BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0459.0011.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_622379.1| Acyl-CoA:acetate CoA transferase beta subunit [... 255 4e-67 ref|NP_602656.1| Butyrate-acetoacetate CoA-transferase subunit B... 247 2e-64 ref|ZP_00144734.1| Butyrate-acetoacetate CoA-transferase subunit... 243 2e-63 ref|NP_905290.1| coenzyme A transferase, beta subunit [Porphyrom... 240 2e-62 gb|EAK67783.1| unknown [environmental sequence] 239 4e-62 >ref|NP_622379.1| Acyl-CoA:acetate CoA transferase beta subunit [Thermoanaerobacter tengcongensis] gb|AAM23983.1| Acyl-CoA:acetate CoA transferase beta subunit [Thermoanaerobacter tengcongensis] Length = 221 Score = 255 bits (652), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 126/215 (58%), Positives = 166/215 (77%), Gaps = 2/215 (0%) Query: 4 REFIVRRIAQEFKDGDVVNLGIGLPTMAVDYIPDNVHIMLQAENGILGVGPKAAKEQENI 63 ++ I +RIA+E K G++VNLGIGLPT+ +YIP+ VH++ Q+ENGI G+GP +E++ Sbjct: 9 KQIIAKRIAKELKHGELVNLGIGLPTLVANYIPEGVHVIFQSENGITGMGPMPEPGKEDV 68 Query: 64 DCIDSGGSYVTTMSGACYFDSALSFSIIRGGHVDITVLGALEVDKNGNLASWMIPGKKVP 123 + I++GG YVT M GA +FDSA SF++IRGGHVD+TVLGALEVD+ GNLA+W+IPGK VP Sbjct: 69 NIINAGGQYVTVMPGAAFFDSAFSFALIRGGHVDVTVLGALEVDEEGNLANWIIPGKLVP 128 Query: 124 GMGGAMDLVVGAKRVIVAMDHVNKNGEPKILEKCKLPLTAVNVVKTIVTEMAVIDVIPGT 183 GMGGAMDL GAKRVIVAM H K G+PKIL+KC+LPLTA V IVTE+AVI+V Sbjct: 129 GMGGAMDLATGAKRVIVAMQHTAK-GQPKILKKCRLPLTAKGKVSLIVTELAVIEVTK-E 186 Query: 184 GLMLKEIAPGLSVEDVQKATGAKLLVSPNLKAIAV 218 GL+LKEI S+E+V+ T A L++ ++K + V Sbjct: 187 GLLLKEIHRDTSIEEVKSLTEANLIIPDDVKYMDV 221 >ref|NP_602656.1| Butyrate-acetoacetate CoA-transferase subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gb|AAL93955.1| Butyrate-acetoacetate CoA-transferase subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 217 Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 126/211 (59%), Positives = 161/211 (76%), Gaps = 3/211 (1%) Query: 4 REFIVRRIAQEFKDGDVVNLGIGLPTMAVDYIPDNVHIMLQAENGILGVGPKAAKEQENI 63 RE I +R+AQEF DG VVNLGIGLPT+ +Y+ D + ++ Q+ENG +GVGP K +E+ Sbjct: 9 REVIAKRVAQEFHDGYVVNLGIGLPTLVANYVGD-MDVIFQSENGCIGVGPAPEKGKEDP 67 Query: 64 DCIDSGGSYVTTMSGACYFDSALSFSIIRGGHVDITVLGALEVDKNGNLASWMIPGKKVP 123 +++G ++T GA +FDSA SF IIRGGHVD TVLGALEVD+ GNLA+WMIPGKKVP Sbjct: 68 YLVNAGAGFITAAKGAMFFDSAYSFGIIRGGHVDATVLGALEVDEKGNLANWMIPGKKVP 127 Query: 124 GMGGAMDLVVGAKRVIVAMDHVNKNGEPKILEKCKLPLTAVNVVKTIVTEMAVIDVIPGT 183 GMGGAMDLVVGAK+VIVAM+H + NG KIL++CKLPLTAV VV I+TE AV +V Sbjct: 128 GMGGAMDLVVGAKKVIVAMEHTS-NGAIKILKECKLPLTAVGVVDLIITEKAVFEVTD-K 185 Query: 184 GLMLKEIAPGLSVEDVQKATGAKLLVSPNLK 214 GL+LKEI P S+ED++ T A +++ +LK Sbjct: 186 GLVLKEITPYSSLEDIKATTAADFIIADDLK 216 >ref|ZP_00144734.1| Butyrate-acetoacetate CoA-transferase subunit B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA23665.1| Butyrate-acetoacetate CoA-transferase subunit B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 221 Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 125/211 (59%), Positives = 158/211 (74%), Gaps = 3/211 (1%) Query: 4 REFIVRRIAQEFKDGDVVNLGIGLPTMAVDYIPDNVHIMLQAENGILGVGPKAAKEQENI 63 RE I +R+AQEF DG