BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0462.0004.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00098515.1| COG0179: 2-keto-4-pentenoate hydratase/2-oxoh... 227 1e-58 ref|NP_241937.1| BH1071~unknown conserved protein in others [Bac... 222 3e-57 ref|NP_274357.1| isomerase, putative [Neisseria meningitidis MC5... 159 5e-38 ref|NP_284267.1| putative hydrolase [Neisseria meningitidis Z249... 155 4e-37 ref|NP_902458.1| probable isomerase [Chromobacterium violaceum A... 155 4e-37 >ref|ZP_00098515.1| COG0179: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Desulfitobacterium hafniense] Length = 214 Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 103/203 (50%), Positives = 142/203 (69%) Query: 5 VNNIYCVGRNYRQHAEELGNKVPSEPLVFLKPSHAAVPLDKAIIQLPKDAGLIHYEGEIV 64 + NIYCVGRNY QHA+EL N VP+ P +F+KP+HA V I +PKD G +HYE E+V Sbjct: 11 IKNIYCVGRNYLQHAKELNNAVPTSPFLFVKPTHALVEGQGQTIAMPKDQGNVHYEAELV 70 Query: 65 LRIARDYVPGMSVQELVDVMALGLDFTLRDIHNDLQKKGLPWTPAKGFKNAAPLTPYIAF 124 + + ++Y PGM + ++D +A+G+DFTLR++ ++L+KKGLPW AKGF N+A L+ ++ F Sbjct: 71 VHVGKNYEPGMKAEAVIDKIAVGIDFTLREVQDELKKKGLPWLLAKGFPNSAVLSRWLPF 130 Query: 125 PETEELEATDYTVRKNGVEVQRGNVKNMIFSLQKIVDFIAARYGLGKDDLIFTGTPAGVG 184 E D+T+ KNG EVQRGN+K MIF + I++F A +GL + D+IFTGTPAGVG Sbjct: 131 EGLEGTAGHDFTLEKNGQEVQRGNIKEMIFDIPTIIEFCAQHFGLAEGDIIFTGTPAGVG 190 Query: 185 PVASGDSFELFWGETLLGTCLIG 207 A+GD F L W E +G IG Sbjct: 191 VAAAGDHFVLKWKEEQVGELFIG 213 >ref|NP_241937.1| BH1071~unknown conserved protein in others [Bacillus halodurans] pir||G83783 hypothetical protein BH1071 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04790.1| BH1071~unknown conserved protein in others [Bacillus halodurans] Length = 206 Score = 222 bits (566), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 99/194 (51%), Positives = 142/194 (73%) Query: 4 DVNNIYCVGRNYRQHAEELGNKVPSEPLVFLKPSHAAVPLDKAIIQLPKDAGLIHYEGEI 63 D+ NIYC+GRNY HA ELGN +P +P++F KP+H+ + +++ P + G IH+E EI Sbjct: 2 DIRNIYCIGRNYADHARELGNAIPDKPILFSKPTHSLTIANGQMLEFPSNRGEIHHELEI 61 Query: 64 VLRIARDYVPGMSVQELVDVMALGLDFTLRDIHNDLQKKGLPWTPAKGFKNAAPLTPYIA 123 VL I + Y G+S++ELVDVMALG+DFTLRD N+L+KKG PW AKGFK+AA +T + + Sbjct: 62 VLHIGKPYEKGISLEELVDVMALGIDFTLRDEQNELKKKGHPWLRAKGFKHAAVVTDFWS 121 Query: 124 FPETEELEATDYTVRKNGVEVQRGNVKNMIFSLQKIVDFIAARYGLGKDDLIFTGTPAGV 183 FP E +ATD+++ + VQ+GN++ M+FS +++V+ + +GLG+ DL+FTGTP GV Sbjct: 122 FPGEETCKATDFSLLIHDQVVQKGNIQQMLFSFEQMVEEVGEAFGLGEGDLLFTGTPEGV 181 Query: 184 GPVASGDSFELFWG 197 GP+ SGD LFWG Sbjct: 182 GPIQSGDQLSLFWG 195 >ref|NP_274357.1| isomerase, putative [Neisseria meningitidis MC58] pir||B81094 isomerase, probable NMB1338 [imported] - Neisseria meningitidis (strain MC58 serogroup B) gb|AAF41713.1| isomerase, putative [Neisseria meningitidis MC58] Length = 218 Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 81/194 (41%), Positives = 124/194 (63%), Gaps = 4/194 (2%) Query: 4 DVNNIYCVGRNYRQHAEELGNKVPSEPLVFLKPSHAAVPLDKAIIQLPKDAGLIHYEGEI 63 +V NI+C+GRNY H EEL N++PSEP+VF+KPS ++ I LP+ + + +E E+ Sbjct: 12 