BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0454.0012.p (757 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAA95685.1| beta-1,4-xylosidase with transcriptional regulat... 333 9e-90 sp|P23552|XYNB_CALSA Beta-xylosidase (1,4-beta-D-xylan xylohydro... 205 3e-51 ref|NP_241934.1| beta-xylosidase [Bacillus halodurans] >gi|25486... 183 1e-44 sp|O30360|XYNB_THESJ Beta-xylosidase (1,4-beta-D-xylan xylohydro... 172 2e-41 pdb|1PX8|A Chain A, Crystal Structure Of Beta-D-Xylosidase From ... 169 2e-40 >dbj|BAA95685.1| beta-1,4-xylosidase with transcriptional regulator of AraC/XylS family [Aeromonas punctata] Length = 745 Score = 333 bits (854), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 202/641 (31%), Positives = 337/641 (52%), Gaps = 44/641 (6%) Query: 140 LLGYITSRFSKKLSSPEPDNRASNKEFNIVQQILNRVELDFKGKVTLNQIAQEQHYNSSY 199 L G + FS +S D + + ++ + ++L ++L + K+TL +A +H + Y Sbjct: 54 LCGCLQRYFSSGTNSALEDG-SRDYDYKRLNRVLTYIDLHYNEKITLQDMAHSEHLSLHY 112 Query: 200 LSDIFRKNVGVTFKAYLEEVRIRYSLFLLQNQETSITNIALSSGFSDEKSYYKAIKDKFS 259 S F +G+ F+ YL +R+ + L + +I+ IAL GF++ K + K K+K+ Sbjct: 113 FSHFFTDKIGIPFQKYLTLIRLEKAQAQLAANDKNISEIALDCGFANVKLFNKYFKEKYG 172 Query: 260 LTPLQLRK----------------KHLEENHDGLALTGSSKEQLIHHYASLPLELKAIEE 303 TP R+ K EE+ G + + Y L +++ A+++ Sbjct: 173 CTPGSYREASRTPELHQLNVNRKPKTYEESSSGDYYEMETLNAIGSLYRYLDVKVDAVQD 232 Query: 304 N-TIQSTIVKD-----IQADGYE--LKQVWNKIMNIGSANTLLNQNIRDQIKEMREEIPI 355 ++ S + D I+AD ++ WN M G A L ++ R Q+ ++ ++P Sbjct: 233 TLSVPSAHLSDQTCIEIRADQTSSVYEKHWNMTMTAGRAIEGLREDWRKQLSALKGKVPF 292 Query: 356 EYLRFEGVFNQELDVI-QKDRDGLKFNWKFINNILDYTRELELKPFICLSYMPLLFASKS 414 + +RF G+FN E+ V + ++D +NW +++ + D+ + ++PF+ LS+MP A Sbjct: 293 QNIRFHGIFNDEMMVYSENEQDIPLYNWSYVDKLYDFLLDQGVRPFVELSFMPSQLARSK 352 Query: 415 TSFFNYQGNTSPPKEMSQWLSLVQSFMMNCINRYGLDTVSEWYFQIWTELPAYGIHWSGT 474 + F ++GN SPP + ++W +LV F+ +C+NRYG + V +WYF++W E G+ W+G+ Sbjct: 353 ETLFWWRGNISPPSDPAKWQALVGEFVRHCLNRYGAEEVRQWYFEVWNEPDLAGVCWAGS 412 Query: 475 LEQYFELYKQTALLIKGISPSLKVGPAAENFHT--DEQLSERLLGFCRENAVPLDFYSCN 532 E+YF Y+ T IK I P LKVG A + + ++ +E L +CR+ V LDFYS + Sbjct: 413 KEEYFTFYESTVHAIKSILPELKVGGPAMGYGSLWNDTWAEEFLSYCRKREVALDFYSFH 472 Query: 533 IYHNRVKFKDWLERSQTSPVDIKLIPFQYEAKNHTRHLLEKMHRLLETHYKEDIEFIVTR 592 IY K K +E + + + + P Y K + +KM+ H +E VT Sbjct: 473 IYSEYPKLK--VEDDRLTQI---MPPAFY--KESIALMRQKMNASSYGH----VELHVTE 521 Query: 593 WNFSWDVTNFLHDTAFMATFIIDHMLDHSAAHAKAIGFLSASDILYEWDIKSNPFFGGTG 652 WNFS N LHDT FMA F+I H ++ + KA+ F S +D+ E + ++PF+GG G Sbjct: 522 WNFSLYDRNLLHDTMFMAPFVIYHTMN-TLGDVKAMAFWSFTDVFEESIVPASPFYGGFG 580 