BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0459.0013.p
         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_781296.1| transposase [Clostridium tetani E88] >gi|282027...   136   1e-31
ref|ZP_00184334.1| hypothetical protein Exigu002501 [Exiguobacte...   130   7e-30
gb|AAM09847.1| transposase-like protein A [Enterococcus faecium]      127   7e-29
ref|ZP_00036234.1| COG1943: Transposase and inactivated derivati...   127   9e-29
ref|NP_957652.1| putative transposase [Bacillus methanolicus] >g...   126   1e-28

>ref|NP_781296.1| transposase [Clostridium tetani E88]
 gb|AAO35233.1| transposase [Clostridium tetani E88]
          Length = 132

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 69/81 (85%)

Query: 2   IFESIQMNYNITLQEWNHDKDHVHILMKAHPNSDISKFLNAYKSASSRLIKKEFPIIRQQ 61
           IFE I   YNI L+EWNHD DHVH+L K  PN+DISKF+NAYKSASSRLIKKEFP I+ Q
Sbjct: 39  IFEYICPKYNIVLEEWNHDLDHVHLLFKGSPNTDISKFINAYKSASSRLIKKEFPKIKNQ 98

Query: 62  LWKEYFWSRSYCLLTTGGGPI 82
           LWKEYFWSRSYCL+TTGG PI
Sbjct: 99  LWKEYFWSRSYCLITTGGVPI 119


>ref|ZP_00184334.1| hypothetical protein Exigu002501 [Exiguobacterium sp. 255-15]
          Length = 106

 Score =  130 bits (328), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 69/78 (88%)

Query: 3  FESIQMNYNITLQEWNHDKDHVHILMKAHPNSDISKFLNAYKSASSRLIKKEFPIIRQQL 62
          FE I  +Y+ITL EWNHD DH+H+L KAHPN+++SKFLNAYKSASSRLIK++FP +++QL
Sbjct: 14 FERIGASYHITLNEWNHDGDHIHVLFKAHPNTEMSKFLNAYKSASSRLIKRDFPHVKKQL 73

Query: 63 WKEYFWSRSYCLLTTGGG 80
          WKE FWSRSYCL+TTGG 
Sbjct: 74 WKEMFWSRSYCLVTTGGA 91


>gb|AAM09847.1| transposase-like protein A [Enterococcus faecium]
          Length = 134

 Score =  127 bits (320), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 69/80 (86%)

Query: 3   FESIQMNYNITLQEWNHDKDHVHILMKAHPNSDISKFLNAYKSASSRLIKKEFPIIRQQL 62
           FE I  +Y+ITL EWNHDKDHVHI+ KA P ++++KF+NAYKSASSRLIK++FP ++Q L
Sbjct: 40  FERISESYHITLVEWNHDKDHVHIMFKAQPKTELTKFINAYKSASSRLIKRDFPRVKQFL 99

Query: 63  WKEYFWSRSYCLLTTGGGPI 82
           WKE FWS+S+CLLTTGG PI
Sbjct: 100 WKEMFWSKSFCLLTTGGAPI 119


>ref|ZP_00036234.1| COG1943: Transposase and inactivated derivatives [Enterococcus
          faecium]
          Length = 108

 Score =  127 bits (318), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 69/80 (86%)

Query: 3  FESIQMNYNITLQEWNHDKDHVHILMKAHPNSDISKFLNAYKSASSRLIKKEFPIIRQQL 62
          FE I  +Y+ITL EWNHDKDHVHI+ KA P ++++KF+NAYKSASSRLIK++FP ++Q L
Sbjct: 14 FERISESYHITLVEWNHDKDHVHIMFKAQPKTELTKFINAYKSASSRLIKRDFPRVKQFL 73

Query: 63 WKEYFWSRSYCLLTTGGGPI 82
          WKE FWS+S+CLLTTGG PI
Sbjct: 74 WKEMFWSKSFCLLTTGGAPI 93


>ref|NP_957652.1| putative transposase [Bacillus methanolicus]
 gb|AAR39398.1| putative transposase [Bacillus methanolicus]
          Length = 105

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 69/79 (87%)

Query: 2  IFESIQMNYNITLQEWNHDKDHVHILMKAHPNSDISKFLNAYKSASSRLIKKEFPIIRQQ 61
          +F  +  NYNI+L EWNHD DHVHIL KA+PNS++SKF+NAYKSASSRLIKK FP ++++
Sbjct: 12 MFVRLGKNYNISLVEWNHDMDHVHILFKAYPNSELSKFINAYKSASSRLIKKHFPQVKRK 71

Query: 62 LWKEYFWSRSYCLLTTGGG 80
          LWKE+FWSRS+CLLTTGG 
Sbjct: 72 LWKEHFWSRSFCLLTTGGS 90


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 130,341,967
Number of extensions: 4090437
Number of successful extensions: 11893
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 11903
Number of HSP's successfully gapped: 38
Length of query: 82
Length of database: 757,237,578
Length adjustment: 52
Effective length of query: 30
Effective length of database: 616,052,430
Effective search space: 18481572900
Effective search space used: 18481572900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)