EVGNIFCIGRNYAAHIEELKNEIPSEPVVFMKPS-GSILNSGGTILLPEFSRDVQFECEL 70 Query: 64 VLRIARDY---VPGMSVQELVDVMALGLDFTLRDIHNDLQKKGLPWTPAKGFKNAAPLTP 120 VL + +D G + V +GLD T RDI L++KGLPW AKGF+++A ++ Sbjct: 71 VLLVGKDSDGTGEGKDILGCVAGYGVGLDLTARDIQCRLKEKGLPWLKAKGFRHSACVSD 130 Query: 121 YIAFPETEELEATDYTVRKNGVEVQRGNVKNMIFSLQKIVDFIAARYGLGKDDLIFTGTP 180 + A E +++++NGV QRG+ MI+ +++I+ +AA YGLGK DL+FTGTP Sbjct: 131 FAAAGRIGNPEKVLFSLKQNGVLKQRGDTGLMIYPIREILHKLAADYGLGKGDLVFTGTP 190 Query: 181 AGVGPVASGDSFEL 194 +GVG + +GD+ L Sbjct: 191 SGVGAIGAGDNLAL 204 >ref|NP_284267.1| putative hydrolase [Neisseria meningitidis Z2491] pir||C81847 probable hydrolase NMA1552 [imported] - Neisseria meningitidis (strain Z2491 serogroup A) emb|CAB84779.1| putative hydrolase [Neisseria meningitidis Z2491] Length = 218 Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 80/194 (41%), Positives = 123/194 (63%), Gaps = 4/194 (2%) Query: 4 DVNNIYCVGRNYRQHAEELGNKVPSEPLVFLKPSHAAVPLDKAIIQLPKDAGLIHYEGEI 63 +V NI+C+GRNY H EEL N++PSEP+VF+KPS ++ I LP+ + + +E E+ Sbjct: 12 EVGNIFCIGRNYAAHIEELKNEIPSEPVVFMKPS-GSILNSGGTILLPEFSRDVQFECEL 70 Query: 64 VLRIARDY---VPGMSVQELVDVMALGLDFTLRDIHNDLQKKGLPWTPAKGFKNAAPLTP 120 VL + +D G + V +GLD T RDI L++KGLPW AKGF+++A ++ Sbjct: 71 VLLVGKDSDGTGEGKDILGCVAGYGVGLDLTARDIQCRLKEKGLPWLKAKGFRHSACVSD 130 Query: 121 YIAFPETEELEATDYTVRKNGVEVQRGNVKNMIFSLQKIVDFIAARYGLGKDDLIFTGTP 180 + A E +++++NGV QRG+ MI+ +++I+ +AA YGLGK DL+FTGT Sbjct: 131 FAAAGRIGNPENVLFSLKQNGVLKQRGDTGLMIYPIREILHKLAADYGLGKGDLVFTGTS 190 Query: 181 AGVGPVASGDSFEL 194 +GVG + +GD+ L Sbjct: 191 SGVGAIGAGDNLAL 204 >ref|NP_902458.1| probable isomerase [Chromobacterium violaceum ATCC 12472] gb|AAQ60456.1| probable isomerase [Chromobacterium violaceum ATCC 12472] Length = 216 Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 81/192 (42%), Positives = 118/192 (61%), Gaps = 3/192 (1%) Query: 5 VNNIYCVGRNYRQHAEELGNKVPSEPLVFLKPSHAAVPLDKAIIQLPKDAGLIHYEGEIV 64 V NI+C+GRNY HA ELGNKV EPLVFLKP+ A + + + I+LP+ +G +H+E E+V Sbjct: 13 VGNIFCIGRNYAAHAAELGNKVEDEPLVFLKPTSALLD-ESSPIRLPEYSGDVHHECELV 71 Query: 65 LRIAR--DYVPGMSVQELVDVMALGLDFTLRDIHNDLQKKGLPWTPAKGFKNAAPLTPYI 122 I + D +P + V +GLD T RD + ++KG PWT AKGF+ AA ++ + Sbjct: 72 ALIGKGGDDIPPEKALDHVAGYGIGLDLTARDAQAEAKRKGQPWTKAKGFRGAACVSTLV 131 Query: 123 AFPETEELEATDYTVRKNGVEVQRGNVKNMIFSLQKIVDFIAARYGLGKDDLIFTGTPAG 182 E+ + + +R NG QRG+ M+F+L + + +++ YGL DLIFTGTP G Sbjct: 132 PAARVEDPQRLKFELRVNGQLRQRGDAGLMLFTLAEQISYLSRLYGLSDGDLIFTGTPEG 191 Query: 183 VGPVASGDSFEL 194 V + SGD +L Sbjct: 192 VARIESGDQLDL 203 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 329,268,316 Number of extensions: 14161659 Number of successful extensions: 30422 Number of sequences better than 1.0e-05: 571 Number of HSP's gapped: 29763 Number of HSP's successfully gapped: 571 Length of query: 207 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 87 Effective length of database: 431,425,698 Effective search space: 37534035726 Effective search space used: 37534035726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)