Query: 653 LVNTEGIKKSAYYAFVFLSKLGSTVFAKGKNYIMT-KRGENIQILAYNHTYPDQLFMKGG 711 L+N +G+ K +YYAF + KLG + KG Y+ T KR ++Q L Y++ + DQLF G Sbjct: 581 LINRDGLNKPSYYAFELMQKLGDELMVKGDGYVGTRKRDGSMQFLFYHYVHVDQLFASGD 640 Query: 712 QPDQHS---YDIFEESNDLLLNIHLQNIYGTYKCKQYSLNR 749 + S YD+FEE + L N+ G YKC Y L+R Sbjct: 641 WSELSSSTRYDVFEEKGSKAYELTLSNLEGPYKCTSYQLDR 681 >sp|P23552|XYNB_CALSA Beta-xylosidase (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase) pir||T30914 xylan 1,4-beta-xylosidase (EC 3.2.1.37) (XynB) - Caldocellum saccharolyticum gb|AAA23063.1| beta-xylosidase (XynB) (3445 could be 3463) gb|AAB87376.1| xylanase [Caldicellulosiruptor saccharolyticus] Length = 488 Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 190/355 (53%), Gaps = 18/355 (5%) Query: 320 ELKQVWNKIMNIGSANTLLNQNIRDQIKEMREEIPIEYLRFEGVFNQELDVIQKDRDGL- 378 ++ + W K + A T L ++ R Q+K+ R+E+ EY+RF G N ++ V ++ DGL Sbjct: 19 KINKFWAKCVGSCHATTALREDWRKQLKKCRDELGFEYIRFHGWLNDDMSVCFRNDDGLL 78 Query: 379 KFNWKFINNILDYTRELELKPFICLSYMPLLFASKSTSFFNYQGNTSPPKEMSQWLSLVQ 438 F++ I++I+D+ E+ +KPFI LS+MP AS + + F+Y+GN +PPK +W L++ Sbjct: 79 SFSFFNIDSIIDFLLEIGMKPFIELSFMPEALASGTKTVFHYKGNITPPKSYEEWGQLIE 138 Query: 439 SFMMNCINRYGLDTVSEWYFQIWTELPAYGIHWSGTLEQYFELYKQTALLIKGISPSLKV 498 + I+RYG + V EW+F++W E W+GT+E+YF+LYK A IK + L+V Sbjct: 139 ELARHLISRYGKNEVREWFFEVWNEPNLKDFFWAGTMEEYFKLYKYAAFAIKKVDSELRV 198 Query: 499 GPAAENFHTDEQLSERLLGFCRENAVPLDFYSCNIYHNRVKFKDWLERSQTSPVDIKLIP 558 G A D + E L FC +N VP+DF S + Y + F S +S ++ + Sbjct: 199 GGPATAI--DAWIPE-LKDFCTKNGVPIDFISTHQYPTDLAF------STSSNMEEAM-- 247 Query: 559 FQYEAKNHTRHLLEKMHRLLETHYKEDIEFIVTRWNFSWDVTNFLHDTAFMATFIIDHML 618 AK L E++ + LE Y + + T WN S + HD + A FI+ ++ Sbjct: 248 ----AKAKRGELAERVKKALEEAYPLPVYY--TEWNNSPSPRDPYHDIPYDAAFIVKTII 301 Query: 619 DHSAAHAKAIGFLSASDILYEWDIKSNPFFGGTGLVNTEGIKKSAYYAFVFLSKL 673 D + + +DI E S PF GG GL+N GI K +Y AF L KL Sbjct: 302 DIIDLPLGCYSYWTFTDIFEECGQSSLPFHGGFGLLNIHGIPKPSYRAFQILDKL 356 >ref|NP_241934.1| beta-xylosidase [Bacillus halodurans] pir||D83783 beta-xylosidase BH1068 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04787.1| beta-xylosidase [Bacillus halodurans] Length = 502 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 116/414 (28%), Positives = 214/414 (51%), Gaps = 33/414 (7%) Query: 309 TIVKDIQADGYELKQVWNKIMNIGSANTLLNQNIRDQIKEMREEIPIEYLRFEGVFNQEL 368 T+V + ++ Y K+ W + G L + D + +++E+ +Y+R G+ + ++ Sbjct: 3 TVVVNDRSFAYFPKK-WKYCIGTGRLGLALQKEYVDHLARLQKELNFQYIRGHGLLHDDI 61 Query: 369 DVIQ--KDRDGLK---FNWKFINNILDYTRELELKPFICLSYMPLLFASKSTSFFNYQGN 423 + + K DG +N+ +I+ I D EL ++PF+ + +MP L AS + F++QGN Sbjct: 62 GIYRERKRADGTVEPFYNFTYIDRIFDTFLELNIRPFVEIGFMPKLLASGEQTIFDWQGN 121 Query: 424 TSPPKEMSQWLSLVQSFMMNCINRYGLDTVSEWYFQIWTELPAYGIHWSGTLEQYFELYK 483 +PPK+ QW L+Q+ + + I+RYG++ V++W F+IW E ++YF+LYK Sbjct: 122 VTPPKDYDQWKQLIQAVISHFIDRYGVEEVTKWPFEIWNEPNLINFWQHADKKEYFKLYK 181 Query: 484 QTALLIKGISPSLKVGPAAENFHTDEQLSERLLGFCRENAVPLDFYSCNIYHNRVKFKDW 543 TA IK + P ++VG A +DE +++ L FC + VP+DF S + Y Sbjct: 182 ITARAIKEVHPYIQVGGPAICGGSDEWITD-FLQFCHKEEVPVDFVSRHAY--------- 231 Query: 544 LERSQTSPVDIKLIP-FQYEAKNHTRHLLEKM---HRLLETHYKEDIEFIVTRWNFSWDV 599 TS K+ P + Y+ H+L+++ L++ ++ F +T +N S+ Sbjct: 232 -----TSAKPHKVTPDYYYQELYENTHMLDELKSVKELIQQSPFPNLPFHITEYNTSYSP 286 Query: 600 TNFLHDTAFMATFIIDHMLDHSAAHAKAIGFLSASDILYEWDIKSNPFFGGTGLVNTEGI 659 N +HDT A ++ +L + + + + SD+ E + + PF GG GL+ GI Sbjct: 287 INPVHDTVLNAAYLA-RILSEAGDIVDSFSYWTFSDVFEEAGVPTAPFHGGFGLIALHGI 345 Query: 660 KKSAYYAFVFLSKLGSTVFAKGKNYIMTKRGE-NIQILAYNHTYPDQLFMKGGQ 712 K Y+ F F ++LG + + ++TK+ + +IQ++ +N L M+ G+ Sbjct: 346 AKPTYHLFSFFNQLGEQLLYRDSQMVVTKKQDGSIQLVVWN------LIMEKGE 393 >sp|O30360|XYNB_THESJ Beta-xylosidase (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase) gb|AAB68820.1| beta-xylosidase [Thermoanaerobacterium sp. 'JW/SL YS485'] Length = 500 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 106/385 (27%), Positives = 203/385 (52%), Gaps = 24/385 (6%) Query: 325 WNKIMNIGSANTLLNQNIRDQIKEMREEIPIEYLRFEGVFNQELDVIQKDRDGLK----F 380 W + G L + D +K ++E I +Y+R G+ ++ + ++D G + + Sbjct: 18 WRYCVGTGRLGLALQKEYIDTLKYVKENIDFKYIRGHGLLCDDVGIYREDVVGDEIKPFY 77 Query: 381 NWKFINNILDYTRELELKPFICLSYMPLLFASKSTSFFNYQGNTSPPKEMSQWLSLVQSF 440 N+ +I+ I D E+ ++PF+ + +MP AS + + F ++GN +PPK+ +W +L+++ Sbjct: 78 NFTYIDRIFDSFLEIGIRPFVEIGFMPKRLASGTQAVFYWEGNVTPPKDYKKWENLIKAV 137 Query: 441 MMNCINRYGLDTVSEWYFQIWTELPAYGIHWSGTLE-QYFELYKQTALLIKGISPSLKVG 499 + + I+RYG+D V++W F+IW E P W E +YF+LYK TA IK ++ ++KVG Sbjct: 138 VSHFISRYGIDEVAKWPFEIWNE-PNLKEFWKDADEKEYFKLYKITAKAIKEVNENIKVG 196 Query: 500 PAAENFHTDEQLSERLLGFCRENAVPLDFYSCNIYHNRVKFKDWLERSQTSPVDI--KLI 557 A D + E L FC E VP+DF S + Y ++ + + +P I +++ Sbjct: 197 GPAICGGADYWI-EDFLNFCYEENVPVDFVSRHAYTSK--------QGEYTPHLIYQEIM 247 Query: 558 PFQYEAKNHTRHLLEKMHRLLETHYKEDIEFIVTRWNFSWDVTNFLHDTAFMATFIIDHM 617 P +Y + + +++ + ++ F +T +N S+ N +HDT F A +I + Sbjct: 248 PSEYMLNE-----FKTVRDIIKNSHFPNLPFHITEYNTSYSPQNPVHDTPFNAAYIA-RI 301 Query: 618 LDHSAAHAKAIGFLSASDILYEWDIKSNPFFGGTGLVNTEGIKKSAYYAFVFLSKLGSTV 677 L + + + + SD+ E D+ + F GG GLV + K +Y F F + +G + Sbjct: 302 LSEGGDYVDSFSYWTFSDVFEERDVPRSQFHGGFGLVALNMVPKPTFYTFKFFNAMGEEM 361 