BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0459.0030.p (215 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00063583.1| COG0765: ABC-type amino acid transport system... 205 6e-52 ref|NP_465774.1| similar to amino acid ABC transporter, permease... 175 6e-43 ref|NP_471683.1| similar to amino acid ABC transporter, permease... 175 7e-43 ref|NP_561517.1| probable amino acid ABC transporter [Clostridiu... 169 4e-41 ref|NP_633964.1| Glutamine transporter, permease protein [Methan... 164 2e-39 >ref|ZP_00063583.1| COG0765: ABC-type amino acid transport system, permease component [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 219 Score = 205 bits (521), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 101/215 (46%), Positives = 137/215 (63%) Query: 1 MDIRFDIIAHYLPVLLRGTAFTXXXXXXXXXXXXXXXXXXXFGKMAPKAYFRWPFHCYIN 60 M +++I Y P + G +T G+M+ F YI Sbjct: 1 MSFSYEMILDYAPFFMHGLLYTLLFSLCGVVFGTIFGLIIALGRMSKNPVISGIFKTYIG 60 Query: 61 FFRGTPLYVQILIVHFGVIPAFYGSTNVLMTSFVALSLNSAAYSAEIFRAGIQSIDPGQR 120 FRGTPL+VQILI +FGV+PA +G +N + ++LSLN+AAY AE FR+GIQSI GQR Sbjct: 61 LFRGTPLFVQILITNFGVVPAIFGHSNPYIAGALSLSLNAAAYIAETFRSGIQSISEGQR 120 Query: 121 EAAVSLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSLLALIAAPEIMYWSNTMK 180 EAA +LG+++ MRFII+PQA+K ++PA GNEFI L+KDSSL++ I+APEI YW+ M Sbjct: 121 EAARTLGLSQFDTMRFIIVPQAIKIVIPALGNEFISLIKDSSLVSAISAPEITYWAQAMN 180 Query: 181 GQYLRIWEPYLTAALIYFILTYSLSKLLNYIERKV 215 QY +W PYLT A++Y ILT S S+L+ ERK+ Sbjct: 181 AQYYVVWTPYLTVAVLYLILTLSASRLMKLWERKM 215 >ref|NP_465774.1| similar to amino acid ABC transporter, permease protein [Listeria monocytogenes EGD-e] pir||AB1356 amino acid ABC transporter, permease protein homolog arpJ [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00328.1| arpJ [Listeria monocytogenes] Length = 486 Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 84/173 (48%), Positives = 121/173 (69%), Gaps = 3/173 (1%) Query: 44 KMAPKAYFRWPFHCYINFFRGTPLYVQILIVHFGVIPAFYG-STNVLMTSFVALSLNSAA 102 K+A + RWP CYI F RGTPL +QI IV FG G + ++ +ALSLNSAA Sbjct: 312 KLAKTRWLRWPAACYIEFVRGTPLLIQIFIVFFGT--QIIGMDVSAFVSGCIALSLNSAA 369 Query: 103 YSAEIFRAGIQSIDPGQREAAVSLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSS 162 Y AEI RAGI +++ GQ EAA SLGMT+ +MR+IILPQAVK ++PA GNEF+ ++K+SS Sbjct: 370 YVAEIIRAGISAVNKGQMEAARSLGMTQGASMRYIILPQAVKNILPALGNEFVTVIKESS 429 Query: 163 LLALIAAPEIMYWSNTMKGQYLRIWEPYLTAALIYFILTYSLSKLLNYIERKV 215 ++++I E+M+ + ++G + + P + +LIYF+LT+SLS+LL ER++ Sbjct: 430 IVSVIGVTELMFMTGVVQGASFKPFIPLIITSLIYFVLTFSLSRLLGVAERRM 482 >ref|NP_471683.1| similar to amino acid ABC transporter, permease protein [Listeria innocua] pir||AC1726 amino acid ABC transporter, permease protein homolog lin2352 [imported] - Listeria innocua (strain Clip11262) emb|CAC97579.1| lin2352 [Listeria innocua] Length = 486 Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 84/173 (48%), Positives = 121/173 (69%), Gaps = 3/173 (1%) Query: 44 KMAPKAYFRWPFHCYINFFRGTPLYVQILIVHFGVIPAFYG-STNVLMTSFVALSLNSAA 102 K+A + RWP CYI F RGTPL +QI IV FG G + ++ +ALSLNSAA Sbjct: 312 KLAKTRWLRWPAACYIEFVRGTPLLIQIFIVFFGT--QIIGMDVSAFVSGCIALSLNSAA 