BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0462.0012.p
         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_390641.1| yrvD [Bacillus subtilis] >gi|7475365|pir||G6998...    79   2e-14
ref|NP_470897.1| similar to unknown proteins [Listeria innocua] ...    76   2e-13
ref|NP_242105.1| BH1239~unknown conserved protein in B. subtilis...    66   3e-10
ref|ZP_00098786.1| hypothetical protein [Desulfitobacterium hafn...    62   3e-09
ref|ZP_00180951.1| hypothetical protein Mther101401 [Moorella th...    62   5e-09

>ref|NP_390641.1| yrvD [Bacillus subtilis]
 pir||G69980 hypothetical protein yrvD - Bacillus subtilis
 emb|CAB14722.1| yrvD [Bacillus subtilis subsp. subtilis str. 168]
          Length = 107

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 52/74 (70%)

Query: 2  QWSLILGLIFALLTAVFAVINVDPVEVNFYFDVVSIPLILVILGCALIGGVIVGSYGIFR 61
          QW++I  LIF L+ A+FAVINV  VEV++ F     PLILVILG  L+G +IV S GIF+
Sbjct: 4  QWTIIFALIFTLIVAIFAVINVRSVEVDYLFGRSEWPLILVILGSVLMGALIVFSVGIFQ 63

Query: 62 QYKLQKQIKGLTAE 75
            KL+++IK L  E
Sbjct: 64 VMKLKREIKTLRKE 77


>ref|NP_470897.1| similar to unknown proteins [Listeria innocua]
 pir||AH1627 hypothetical protein homolog lin1561 [imported] - Listeria innocua
           (strain Clip11262)
 emb|CAC96792.1| lin1561 [Listeria innocua]
          Length = 114

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 3/106 (2%)

Query: 1   LQWSLILGLIFALLTAVFAVINVDPVEVNFYFDVVSIPLILVILGCALIGGVIVGSYGIF 60
           +QW +I+G+I AL+ A+FAVINVDPVEVNF F     PLIL+I+G  L+G +I+    I 
Sbjct: 6   VQWQVIVGIILALIIAIFAVINVDPVEVNFLFAQAEWPLILIIIGSVLVGCLIIFFLNIA 65

Query: 61  RQYKLQKQIKGLTAELNKLRD---AGNSLDAVSANPDSLSANSTTQ 103
           +   ++K++K LTAE  +L     A  S+   S+N +   A +T +
Sbjct: 66  KSRGMKKRVKQLTAEKTELERQLAAAKSMKTHSSNVEKRDAENTVE 111


>ref|NP_242105.1| BH1239~unknown conserved protein in B. subtilis [Bacillus
          halodurans]
 pir||G83804 hypothetical protein BH1239 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB04958.1| BH1239~unknown conserved protein in B. subtilis [Bacillus
          halodurans]
          Length = 105

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 2  QWSLILGLIFALLTAVFAVINVDPVEVNFYFDVVSIPLILVILGCALIGGVIVGSYGIFR 61
          QW LILGL+ AL+ AVFAVINVDPV+VN+ F     PLILVILG  L+G ++ G   I R
Sbjct: 4  QWGLILGLLAALIIAVFAVINVDPVQVNYLFGTAEWPLILVILGSVLMGSLMAGGLSIVR 63

Query: 62 QYKLQKQIKGL--TAELNKLRDAG 83
           Y+LQ +++ L  TA   + +  G
Sbjct: 64 IYQLQHEVRRLKGTARTKQPQQTG 87


>ref|ZP_00098786.1| hypothetical protein [Desulfitobacterium hafniense]
          Length = 114

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%)

Query: 5  LILGLIFALLTAVFAVINVDPVEVNFYFDVVSIPLILVILGCALIGGVIVGSYGIFRQYK 64
          LI  L+ AL  A+FAV N  PV +NF++ V  +PL+L+ILG AL G +IV    I+R+++
Sbjct: 4  LIFTLLVALFVAIFAVQNAAPVAINFFWYVAEVPLVLIILGAALAGALIVFFMAIWREFR 63

Query: 65 LQKQIKG 71
          L+  ++ 
Sbjct: 64 LKGTVRA 70


>ref|ZP_00180951.1| hypothetical protein Mther101401 [Moorella thermoacetica ATCC
          39073]
          Length = 108

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 6  ILGLIFALLTAVFAVINVDPVEVNFY-FDVVSIPLILVILGCALIGGVIVGSYGIFRQYK 64
          +L + FALL A+FAV N  PVE+NF  +   +I L+LVILG A  G ++V   G  RQ +
Sbjct: 9  LLAIFFALLVAIFAVQNAGPVEINFLAWQFSNISLVLVILGSAAFGALVVFLLGAVRQVR 68

Query: 65 LQKQIKGLTAELNKLRDAGNSLDAVSANPDS 95
            ++I+ L ++  +L++    L+ V+A   +
Sbjct: 69 QAREIRELKSQHKRLQETIARLELVAAGKGA 99


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.324    0.141    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 141,538,610
Number of extensions: 4976193
Number of successful extensions: 20448
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 20447
Number of HSP's successfully gapped: 9
Length of query: 104
Length of database: 757,237,578
Length adjustment: 71
Effective length of query: 33
Effective length of database: 564,465,549
Effective search space: 18627363117
Effective search space used: 18627363117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)