Query: 678 FAKGKNYIMTKRGE-NIQILAYNHT 701 + ++ I+T+R + ++ ++A+N Sbjct: 362 LYRDEHMIVTRRDDGSVALIAWNEV 386 >pdb|1PX8|A Chain A, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1PX8|B Chain B, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1UHV|A Chain A, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1UHV|B Chain B, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1UHV|C Chain C, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase pdb|1UHV|D Chain D, Crystal Structure Of Beta-D-Xylosidase From Thermoanaerobacterium Saccharolyticum, A Family 39 Glycoside Hydrolase Length = 500 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 109/399 (27%), Positives = 207/399 (51%), Gaps = 29/399 (7%) Query: 325 WNKIMNIGSANTLLNQNIRDQIKEMREEIPIEYLRFEGVFNQELDVIQKDRDGLK----F 380 W + G L + + +K ++E I +Y+R G+ ++ + ++D G + + Sbjct: 18 WRYCVGTGRLGLALQKEYIETLKYVKENIDFKYIRGHGLLCDDVGIYREDVVGDEVKPFY 77 Query: 381 NWKFINNILDYTRELELKPFICLSYMPLLFASKSTSFFNYQGNTSPPKEMSQWLSLVQSF 440 N+ +I+ I D E+ ++PF+ + +MP AS + + F ++GN +PPK+ +W LV++ Sbjct: 78 NFTYIDRIFDSFLEIGIRPFVEIGFMPKKLASGTQTVFYWEGNVTPPKDYEKWSDLVKAV 137 Query: 441 MMNCINRYGLDTVSEWYFQIWTELPAYGIHWSGTLE-QYFELYKQTALLIKGISPSLKVG 499 + + I+RYG++ V +W F+IW E P W E +YF+LYK TA IK ++ +LKVG Sbjct: 138 LHHFISRYGIEEVLKWPFEIWNE-PNLKEFWKDADEKEYFKLYKVTAKAIKEVNENLKVG 196 Query: 500 PAAENFHTDEQLSERLLGFCRENAVPLDFYSCNIYHNRVKFKDWLERSQTSPVDI--KLI 557 A D + E L FC E VP+DF S + Y ++ + + +P I +++ Sbjct: 197 GPAICGGADYWI-EDFLNFCYEENVPVDFVSRHAYTSK--------QGEYTPHLIYQEIM 247 Query: 558 PFQYEAKNHTRHLLEKMHRLLETHYKEDIEFIVTRWNFSWDVTNFLHDTAFMATFIIDHM 617 P +Y + + +++ + ++ F +T +N S+ N +HDT F A +I + Sbjct: 248 PSEYMLNE-----FKTVREIIKNSHFPNLPFHITEYNTSYSPQNPVHDTPFNAAYIA-RI 301 Query: 618 LDHSAAHAKAIGFLSASDILYEWDIKSNPFFGGTGLVNTEGIKKSAYYAFVFLSKLGSTV 677 L + + + + SD+ E D+ + F GG GLV I K +Y F F + +G + Sbjct: 302 LSEGGDYVDSFSYWTFSDVFEERDVPRSQFHGGFGLVALNMIPKPTFYTFKFFNAMGEEM 361 Query: 678 FAKGKNYIMTKRGE-NIQILAYNHTYPDQLFMKGGQPDQ 715 + ++ ++T+R + ++ ++A+N ++ K PD+ Sbjct: 362 LYRDEHMLVTRRDDGSVALIAWN-----EVMDKTENPDE 395 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,140,153,155 Number of extensions: 49136001 Number of successful extensions: 123533 Number of sequences better than 1.0e-05: 115 Number of HSP's gapped: 123570 Number of HSP's successfully gapped: 117 Length of query: 757 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 624 Effective length of database: 396,129,411 Effective search space: 247184752464 Effective search space used: 247184752464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)