BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0459.0029.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00180511.1| hypothetical protein Mther151301 [Moorella th... 352 4e-96 ref|NP_465775.1| similar to amino acid ABC transporter (ATP-bind... 340 2e-92 ref|NP_471684.1| similar to amino acid ABC transporter (ATP-bind... 339 3e-92 ref|NP_561518.1| probable amino acid ABC transporter [Clostridiu... 337 2e-91 ref|ZP_00183847.1| hypothetical protein Exigu072601 [Exiguobacte... 335 4e-91 >ref|ZP_00180511.1| hypothetical protein Mther151301 [Moorella thermoacetica ATCC 39073] Length = 242 Score = 352 bits (903), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 171/240 (71%), Positives = 202/240 (84%) Query: 4 MISVRHLHKSFGAHKVLTDINVDIHAREVVVVIGPSGSGKSTFLRCLNLLEQPQEGDIMI 63 +I V+ LHKSFG+ +VL IN +I +EVVVVIGPSGSGKSTFLRCLNLLE P G+++I Sbjct: 3 LIEVKDLHKSFGSLEVLRGINCNIDEKEVVVVIGPSGSGKSTFLRCLNLLEVPTRGEVII 62 Query: 64 EGTSLMAKSTRINDIRTELGMVFQQFNLFPHKKVIENIMLAPVRVRKWPAEQARRKALEL 123 +GTSL T IN +R E+GMVFQ+FNLFPHK V+ENI LAP++VR P +A + A EL Sbjct: 63 DGTSLTDPRTNINAVRQEVGMVFQRFNLFPHKTVLENITLAPIKVRHLPETEAEKLAREL 122 Query: 124 LDKVGLSEKAEAYPASLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLAVMK 183 L +VGLS+KA AYP LSGGQ QRVAIARALAM PKIMLFDEPTSALDPEMVGEVLAVMK Sbjct: 123 LARVGLSDKAGAYPEQLSGGQQQRVAIARALAMRPKIMLFDEPTSALDPEMVGEVLAVMK 182 Query: 184 ELAREGMTMVVVTHEMGFAREVGDRVLFMEQGAVVEEGHPEQLFSHPSHERTRAFLSKVL 243 +LAR+GMTMVVVTHEMGFAREVGDRVLFM++G ++EEG P+QLF++ + RTRAFLSK+L Sbjct: 183 DLARDGMTMVVVTHEMGFAREVGDRVLFMDEGLILEEGTPDQLFNNCQNPRTRAFLSKIL 242 >ref|NP_465775.1| similar to amino acid ABC transporter (ATP-binding protein) [Listeria monocytogenes EGD-e] pir||AC1356 amino acid ABC transporter (ATP-binding protein) homolog lmo2251 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00329.1| lmo2251 [Listeria monocytogenes] Length = 241 Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 158/240 (65%), Positives = 199/240 (82%) Query: 4 MISVRHLHKSFGAHKVLTDINVDIHAREVVVVIGPSGSGKSTFLRCLNLLEQPQEGDIMI 63 MI++++LHK FG +VL I+++I + EVVVVIGPSGSGKSTFLRCLNLLEQP G I+ Sbjct: 1 MINIKNLHKHFGKLEVLKGIDLEIASGEVVVVIGPSGSGKSTFLRCLNLLEQPTTGTILF 60 Query: 64 EGTSLMAKSTRINDIRTELGMVFQQFNLFPHKKVIENIMLAPVRVRKWPAEQARRKALEL 123 E LMAK T +N++R ++GMVFQ FNLFPHK V+EN+MLAP++V+ + A++ AL L Sbjct: 61 ENKDLMAKQTNVNELRQKMGMVFQNFNLFPHKNVLENLMLAPMKVKNEDSAAAKKHALSL 120 Query: 124 LDKVGLSEKAEAYPASLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLAVMK 183 L+KVGL++KA +YP+ LSGGQ QRVAIARALAM P +MLFDEPTSALDPEMVGEVL+VMK Sbjct: 121 LEKVGLADKATSYPSQLSGGQQQRVAIARALAMNPDVMLFDEPTSALDPEMVGEVLSVMK 180 Query: 184 ELAREGMTMVVVTHEMGFAREVGDRVLFMEQGAVVEEGHPEQLFSHPSHERTRAFLSKVL 243 LA+EGMTMVVVTHEMGFAREV DRV+FM+ G + E+G PE++F +P ++RT+ FL KVL Sbjct: 181 SLAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQGTPEEVFGNPQNDRTKDFLGKVL 240 >ref|NP_471684.1| similar to amino acid ABC transporter (ATP-binding protein) [Listeria innocua] pir||AD1726 amino acid ABC transporter (ATP-binding protein) homolog lin2353 [imported] - Listeria innocua (strain Clip11262) emb|CAC97580.1| lin2353 [Listeria innocua] Length = 241 Score = 339 bits (870), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 158/240 (65%), Positives = 198/240 (82%) Query: 4 MISVRHLHKSFGAHKVLTDINVDIHAREVVVVIGPSGSGKSTFLRCLNLLEQPQEGDIMI 63 MI++++LHK FG +VL I+++I + EVVVVIGPSGSGKSTFLRCLNLLEQP G I+ Sbjct: 1 MINIKNLHKHFGKLEVLKGIDLEIASGEVVVVIGPSGSGKSTFLRCLNLLEQPTTGTILF 