BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0462.0005.p (273 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00182459.1| hypothetical protein Exigu223501 [Exiguobacte... 105 1e-21 gb|EAK59218.1| unknown [environmental sequence] 79 7e-14 ref|NP_661529.1| membrane protein [Chlorobium tepidum TLS] >gi|2... 78 2e-13 gb|EAI17279.1| unknown [environmental sequence] 77 4e-13 ref|NP_242284.1| BH1418~unknown conserved protein in others [Bac... 75 2e-12 >ref|ZP_00182459.1| hypothetical protein Exigu223501 [Exiguobacterium sp. 255-15] Length = 259 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 89/198 (44%), Gaps = 28/198 (14%) Query: 69 KLHHENKAELEAAYDKTGRRDAGQVFANXXXXXXXXXXNAIYPLELWGYLFIGVMATVTS 128 KL K ++ +K G RD QV AN + + LF+ V+A + Sbjct: 62 KLGKRRKQSVDQIVEKDGPRDGWQVLANGGIAALASIGFSWTEHTSFLVLFLVVLAASNA 121 Query: 129 DTWATEIGTLAKKPPRSVLTGRILPPGTSGGVSXXXXXXXXXXXXXXXXX---------- 178 DTWA+EIG L+KK P + TGR +P GTSG VS Sbjct: 122 DTWASEIGPLSKKDPF-LFTGRRVPAGTSGAVSFLGTSATIVGALFIATAGDLLFDLPTG 180 Query: 179 SWLLRAASGMPEHPXXXXXXXXXXXXXXXXXXDSVLGATVQRMNRCTVCGREVEASRHCG 238 +WLL AA G+ D+V G TVQR RC VC +E E RH Sbjct: 181 TWLLIAAGGI-----------------IGSLLDTVFGGTVQRKFRCVVCSKETEKRRHHN 223 Query: 239 QPTVFARGWRWMNNDAVN 256 QPT++ +GW+W+ NDAVN Sbjct: 224 QPTLYLKGWKWLGNDAVN 241 >gb|EAK59218.1| unknown [environmental sequence] Length = 402 Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 13/232 (5%) Query: 25 YYKQSLSFSGMLAAIAMGTIYFGAGNAFWFGXXXXXXXXXXXXXKLHHENKAELEAAYDK 84 Y +SL+ +G++ A MG I FGAG W ++ + +K Sbjct: 169 YKLKSLNKNGVITAYIMGIIIFGAGGLKW-----ITPIVTFFVLSSIISKLSKSDNHLNK 223 Query: 85 TGRRDAGQVFANXXXXXXXXXXNAIYPLELWGYLFIGVMATVTSDTWATEIGTLAKKPPR 144 +RD QV AN N P E L++ V+A T+DTWA+EIG+ K P Sbjct: 224 GSKRDIIQVLANGGIATILALINFYEPNENLYILYLAVIAAATADTWASEIGSFNSKNPF 283 Query: 145 SVLTGRILPPGTSGGVSXXXXXXXXXXXXXXXXXSWLLRAASGMPEHPXXXXXXXXXXXX 204 ++ + GTSG +S ++ A+ GM Sbjct: 284 HIIRFTRVTKGTSGAISFIGTFGSILGA--------VVIASIGMIWDISLQLFYLIIITG 335 Query: 205 XXXXXXDSVLGATVQRMNRCTVCGREVEASRHCGQPTVFARGWRWMNNDAVN 256 DS++G ++Q +C+ C E +HC T+ G +++ND VN Sbjct: 336 SLGSLIDSLIGGSIQANFQCSKCNNLTEKRKHCNSTTLHISGIYYIDNDMVN 387 >ref|NP_661529.1| membrane protein [Chlorobium tepidum TLS] gb|AAM71871.1| membrane protein [Chlorobium tepidum TLS] Length = 477 Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 94/233 (40%), Gaps = 13/233 (5%) Query: 33 SGMLAAIAMGTIYFGAGNAFWFGXXXXXXXXXXXXXKLHHENKAELEAAYDKTGRRDAGQ 92 SG A +GT FG G W KL H+ KA+ + ++K +RDAGQ Sbjct: 226 SGATATFLLGTTIFGVGGMVWTVPMLTFYLLSSILSKLGHKRKAKFDLVFEKGSQRDAGQ 285 Query: 93 VFANXXXXXXXXXXNAIYPLELWGYLF---IGVMATVTSDTWATEIGTL-AKKPPRSVLT 148 V+AN IY L Y+F +G +A V +DTWATEIGT+ R + T Sbjct: 286 VYANGGVAWIMM---VIYSLTGDPYIFFAYLGTLAAVQADTWATEIGTMWPNAKARLITT 342 Query: 149 