BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0462.0008.p (163 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241345.1| BH0479~unknown conserved protein in others [Bac... 148 3e-35 ref|NP_832665.1| TPR-repeat-containing protein [Bacillus cereus ... 129 2e-29 ref|NP_979270.1| TPR domain protein [Bacillus cereus ATCC 10987]... 122 2e-27 ref|NP_656798.1| hypothetical protein predicted by GeneMark [Bac... 121 5e-27 ref|NP_901431.1| conserved hypothetical protein [Chromobacterium... 120 9e-27 >ref|NP_241345.1| BH0479~unknown conserved protein in others [Bacillus halodurans] pir||G83709 hypothetical protein BH0479 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04198.1| BH0479~unknown conserved protein in others [Bacillus halodurans] Length = 164 Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/163 (42%), Positives = 105/163 (64%) Query: 1 MNMTHSIETAVALRNAGKXXXXXXXXXXXXSGDEENAGLLYQLAWTHDVLGLEREAVPYY 60 M++ ++E A+ALR + + +LYQ W+ DVLGLE +AVPYY Sbjct: 1 MDVKQTLEKAIALRQNKRYQESNAILVTLCKEHAHDPQILYQCGWSFDVLGLEAQAVPYY 60 Query: 61 ERSLSLGLPPEQRMGAILGLGSTYRTLGEYPRSKEVLEQGVGEFPQQKEFQAFLAMTLHN 120 E++++ GL + LGLGST+RTLGEY +++ VL GV +FP + + F AM L+N Sbjct: 61 EKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN 120 Query: 121 LGEHSEAMKLLLTLVAETSSDEGIGSYRKAILYYSDKLEQVWE 163 LG + + ++LLL ++AETS DE I SY++AIL+Y+DKL++ W+ Sbjct: 121 LGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKLDETWK 163 >ref|NP_832665.1| TPR-repeat-containing protein [Bacillus cereus ATCC 14579] gb|AAP09866.1| TPR-repeat-containing protein [Bacillus cereus ATCC 14579] Length = 160 Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 99/162 (61%), Gaps = 4/162 (2%) Query: 2 NMTHSIETAVALRNAGKXXXXXXXXXXXXSGDEENAGLLYQLAWTHDVLGLEREAVPYYE 61 +M H ++ A+ LRN K + ++A +LYQ AW HDV+GLE EAVPYYE Sbjct: 3 SMEHLLKQAIKLRNE-KKYAQSKEMLIGLTNFTKDAEVLYQCAWIHDVMGLETEAVPYYE 61 Query: 62 RSLSLGLPPEQRMGAILGLGSTYRTLGEYPRSKEVLEQGVGEFPQQKEFQAFLAMTLHNL 121 ++++ GL E GA +GLGSTYR +GEY ++ VLE GV +FP+ + FL++ +N+ Sbjct: 62 QAIANGLDGESLCGAYIGLGSTYRCIGEYEKAITVLEAGVKKFPENAPMKVFLSLAKYNV 121 Query: 122 GEHSEAMKLLLTLVAETSSDEGIGSYRKAILYYSDKLEQVWE 163 +H AMKLLL V + E + + +AI +Y D L +V++ Sbjct: 122 NDHESAMKLLLETVVKV---EEVKEFERAISFYKDHLNEVFK 160 >ref|NP_979270.1| TPR domain protein [Bacillus cereus ATCC 10987] gb|AAS41878.1| TPR domain protein [Bacillus cereus ATCC 10987] Length = 157 Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 95/161 (59%), Gaps = 4/161 (2%) Query: 3 MTHSIETAVALRNAGKXXXXXXXXXXXXSGDEENAGLLYQLAWTHDVLGLEREAVPYYER 62 M H ++ A+ LR K + +A +LYQ AW HDV+GLE EA+PYYE+ Sbjct: 1 MEHLLKQAIKLRKE-KKYAQSKEILIGLTNFTRDAEVLYQCAWIHDVMGLETEAMPYYEQ 59 Query: 63 SLSLGLPPEQRMGAILGLGSTYRTLGEYPRSKEVLEQGVGEFPQQKEFQAFLAMTLHNLG 122 +++ GL E GA +GLGSTYR +GEY ++ VLE G+ +FP + FL++ +N+ Sbjct: 60 AIANGLEGESLCGAYIGLGSTYRCIGEYDKAITVLETGLQQFPDNDVMKVFLSLAKYNVN 119 Query: 123 EHSEAMKLLLTLVAETSSDEGIGSYRKAILYYSDKLEQVWE 163 +H AMKLLL V + E + + +AI +Y D L +V++ Sbjct: 120 DHESAMKLLLETVVKV---EEVKEFERAISFYKDHLNEVFK 157 >ref|NP_656798.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_845264.1| TPR domain protein [Bacillus anthracis str. Ames] gb|AAP26750.1| TPR domain protein [Bacillus anthracis str. Ames] Length = 157 Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 4/161 (2%) Query: 3 MTHSIETAVALRNAGKXXXXXXXXXXXXSGDEENAGLLYQLAWTHDVLGLEREAVPYYER 62 M H ++ A+ LR K + +A +LYQ AW HDV+GLE EA+PYYE+ Sbjct: 1 MEHLLKQAIKLRKE-KKYAQSKEILIGLTNFTRDAEVLYQCAWIHDVMGLETEAMPYYEQ 59 Query: 63 SLSLGLPPEQRMGAILGLGSTYRTLGEYPRSKEVLEQGVGEFPQQKEFQAFLAMTLHNLG 122 +++ GL E GA +GLGSTYR +GEY ++ VLE G+ +FP + FL++ N+ Sbjct: 60 AIANGLEGESLCGAYIGLGSTYRCIGEYDKAITVLETGLQQFPDNDVMKVFLSLAKFNVN 119 Query: 123 EHSEAMKLLLTLVAETSSDEGIGSYRKAILYYSDKLEQVWE 163 +H AMKLLL V + E + + +AI +Y D L +V++ Sbjct: 120 DHESAMKLLLETVVKV---EEVKEFERAISFYKDHLNEVFK 157 >ref|NP_901431.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] gb|AAQ59435.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 160 Score = 120 bits (302), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 93/157 (59%) Query: 6 SIETAVALRNAGKXXXXXXXXXXXXSGDEENAGLLYQLAWTHDVLGLEREAVPYYERSLS 65 ++E LR G+ ++A L Y A HD LGLE EA+P+Y+++L Sbjct: 4 ALENIQQLRRRGEHEAARRQALELLQHQPQHADLHYLAACIHDSLGLEAEAIPHYQQALE 63 Query: 66 LGLPPEQRMGAILGLGSTYRTLGEYPRSKEVLEQGVGEFPQQKEFQAFLAMTLHNLGEHS 125 LGL + A LGLGS++R LG + ++ L +GV FP+ + FLAM L+N G+H Sbjct: 64 LGLSGDTAAEAWLGLGSSHRALGRFDEAETALREGVQRFPEHHALRTFLAMALYNRGQHK 123 Query: 126 EAMKLLLTLVAETSSDEGIGSYRKAILYYSDKLEQVW 162 EA + LL L+A+ S+D GI +YR+AI +Y++ L++ W Sbjct: 124 EATQSLLALLADGSADNGIRAYRRAIRFYAEDLDRTW 160 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 215,327,272 Number of extensions: 8088170 Number of successful extensions: 13539 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 13561 Number of HSP's successfully gapped: 14 Length of query: 163 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 47 Effective length of database: 442,286,094 Effective search space: 20787446418 Effective search space used: 20787446418 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 121 (51.2 bits)