60 Query: 64 EGTSLMAKSTRINDIRTELGMVFQQFNLFPHKKVIENIMLAPVRVRKWPAEQARRKALEL 123 E LMAK T +N++R ++GMVFQ FNLFPHK V+EN+MLAP++V+ + A+ AL L Sbjct: 61 ENKDLMAKQTNVNELRQKMGMVFQNFNLFPHKNVLENLMLAPMKVKNEDSTAAKEHALSL 120 Query: 124 LDKVGLSEKAEAYPASLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLAVMK 183 L+KVGL++KA +YP+ LSGGQ QRVAIARALAM P +MLFDEPTSALDPEMVGEVL+VMK Sbjct: 121 LEKVGLADKATSYPSQLSGGQQQRVAIARALAMNPDVMLFDEPTSALDPEMVGEVLSVMK 180 Query: 184 ELAREGMTMVVVTHEMGFAREVGDRVLFMEQGAVVEEGHPEQLFSHPSHERTRAFLSKVL 243 LA+EGMTMVVVTHEMGFAREV DRV+FM+ G + E+G PE++F +P ++RT+ FL KVL Sbjct: 181 SLAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQGTPEEVFGNPQNDRTKDFLGKVL 240 >ref|NP_561518.1| probable amino acid ABC transporter [Clostridium perfringens] dbj|BAB80308.1| probable amino acid ABC transporter [Clostridium perfringens str. 13] Length = 240 Score = 337 bits (863), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 157/240 (65%), Positives = 192/240 (80%) Query: 4 MISVRHLHKSFGAHKVLTDINVDIHAREVVVVIGPSGSGKSTFLRCLNLLEQPQEGDIMI 63 MI+VR+L+KSFG ++VL DIN I EVVV+IGPSGSGKSTFLRCLNLLE+P G I Sbjct: 1 MINVRNLYKSFGKNEVLKDINETIKKGEVVVIIGPSGSGKSTFLRCLNLLEEPTSGVINF 60 Query: 64 EGTSLMAKSTRINDIRTELGMVFQQFNLFPHKKVIENIMLAPVRVRKWPAEQARRKALEL 123 EG + K+ IN IR ++GMVFQQFNLFPHK V+EN+ + P +++ A +K EL Sbjct: 61 EGEDITDKNVDINKIREKMGMVFQQFNLFPHKTVMENLTIGPTKIKNISNGDAVKKGSEL 120 Query: 124 LDKVGLSEKAEAYPASLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLAVMK 183 L+KVGL +K YP SLSGGQ QR+AIARALAMEP +MLFDEPTSALDPEMVGEVL VMK Sbjct: 121 LEKVGLLDKKNVYPNSLSGGQKQRIAIARALAMEPDVMLFDEPTSALDPEMVGEVLGVMK 180 Query: 184 ELAREGMTMVVVTHEMGFAREVGDRVLFMEQGAVVEEGHPEQLFSHPSHERTRAFLSKVL 243 LA++GMTMVVVTHEMGFA+EVGDR+LFM++G ++EEG PE++F +P + RT+ FLSKVL Sbjct: 181 SLAKDGMTMVVVTHEMGFAKEVGDRILFMDEGRIIEEGTPEEIFQNPKNSRTKDFLSKVL 240 >ref|ZP_00183847.1| hypothetical protein Exigu072601 [Exiguobacterium sp. 255-15] Length = 242 Score = 335 bits (860), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 163/240 (67%), Positives = 193/240 (80%) Query: 4 MISVRHLHKSFGAHKVLTDINVDIHAREVVVVIGPSGSGKSTFLRCLNLLEQPQEGDIMI 63 +I V+ L KSFG+++VL DI+V+I +EVV VIGPSGSGKSTFLRCLN LE G +++ Sbjct: 3 IIEVKQLKKSFGSNEVLKDISVEIEEKEVVCVIGPSGSGKSTFLRCLNRLEDITGGTVIV 62 Query: 64 EGTSLMAKSTRINDIRTELGMVFQQFNLFPHKKVIENIMLAPVRVRKWPAEQARRKALEL 123 + + IN +R E+GMVFQ FNLFPHK V+EN+ LAP++VRK QA+++ALEL Sbjct: 63 DTHDITDPKVDINKVREEVGMVFQHFNLFPHKTVLENVTLAPMKVRKTDKTQAKQRALEL 122 Query: 124 LDKVGLSEKAEAYPASLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLAVMK 183 LDKVGL EKA+ YP LSGGQ QRVAIARALAM PKIMLFDEPTSALDPEMVG+VLAVMK Sbjct: 123 LDKVGLREKADNYPGELSGGQKQRVAIARALAMNPKIMLFDEPTSALDPEMVGDVLAVMK 182 Query: 184 ELAREGMTMVVVTHEMGFAREVGDRVLFMEQGAVVEEGHPEQLFSHPSHERTRAFLSKVL 243 +LA EGMTM+VVTHEMGFAREVGDRVLFM+ G +VEE P LF P HERT++FLSKVL Sbjct: 183 QLALEGMTMIVVTHEMGFAREVGDRVLFMDGGFIVEENIPSLLFDSPQHERTQSFLSKVL 242 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 319,010,599 Number of extensions: 11629616 Number of successful extensions: 124741 Number of sequences better than 1.0e-05: 22631 Number of HSP's gapped: 91039 Number of HSP's successfully gapped: 24396 Length of query: 243 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 121 Effective length of database: 425,995,500 Effective search space: 51545455500 Effective search space used: 51545455500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)