369 Query: 103 YSAEIFRAGIQSIDPGQREAAVSLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSS 162 Y AEI RAGI +++ GQ EAA SLGMT+ +MR+IILPQAVK ++PA GNEF+ ++K+SS Sbjct: 370 YVAEIIRAGISAVNKGQMEAARSLGMTQGASMRYIILPQAVKNILPALGNEFVTVIKESS 429 Query: 163 LLALIAAPEIMYWSNTMKGQYLRIWEPYLTAALIYFILTYSLSKLLNYIERKV 215 ++++I E+M+ + ++G + + P + +LIYF+LT+SLS+LL ER++ Sbjct: 430 IVSVIGVTELMFMTGVVQGASFKPFIPLIITSLIYFVLTFSLSRLLGVAERRM 482 >ref|NP_561517.1| probable amino acid ABC transporter [Clostridium perfringens] dbj|BAB80307.1| probable amino acid ABC transporter [Clostridium perfringens str. 13] Length = 223 Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 130/218 (59%), Gaps = 6/218 (2%) Query: 3 IRFDIIAHYLPVLLRGTAFTXXXXXXXXXXXXXXXXXXXFGKMAPKAYFRWPF-----HC 57 + F + Y PV L G +T F K + + F+ Sbjct: 4 LDFSFLKEYFPVFLEGAKWTLIISAITVILGALLGTILCFMKRSKFSIFKVKILRVISTA 63 Query: 58 YINFFRGTPLYVQILIVHFGVIPAFYGSTNVLMTSFVALSLNSAAYSAEIFRAGIQSIDP 117 Y+ RGTPL +QI IV+FG +P+F VL++ +A+SLNSAAY +EI RAGI ++D Sbjct: 64 YVEVIRGTPLLLQIYIVYFG-LPSFGIQLEVLLSCIIAISLNSAAYVSEIIRAGIDAVDK 122 Query: 118 GQREAAVSLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSLLALIAAPEIMYWSN 177 GQ EAA SLGMT AMR IILPQA+K ++PA GNEF+ ++K+SS+ + I E+MY S Sbjct: 123 GQLEAARSLGMTEGMAMRLIILPQAIKNILPAIGNEFVAIIKESSMASTIGVAELMYSSK 182 Query: 178 TMKGQYLRIWEPYLTAALIYFILTYSLSKLLNYIERKV 215 + G + +EP + A+ YF++T+SL ++++Y+E+++ Sbjct: 183 IVTGATYKGFEPLIVIAMFYFVMTFSLGRVMSYVEKRL 220 >ref|NP_633964.1| Glutamine transporter, permease protein [Methanosarcina mazei Goe1] gb|AAM31636.1| Glutamine transporter, permease protein [Methanosarcina mazei Goe1] Length = 231 Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/214 (41%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 13 PVLLRGTAFTXXXXXXXXXXXXXXXXXXXFGKMAPKAYFRWPFHCYINFFRGTPLYVQIL 72 P LLRG T FGK++ +A FR P Y++F RGTPL+VQIL Sbjct: 16 PSLLRGAVITIEVTTFAIFFGLILGTIAAFGKLSKRAIFRIPSSVYVDFIRGTPLFVQIL 75 Query: 73 IVHFGVIPAFYGST------NVLMTSFVALSLNSAAYSAEIFRAGIQSIDPGQREAAVSL 126 + ++G+ G T + ++ S+NS AY+AEI RAGI+S+D GQ EAA SL Sbjct: 76 LFYYGIPGLIIGITGEPFRIDPILAGIAVCSINSGAYNAEIVRAGIKSVDRGQMEAARSL 135 Query: 127 GMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSLLALIAAPEI-----MYWSNTMKG 181 GMT QAM+ +I+PQAV+ ++P GNEFI L+KDSSLLA+I+ E+ +Y S T Sbjct: 136 GMTEGQAMKEVIMPQAVRLIIPPLGNEFIALLKDSSLLAVISVHELSKNGMLYVSKTFAA 195 Query: 182 QYLRIWEPYLTAALIYFILTYSLSKLLNYIERKV 215 + Y++ A +Y LT +S++LN+IER++ Sbjct: 196 -----FPTYISVAFVYLALTMGISRVLNHIERRL 224 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.330 0.142 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 262,935,834 Number of extensions: 9087437 Number of successful extensions: 31306 Number of sequences better than 1.0e-05: 1939 Number of HSP's gapped: 30020 Number of HSP's successfully gapped: 1940 Length of query: 215 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 94 Effective length of database: 428,710,599 Effective search space: 40298796306 Effective search space used: 40298796306 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 123 (52.0 bits)