GRILPPGTSGGVSXXXXXXXXXXXXXXXXXSWLLRAASGMPEHPXXXXXXXXXXXXXXXX 208 + +P GTSGGVS + L+ S + + Sbjct: 343 FKDVPVGTSGGVSIPGTLASFLGSLLICSSAVLMN-VSWIDQVGIVTSLLVIGVSGLFAS 401 Query: 209 XXDSVLGATVQRMNRCTVCGREVE-----ASRHCGQPTVFARGWRWMNNDAVN 256 DS GATVQ + + E AS +G+ ++NND VN Sbjct: 402 LVDSFFGATVQAQYYDPIRQKVTERTHSIASDGSRVANELLKGYDFVNNDLVN 454 >gb|EAI17279.1| unknown [environmental sequence] Length = 239 Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 13/232 (5%) Query: 25 YYKQSLSFSGMLAAIAMGTIYFGAGNAFWFGXXXXXXXXXXXXXKLHHENKAELEAAYDK 84 Y +SL+ +G++ A MG I FGAG W ++ ++ +K Sbjct: 6 YKLKSLNKNGVITAYIMGIIIFGAGGLKWI-----TPIVTFFILSSIISKLSKSDSHLNK 60 Query: 85 TGRRDAGQVFANXXXXXXXXXXNAIYPLELWGYLFIGVMATVTSDTWATEIGTLAKKPPR 144 +RD QV AN N P E L++ V+A T+DTWA+EIG+ P Sbjct: 61 GSKRDIIQVLANGGIATILAIINFYEPNENLYILYLAVIAAATADTWASEIGSFNSSNPF 120 Query: 145 SVLTGRILPPGTSGGVSXXXXXXXXXXXXXXXXXSWLLRAASGMPEHPXXXXXXXXXXXX 204 ++ +P GTSG +S ++ A G+ Sbjct: 121 HLIRFTRVPKGTSGAISFIGTFGSILGA--------VVIALIGIIWDISLQLIYLIIITG 172 Query: 205 XXXXXXDSVLGATVQRMNRCTVCGREVEASRHCGQPTVFARGWRWMNNDAVN 256 DS++G ++Q +C+ C E HC T+ G +++ND VN Sbjct: 173 SLGSLIDSLIGGSIQANFQCSKCDNLTEKRTHCNSTTLHISGVYYIDNDMVN 224 >ref|NP_242284.1| BH1418~unknown conserved protein in others [Bacillus halodurans] pir||B83827 hypothetical protein BH1418 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05137.1| BH1418~unknown conserved protein in others [Bacillus halodurans] Length = 262 Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 90/233 (38%), Gaps = 7/233 (3%) Query: 25 YYKQSLSFSGMLAAIAMGTIYFGAGNAFWFGXXXXXXXXXXXXXKLHHENKA-ELEAAYD 83 Y + L+ SG ++A +G + + + E K E+ A Sbjct: 17 YKTKKLTLSGAISAFVVGALISFGLGFKGLLLLAIFFFTSGFWSRFYQERKENEITA--- 73 Query: 84 KTGRRDAGQVFANXXXXXXXXXXNAIYPLELWGYLFIGVMATVTSDTWATEIGTLAKKPP 143 K RD QV AN +I ++ F+ +A +DTWA+E+G LAK+ P Sbjct: 74 KGSTRDGWQVLANGGFAAICALLFSILQDPIYICGFVASLAAANADTWASEVGPLAKRRP 133 Query: 144 RSVLTGRILPPGTSGGVSXXXXXXXXXXXXXXXXXSWLLRAASGMPEHPXXXXXXXXXXX 203 ++ + + GTSG VS S +S H Sbjct: 134 IHIIKWKPVDAGTSGAVSAIGTAAAFAGSFIIVVVSIFFWWSSSFASH---HLLFSLTLA 190 Query: 204 XXXXXXXDSVLGATVQRMNRCTVCGREVEASRHCGQPTVFARGWRWMNNDAVN 256 D+++GAT Q + +C CG E E HC PT G R++NND VN Sbjct: 191 GFLGNLFDTLVGATGQVLYQCPRCGLETERKIHCNGPTEKKYGLRFLNNDTVN 243 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.135 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 273,985,830 Number of extensions: 7541942 Number of successful extensions: 12515 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 12522 Number of HSP's successfully gapped: 16 Length of query: 273 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 149 Effective length of database: 420,565,302 Effective search space: 62664229998 Effective search space used: 62664229998 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)