothetical protein HI1395 - Haemophilus influenzae (strain Rd KW20) gb|AAC23049.1| H. influenzae predicted coding region HI1395 [Haemophilus influenzae Rd] Length = 140 Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 53/125 (42%), Positives = 86/125 (68%) Query: 33 FAGTNGAGKSTLSMQMKSWLGELVDPDQIARELKPDNPRGADLSAGREAVRRIRSLIKQA 92 + GTNG+GKSTL + + ++D D IA ++ P NPR AD+ AGR+A+ IKQ Sbjct: 16 YCGTNGSGKSTLRSFNQDAVQIVIDSDHIAMQINPQNPRLADIDAGRKAIGLFHFAIKQH 75 Query: 93 QPFAIETTLSGTFVLKHMQIAKENGYEIVMYYIGLQDVQMHIDRVASRVEQGGHWIAEED 152 F +E+TLSG +++ M+ AKENG+ + + YIG+ V++++ R+ +RV+ GGH+IAE+ Sbjct: 76 IGFPMESTLSGNSIIQRMKTAKENGFYVHLNYIGINRVEINLARIKARVKSGGHFIAEDI 135 Query: 153 IRWRY 157 +++RY Sbjct: 136 VKYRY 140 >ref|NP_348119.1| Predicted ATPase [Clostridium acetobutylicum] pir||H97083 probable ATPase [imported] - Clostridium acetobutylicum gb|AAK79459.1| Predicted ATPase [Clostridium acetobutylicum] Length = 187 Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 104/182 (57%), Gaps = 3/182 (1%) Query: 31 TVFAGTNGAGKSTL--SMQMKSWLGE-LVDPDQIARELKPDNPRGADLSAGREAVRRIRS 87 T+FAG NG GK+++ S+ + E ++ D++ ++ + + R+AVRRI Sbjct: 5 TIFAGVNGVGKTSIYESIYYRENKNEKRINTDEMVAKIGSWHDNALQIKCARQAVRRINC 64 Query: 88 LIKQAQPFAIETTLSGTFVLKHMQIAKENGYEIVMYYIGLQDVQMHIDRVASRVEQGGHW 147 I+ F ETTLSG ++KH++ AK+ G+ I+M +I + +VQ+ +RV RV +GGH Sbjct: 65 YIRNDVSFNQETTLSGKSIVKHIKKAKQRGFYIIMNFICVDNVQIAKERVKLRVLKGGHG 124 Query: 148 IAEEDIRWRYGQSLQNLTPALAIADQVIIIDNTYEPTIVAEIKHNNMVYCVENVPAWSAA 207 I E+ I RY +SL+NL + +++ I DNT + +A + +++ +P WS Sbjct: 125 IEEDTIERRYYKSLENLKKVFHLCNEINIYDNTDKFKHIAYVCDGVIIWKRSFIPEWSRD 184 Query: 208 IV 209 I+ Sbjct: 185 IL 186 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 306,186,002 Number of extensions: 11710756 Number of successful extensions: 44716 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 44697 Number of HSP's successfully gapped: 20 Length of query: 212 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 92 Effective length of database: 431,425,698 Effective search space: 39691164216 Effective search space used: 39691164216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)