VVNLGIGLPT+ +Y+ D + ++ Q+ENG +GVGP K +E+ Sbjct: 9 REVIAKRVAQEFHDGYVVNLGIGLPTLVANYVGD-MDVIFQSENGCIGVGPAPEKGKEDP 67 Query: 64 DCIDSGGSYVTTMSGACYFDSALSFSIIRGGHVDITVLGALEVDKNGNLASWMIPGKKVP 123 +++G ++T GA +FDSA SF IIRGGHVD TVLGALEVD+ GNLA+WMIPGKKVP Sbjct: 68 YLVNAGAGFITAAKGAMFFDSAYSFGIIRGGHVDATVLGALEVDEKGNLANWMIPGKKVP 127 Query: 124 GMGGAMDLVVGAKRVIVAMDHVNKNGEPKILEKCKLPLTAVNVVKTIVTEMAVIDVIPGT 183 GMGGAMDLVVGAK+VIVAM+H + NG KIL++CKLPLTAV VV I+TE AV +V Sbjct: 128 GMGGAMDLVVGAKKVIVAMEHTS-NGAIKILKECKLPLTAVGVVDLIITEKAVFEVTD-K 185 Query: 184 GLMLKEIAPGLSVEDVQKATGAKLLVSPNLK 214 GL+LKEI P S+ED++ T ++ LK Sbjct: 186 GLVLKEITPYSSLEDIKATTATDFALTDELK 216 >ref|NP_905290.1| coenzyme A transferase, beta subunit [Porphyromonas gingivalis W83] gb|AAQ66189.1| coenzyme A transferase, beta subunit [Porphyromonas gingivalis W83] Length = 220 Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 117/204 (57%), Positives = 153/204 (75%), Gaps = 1/204 (0%) Query: 4 REFIVRRIAQEFKDGDVVNLGIGLPTMAVDYIPDNVHIMLQAENGILGVGPKAAKEQENI 63 RE I +R+A E KDGDVVNLGIGLPTM +Y+ V + LQ+ENG++G+GP +E+ Sbjct: 7 REVIAKRVALELKDGDVVNLGIGLPTMVPNYLKPGVQVYLQSENGMIGMGPAPETGKEDP 66 Query: 64 DCIDSGGSYVTTMSGACYFDSALSFSIIRGGHVDITVLGALEVDKNGNLASWMIPGKKVP 123 I++GG +T + GA FDSA SF+IIRGGHVD++VLGAL+VD+NG+LA+W+IPGKK P Sbjct: 67 YLINAGGGSITAIPGAASFDSATSFAIIRGGHVDVSVLGALQVDENGDLANWLIPGKKAP 126 Query: 124 GMGGAMDLVVGAKRVIVAMDHVNKNGEPKILEKCKLPLTAVNVVKTIVTEMAVIDVIPGT 183 GMGGAMDL++G ++VI+AM+H K G PKI++KC LPLTA V I+TEM VI+V P Sbjct: 127 GMGGAMDLLIGTRKVILAMEHTAK-GNPKIMKKCSLPLTAKGQVNLIITEMCVIEVCPEK 185 Query: 184 GLMLKEIAPGLSVEDVQKATGAKL 207 GL++ EI P + E VQ AT A L Sbjct: 186 GLVVTEIHPDFTAEQVQAATEASL 209 >gb|EAK67783.1| unknown [environmental sequence] Length = 218 Score = 239 bits (609), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 115/211 (54%), Positives = 156/211 (73%), Gaps = 1/211 (0%) Query: 3 NREFIVRRIAQEFKDGDVVNLGIGLPTMAVDYIPDNVHIMLQAENGILGVGPKAAKEQEN 62 +RE + R+AQE +DG VNLGIG+PT+ +Y+P + +MLQ+ENG+LG+GP + + + Sbjct: 4 SREQVAMRVAQELQDGYYVNLGIGIPTLVANYVPAGIEVMLQSENGLLGMGPYPTEAEID 63 Query: 63 IDCIDSGGSYVTTMSGACYFDSALSFSIIRGGHVDITVLGALEVDKNGNLASWMIPGKKV 122 D I++G VT + GA F SA SF++IRGGHVD+TVLGA EVD+NGN+ASWMIPGK V Sbjct: 64 ADMINAGKETVTAIKGAAIFSSAESFAMIRGGHVDLTVLGAFEVDQNGNIASWMIPGKLV 123 Query: 123 PGMGGAMDLVVGAKRVIVAMDHVNKNGEPKILEKCKLPLTAVNVVKTIVTEMAVIDVIPG 182 GMGGAMDLV GA+ +IV M H +K G K+L+ C LPLT VN VK IVT++AV++V G Sbjct: 124 KGMGGAMDLVAGAQNIIVTMTHADKYGSSKLLDSCTLPLTGVNCVKKIVTDLAVLEVRDG 183 Query: 183 TGLMLKEIAPGLSVEDVQKATGAKLLVSPNL 213 L E APG+SVE++Q+ T KL++S ++ Sbjct: 184 A-FHLLERAPGISVEEIQQKTAGKLVISGDI 213 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 336,175,477 Number of extensions: 14274719 Number of successful extensions: 30725 Number of sequences better than 1.0e-05: 246 Number of HSP's gapped: 30497 Number of HSP's successfully gapped: 247 Length of query: 218 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 97 Effective length of database: 428,710,599 Effective search space: 41584928103 Effective search space used: 41584928103 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)